mRNA_M-pyrifera_M_contig124683.5024.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124683.5024.1
Unique NamemRNA_M-pyrifera_M_contig124683.5024.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A831XQK4_9BACT (AAA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831XQK4_9BACT)

HSP 1 Score: 179 bits (455), Expect = 2.500e-53
Identity = 89/125 (71.20%), Postives = 103/125 (82.40%), Query Frame = 1
Query:    1 TQQHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLKTKRITHDIVLHTIEKTTLPDPEKRA 375
            TQQHKLLNLVFFAQLEW++VL AAPNFEQRIN TYTLEPI F+E + FI FRL QAG  P  G  F + ALRAIHAYAEG+PRV+VTLCRNA+L AAQ+ ++ I  DI+LHTIEKTT+PD  +RA
Sbjct:  159 TQQHKLLNLVFFAQLEWIEVLHAAPNFEQRINTTYTLEPIRFEETRHFIDFRLAQAGVNPDNGVVFADVALRAIHAYAEGNPRVIVTLCRNAMLFAAQVGSREIGQDIILHTIEKTTVPDRARRA 283          
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A7V2Y4X8_9BACT (AAA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y4X8_9BACT)

HSP 1 Score: 170 bits (431), Expect = 1.250e-49
Identity = 83/127 (65.35%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    7 QHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLKTKRITHDIVLHTIEKTTLPDPEKRARVAA 387
            QHKLLNLV  AQLEW+ +L+AAPNFEQRI+ TY L+PI F+E + FI FRL+QAG      PEF++ A++A+HAY EG PR++VTLCRNALL AAQ K + IT +IVL TIEKTTLP+PEKRA+ AA
Sbjct:  161 QHKLLNLVLLAQLEWIDILRAAPNFEQRIDFTYVLKPIPFEETRHFIEFRLRQAGGDGPRAPEFDDAAVQAVHAYTEGVPRMIVTLCRNALLEAAQAKKRHITAEIVLRTIEKTTLPNPEKRAQAAA 287          
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A7Y5C529_9BACT (AAA family ATPase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C529_9BACT)

HSP 1 Score: 158 bits (400), Expect = 9.290e-45
Identity = 80/128 (62.50%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 TQQHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLKTKRITHDIVLHTIEKTTLPDPEKRARVA 384
            T QHKLLNLV FAQLEWM VL+AAPNFEQR+  TYTL  I  ++ +  I FRL+QAG+    GP F++GA+R +HA+A+GSPRV VTL RN LLLA QL+T+ I   IVLHTI++TT+PD  K ARVA
Sbjct:  185 TPQHKLLNLVLFAQLEWMPVLRAAPNFEQRVGTTYTLGSISLEDTRNLIQFRLRQAGSGD-KGPLFDDGAIRVLHAFADGSPRVSVTLARNVLLLAYQLRTRHIGQSIVLHTIQRTTMPDDHKHARVA 311          
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A7Z9HW20_9BACT (AAA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Z9HW20_9BACT)

HSP 1 Score: 143 bits (360), Expect = 1.680e-40
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 TQQHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLKTKRITHDIVLHTIEKTTLPDPEKRA 375
            T QHKLLNLV F QLEW +VL+AAPNF+QRIN+T+TL P++ ++    I FRL  AGA     P F++ A+  IH ++EG+PRV+VT+CRNALL A+Q+    +  +IV HTI+KTTLPD  K A
Sbjct:   88 TPQHKLLNLVLFGQLEWARVLEAAPNFQQRINMTFTLFPLNTEDVGDLIRFRLAHAGATDAQAPVFDDEAVSLIHLFSEGNPRVIVTMCRNALLFASQINKSVVDREIVAHTIDKTTLPDAAKVA 212          
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A7C2LJ71_9FIRM (DUF2075 domain-containing protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2LJ71_9FIRM)

