mRNA_M-pyrifera_M_contig124691.5027.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124691.5027.1
Unique NamemRNA_M-pyrifera_M_contig124691.5027.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124691.5027.1 vs. uniprot
Match: A0A353WZQ6_9BACT (Uncharacterized protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A353WZQ6_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 1.610e-15
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1 
Query:   22 GEYRFELMPIDSMEEKASADSDLLEFKLNLQRQDGA-DLVAY-DGVKELIQSRIYYYSYRINEAIYLEQENHRSQVSFCHFERSFDLKKGRNFMLAFDKSSVNVSKPYQLVIDSDLLKTGPVKFKI 393
            G+Y+F++  I S E      SDL ++ L + R D   DL+   D   + +Q  +YY+SY   + IYLE EN  +     HFERS+DLK  RNF+L F + + N  +P ++VIDS +  +GPVK +I
Sbjct:   35 GDYKFKINRIPSEE------SDLQQYVLKISRADEQIDLLNNKDLTDKELQQLLYYFSYTFQKDIYLETENGLNPCVLYHFERSYDLKGSRNFILGFTEPNDN--EPKKIVIDSPVFNSGPVKIRI 152
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BLAST of mRNA_M-pyrifera_M_contig124691.5027.1 vs. uniprot
Match: UPI001F45F87E (hypothetical protein n=1 Tax=Fulvivirga sp. W9P-11 TaxID=2904246 RepID=UPI001F45F87E)

HSP 1 Score: 63.2 bits (152), Expect = 1.400e-9
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:  154 KELIQSRIYYYSYRINEAIYLEQENHRSQVSFCHFERSFDLKKGRNFMLAFDKSSVNVSKPYQLVIDSDLLKTGPVKFKIT 396
            K++ + R YY+SY   + IYLEQ+  R      HFE++FDL+  RNF+L FD +   VS    L+IDS     G VK  I+
Sbjct:  105 KKVWEQRAYYFSYNFQDQIYLEQDGQRYPCVMFHFEKAFDLRPERNFVLGFDAA---VSDQSTLLIDSPAFGDGLVKISIS 182
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124691.5027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A353WZQ6_9BACT1.610e-1539.68Uncharacterized protein n=1 Tax=Cytophagales bacte... [more]
UPI001F45F87E1.400e-941.98hypothetical protein n=1 Tax=Fulvivirga sp. W9P-11... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124691contigM-pyrifera_M_contig124691:46..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.480329-CDS-M-pyrifera_M_contig124691:45..4531622815764.480329-CDS-M-pyrifera_M_contig124691:45..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124691 46..453 +
1692277558.627397-CDS-M-pyrifera_M_contig124691:45..4531692277558.627397-CDS-M-pyrifera_M_contig124691:45..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124691 46..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124691.5027.1prot_M-pyrifera_M_contig124691.5027.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124691 46..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124691.5027.1

>prot_M-pyrifera_M_contig124691.5027.1 ID=prot_M-pyrifera_M_contig124691.5027.1|Name=mRNA_M-pyrifera_M_contig124691.5027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
ADYIQQTGEYRFELMPIDSMEEKASADSDLLEFKLNLQRQDGADLVAYDG
VKELIQSRIYYYSYRINEAIYLEQENHRSQVSFCHFERSFDLKKGRNFML
AFDKSSVNVSKPYQLVIDSDLLKTGPVKFKITPNS*
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mRNA from alignment at M-pyrifera_M_contig124691:46..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124691.5027.1 ID=mRNA_M-pyrifera_M_contig124691.5027.1|Name=mRNA_M-pyrifera_M_contig124691.5027.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig124691:46..453+ (Macrocystis pyrifera P11B4 male)
GCTGATTATATCCAACAGACTGGAGAGTATAGATTTGAATTGATGCCTAT
AGATTCGATGGAAGAAAAAGCTTCTGCTGACTCTGATTTATTAGAATTCA
AACTTAATCTACAGCGTCAGGACGGAGCTGATTTAGTAGCCTACGATGGC
GTAAAGGAGTTAATCCAATCTCGAATTTATTACTATTCTTATCGAATCAA
CGAAGCCATTTATTTGGAGCAAGAGAACCATCGATCGCAAGTGAGTTTTT
GCCATTTTGAAAGATCTTTTGATTTAAAAAAGGGAAGAAACTTTATGCTG
GCCTTCGATAAAAGCTCAGTCAATGTGTCTAAACCATATCAGCTGGTGAT
AGACTCTGACCTGCTCAAAACAGGACCTGTAAAATTTAAAATTACACCTA
ACAGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124691:46..453+

>mRNA_M-pyrifera_M_contig124691.5027.1 ID=mRNA_M-pyrifera_M_contig124691.5027.1|Name=mRNA_M-pyrifera_M_contig124691.5027.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig124691:46..453+ (Macrocystis pyrifera P11B4 male)
GCTGATTATATCCAACAGACTGGAGAGTATAGATTTGAATTGATGCCTAT
AGATTCGATGGAAGAAAAAGCTTCTGCTGACTCTGATTTATTAGAATTCA
AACTTAATCTACAGCGTCAGGACGGAGCTGATTTAGTAGCCTACGATGGC
GTAAAGGAGTTAATCCAATCTCGAATTTATTACTATTCTTATCGAATCAA
CGAAGCCATTTATTTGGAGCAAGAGAACCATCGATCGCAAGTGAGTTTTT
GCCATTTTGAAAGATCTTTTGATTTAAAAAAGGGAAGAAACTTTATGCTG
GCCTTCGATAAAAGCTCAGTCAATGTGTCTAAACCATATCAGCTGGTGAT
AGACTCTGACCTGCTCAAAACAGGACCTGTAAAATTTAAAATTACACCTA
ACAGTTAAGCTGATTATATCCAACAGACTGGAGAGTATAGATTTGAATTG
ATGCCTATAGATTCGATGGAAGAAAAAGCTTCTGCTGACTCTGATTTATT
AGAATTCAAACTTAATCTACAGCGTCAGGACGGAGCTGATTTAGTAGCCT
ACGATGGCGTAAAGGAGTTAATCCAATCTCGAATTTATTACTATTCTTAT
CGAATCAACGAAGCCATTTATTTGGAGCAAGAGAACCATCGATCGCAAGT
GAGTTTTTGCCATTTTGAAAGATCTTTTGATTTAAAAAAGGGAAGAAACT
TTATGCTGGCCTTCGATAAAAGCTCAGTCAATGTGTCTAAACCATATCAG
CTGGTGATAGACTCTGACCTGCTCAAAACAGGACCTGTAAAATTTAAAAT
TACACCTAACAGTTAA
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