mRNA_M-pyrifera_M_contig124701.5029.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124701.5029.1
Unique NamemRNA_M-pyrifera_M_contig124701.5029.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: A0A2E7K9G4_9PLAN (Chromosome partitioning protein ParB n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K9G4_9PLAN)

HSP 1 Score: 214 bits (544), Expect = 3.660e-70
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1
Query:    1 YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVDSIY 309
            YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDS YPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVDSIY
Sbjct:   20 YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSEYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVDSIY 122          
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: A0A518FX51_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518FX51_9PLAN)

HSP 1 Score: 186 bits (473), Expect = 2.460e-59
Identity = 87/103 (84.47%), Postives = 94/103 (91.26%), Query Frame = 1
Query:    1 YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVDSIY 309
            YTERLW+LA  LPVITIE+ESLKHLDGVCWFDDDFPPTLRNVVEHF+RME VD  +PIIL PDGQLFDGAHRVAK L+ G++TIQAVKL ELPPPDEIVDSIY
Sbjct:   20 YTERLWELARNLPVITIELESLKHLDGVCWFDDDFPPTLRNVVEHFVRMEQVDLDFPIILAPDGQLFDGAHRVAKRLASGQSTIQAVKLHELPPPDEIVDSIY 122          
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: UPI00118D02FA (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI00118D02FA)

HSP 1 Score: 144 bits (364), Expect = 1.130e-42
Identity = 66/101 (65.35%), Postives = 82/101 (81.19%), Query Frame = 1
Query:    1 YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVDS 303
            + E LW+     PVI +EI+SLKH+D VCWFDD  P TLRNVV HF RME  D+ YPI+LDPDGQLFDGAHRVAKAL++G++TI+AV+L ++PPPDEIV +
Sbjct:   21 HLEPLWEATRDAPVIDVEIKSLKHVDAVCWFDDRNPATLRNVVAHFQRMERTDTAYPILLDPDGQLFDGAHRVAKALARGQSTIKAVQLKKVPPPDEIVTA 121          
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: A0A5C5V748_9BACT (Uncharacterized protein n=1 Tax=Posidoniimonas corsicana TaxID=1938618 RepID=A0A5C5V748_9BACT)

HSP 1 Score: 141 bits (355), Expect = 2.350e-41
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVDSI 306
            +T RLW+     PV+ +EI SLKHLD VCWF D  P TLRNV  HF+RM+  D   PI+LDP+GQ+FDGAHRVA+A++ G+TTI+AV+L  +PPPDE+VDSI
Sbjct:   20 HTPRLWEQTKDYPVVEVEIASLKHLDVVCWFRDSHPATLRNVAAHFVRMQEADERIPILLDPNGQIFDGAHRVAEAMAAGKTTIRAVQLRRVPPPDEVVDSI 121          
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: A0A6B0XBQ7_9BACT (Chromosome partitioning protein ParB n=3 Tax=FCB group TaxID=1783270 RepID=A0A6B0XBQ7_9BACT)

HSP 1 Score: 102 bits (253), Expect = 7.580e-26
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVD 300
            YT+RLWKLA  LP   IE+ES + LD  CWF     PT+R V  H  R+   ++  P+I++ +G+L DG HR+A+AL +G  TI+AV+  ++P PD I D
Sbjct:   21 YTDRLWKLAQDLPEFEIEVESFQELDQDCWFGTGRTPTIREVAAHCKRINETNTECPVIINENGRLMDGGHRLARALLEGTATIKAVQFAQMPEPDVIED 120          
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: A0A6G2JLP4_9BACT (Chromosome partitioning protein ParB n=5 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6G2JLP4_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 5.830e-25
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEI 294
            YTERLW+LA  LP    ++E  + LD  CWF +   P +R V +H  R+   D   P+I++ +G+L DG HR+A+AL +G  T++AV+  E+P PDEI
Sbjct:   20 YTERLWELAKDLPEYDADVERFEELDRDCWFGEGRTPNIREVADHCRRINEADPRIPVIINDNGRLMDGGHRLARALLEGRKTVKAVRFEEMPEPDEI 117          
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: A0A7X3RQ37_9BACT (Chromosome partitioning protein ParB n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3RQ37_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 3.160e-24
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    1 YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVDSI 306
            YTE+LW  +  LP   I++ ++K LD  CWF +   PTLR +  H  ++ H    YPIIL+ DG L DG HR+ KA+ +G  TI+AV+   +P PDEI + +
Sbjct:   17 YTEKLWMQSRDLPPFEIDVSAIKELDEDCWFGEK-KPTLREIARHCKKINHASLKYPIILNVDGSLMDGGHRLCKAILEGHKTIKAVQFSSMPEPDEIHELV 117          
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: A0A7Y9I4Q1_9ACTN (Uncharacterized protein n=1 Tax=Microlunatus parietis TaxID=682979 RepID=A0A7Y9I4Q1_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 1.030e-23
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    4 TERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVDS 303
            TERLW LAA LPV+ + I+++   D  CWFD   P T R V  H  R++  D  YP+IL  DG+L DG HR+AKA   G T I AV+    P PD IV +
Sbjct:   18 TERLWALAAGLPVVAVPIDAIAEFDQDCWFDGG-PATCREVARHADRIQRADLDYPVILSADGRLMDGGHRIAKAWLAGRTMINAVRFPVDPEPDYIVGT 116          
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: A0A7Y2D1Q8_9BACT (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7Y2D1Q8_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 2.140e-23
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    4 TERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEI 294
            TERLW LA  L    +E+ES + LD  CWF     P+LRNV EH  R+   D   PIIL+ DG L DG HR+ +AL +G+  + AV+  ++P PD+I
Sbjct:   16 TERLWDLARDLEPFEVEVESFRELDQDCWFGSHKVPSLRNVAEHCRRINTADFSKPIILNEDGSLMDGGHRLCRALLEGQKHVMAVRFEKMPAPDKI 112          
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Match: A0A4R0JTP3_9ACTN (Uncharacterized protein n=3 Tax=Kribbella TaxID=182639 RepID=A0A4R0JTP3_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 3.740e-23
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    4 TERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRMEHVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEI 294
            TERLWKLA  LPV  + I+S++  D  CWF +  P T R V +H  R++  D  YP+IL  DG+L DG HR+AKA   G TTI A +    P PD I
Sbjct:   18 TERLWKLAEDLPVEPVPIDSIREFDEDCWFGEG-PVTCRMVAQHADRIQKADLRYPVILSADGRLMDGGHRIAKAWLAGATTIDATRFTTDPTPDYI 113          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124701.5029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7K9G4_9PLAN3.660e-7099.03Chromosome partitioning protein ParB n=4 Tax=Gimes... [more]
A0A518FX51_9PLAN2.460e-5984.47Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
UPI00118D02FA1.130e-4265.35hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
A0A5C5V748_9BACT2.350e-4160.78Uncharacterized protein n=1 Tax=Posidoniimonas cor... [more]
A0A6B0XBQ7_9BACT7.580e-2646.00Chromosome partitioning protein ParB n=3 Tax=FCB g... [more]
A0A6G2JLP4_9BACT5.830e-2543.88Chromosome partitioning protein ParB n=5 Tax=Gemma... [more]
A0A7X3RQ37_9BACT3.160e-2443.14Chromosome partitioning protein ParB n=1 Tax=Gemma... [more]
A0A7Y9I4Q1_9ACTN1.030e-2348.00Uncharacterized protein n=1 Tax=Microlunatus parie... [more]
A0A7Y2D1Q8_9BACT2.140e-2346.39Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
A0A4R0JTP3_9ACTN3.740e-2348.45Uncharacterized protein n=3 Tax=Kribbella TaxID=18... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124701contigM-pyrifera_M_contig124701:206..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score92.4
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog223926.28806616
Hectar predicted targeting categoryother localisation
EggNOG OGs1N0VG@1224,1SB5H@1236,1XXIF@135623,2CZQD@1,32T6U@2
Best tax levelVibrionales
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.5629249-CDS-M-pyrifera_M_contig124701:205..5171622815764.5629249-CDS-M-pyrifera_M_contig124701:205..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124701 206..517 -
1692277558.648439-CDS-M-pyrifera_M_contig124701:205..5171692277558.648439-CDS-M-pyrifera_M_contig124701:205..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124701 206..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124701.5029.1prot_M-pyrifera_M_contig124701.5029.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124701 206..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124701.5029.1

>prot_M-pyrifera_M_contig124701.5029.1 ID=prot_M-pyrifera_M_contig124701.5029.1|Name=mRNA_M-pyrifera_M_contig124701.5029.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
YTERLWKLAAQLPVITIEIESLKHLDGVCWFDDDFPPTLRNVVEHFIRME
HVDSHYPIILDPDGQLFDGAHRVAKALSQGETTIQAVKLLELPPPDEIVD
SIY*
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mRNA from alignment at M-pyrifera_M_contig124701:206..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124701.5029.1 ID=mRNA_M-pyrifera_M_contig124701.5029.1|Name=mRNA_M-pyrifera_M_contig124701.5029.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig124701:206..517- (Macrocystis pyrifera P11B4 male)
TATACGGAGCGACTCTGGAAACTGGCGGCACAGTTGCCGGTGATTACGAT CGAGATCGAATCACTCAAACACCTCGATGGCGTCTGCTGGTTCGATGACG ATTTCCCGCCCACTCTCCGTAACGTGGTCGAACATTTCATAAGAATGGAA CACGTCGATTCTCACTATCCGATCATTCTCGATCCGGACGGCCAGCTGTT CGACGGGGCCCATCGCGTGGCGAAAGCACTCAGCCAGGGAGAAACTACAA TCCAGGCAGTGAAACTTCTGGAACTGCCACCCCCCGATGAAATCGTGGAC TCGATCTATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124701:206..517-

>mRNA_M-pyrifera_M_contig124701.5029.1 ID=mRNA_M-pyrifera_M_contig124701.5029.1|Name=mRNA_M-pyrifera_M_contig124701.5029.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig124701:206..517- (Macrocystis pyrifera P11B4 male)
TATACGGAGCGACTCTGGAAACTGGCGGCACAGTTGCCGGTGATTACGAT
CGAGATCGAATCACTCAAACACCTCGATGGCGTCTGCTGGTTCGATGACG
ATTTCCCGCCCACTCTCCGTAACGTGGTCGAACATTTCATAAGAATGGAA
CACGTCGATTCTCACTATCCGATCATTCTCGATCCGGACGGCCAGCTGTT
CGACGGGGCCCATCGCGTGGCGAAAGCACTCAGCCAGGGAGAAACTACAA
TCCAGGCAGTGAAACTTCTGGAACTGCCACCCCCCGATGAAATCGTGGAC
TCGATCTATTAATATACGGAGCGACTCTGGAAACTGGCGGCACAGTTGCC
GGTGATTACGATCGAGATCGAATCACTCAAACACCTCGATGGCGTCTGCT
GGTTCGATGACGATTTCCCGCCCACTCTCCGTAACGTGGTCGAACATTTC
ATAAGAATGGAACACGTCGATTCTCACTATCCGATCATTCTCGATCCGGA
CGGCCAGCTGTTCGACGGGGCCCATCGCGTGGCGAAAGCACTCAGCCAGG
GAGAAACTACAATCCAGGCAGTGAAACTTCTGGAACTGCCACCCCCCGAT
GAAATCGTGGACTCGATCTATTAA
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