HSP 1 Score: 107 bits (267), Expect = 7.360e-26
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 TQQHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLKTKRITHDIVLHTIEKTTL 354
            T +HKLLNLV FAQ+E +  ++A PNFEQR+N  Y L P+  ++    I FRLQ+AG  P     F+E +L  I+  ++G PR +VT+CRNA++LA ++   RI + IVL+ I   T+
Sbjct:  160 TPEHKLLNLVLFAQMELIPAVKAQPNFEQRVNSAYVLNPLTHEDTVNMIRFRLQKAGRDPSQESLFDEESLATIYESSQGIPREVVTICRNAMVLAKRIGQARIQNSIVLYAINNLTV 277          
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A136M219_9BACT (AAA domain-containing protein n=2 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A136M219_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 2.070e-22
Identity = 51/129 (39.53%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 TQQHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLKTKRITHDIVLHTIEKTTLPDPEKRARVAA 387
            T Q+KL+NLV F QLE + +++A PNFEQRIN T+ L+P+ +++ +  I +RL ++G        FEE + R I  Y+EG PR +V++CRN++++A +++   I + +VL+ I  T       + RVAA
Sbjct:  161 TPQYKLVNLVLFGQLELIPLIKAHPNFEQRINNTFVLKPMSYEDMKGMIRYRLAKSGYSSSV-DMFEEESYRTIFQYSEGIPREIVSICRNSMMIAHRIRRDVIQNSVVLYAINHTMAKGLMSQERVAA 288          
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A660X689_9BACT (AAA domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A660X689_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 2.370e-16
Identity = 43/114 (37.72%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 TQQHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLKTKRITHDIVLHTIE 342
            T Q+KL+ ++FFAQ E+  +L+  PNF  R+++ YTL+P+  ++A   I  RL+ AGA PG    F +GAL  I+  ++G PR M+TLC + L+   + + + +  DIV+  ++
Sbjct:  156 TNQYKLIQVIFFAQPEFRNILKKHPNFADRVSMGYTLKPLSREDAIAMIEHRLKIAGA-PGGIKFFTDGALELIYLNSQGYPRKMITLCHDCLIEMIRQEKQMVDADIVISLLK 268          
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A832CAY1_9PROT (AAA family ATPase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A832CAY1_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 3.250e-16
Identity = 42/122 (34.43%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    1 TQQHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLKTKRITHDIVLHTIEKTTLPDPE 366
            T ++KLL L+  AQ+E++ V+    NF  R+N++YT+ P+  +E +  I FRLQ+AG  PG    F++ A+  IH    G PR ++  C +AL++    + + +  +IV    EK+   D E
Sbjct:  160 TNEYKLLQLIILAQMEFLDVVANHKNFMDRVNISYTINPLSVEETRDLIQFRLQKAGLPPGQ-TLFDDEAIEYIHLQTRGYPRKIIQFCHHALVMTLIHEKRMVDLEIVQAVQEKSLFMDDE 280          
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A1V4XIS2_9DELT (Archaeal ATPase n=1 Tax=Syntrophaceae bacterium PtaB.Bin095 TaxID=1811717 RepID=A0A1V4XIS2_9DELT)

HSP 1 Score: 78.6 bits (192), Expect = 1.920e-14
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 TQQHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEG-ALRAIHAYAEGSPRVMVTLCRNALL 282
            T ++KLL +V FAQ E+ Q L    NF  R+NL YTLEP++  E ++ I FR+ +AG +PG+ PE   G  L A++    G PR ++TLC   +L
Sbjct:  168 TNENKLLQIVIFAQREFRQTLDRIENFADRVNLLYTLEPLNLQETREMIRFRIARAG-EPGSVPELFSGLGLLAVYRATGGYPRKIITLCHQVIL 261          
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Match: A0A2M7W8F8_9PROT (AAA domain-containing protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2M7W8F8_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 2.200e-14
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   16 LLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIAFRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLKTKRITHDIVLHTIEK 345
            L+ L+F  Q E   ++ A P F QRI + Y L P+DF E  ++I  RL+ AG   G+ P F   A+  IH  A G PR++  +C  ALLL   L+ K I  D VL  +E+
Sbjct:  183 LMTLLFVGQPELRGMIDAIPQFSQRIGIRYHLHPMDFMETARYIVHRLKIAG---GSRPLFTRSAVELIHRAANGIPRIINNICDLALLLGMSLQAKVIDQDTVLRVLEE 289          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124683.5024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A831XQK4_9BACT2.500e-5371.20AAA domain-containing protein n=1 Tax=Candidatus H... [more]
A0A7V2Y4X8_9BACT1.250e-4965.35AAA domain-containing protein n=1 Tax=Candidatus H... [more]
A0A7Y5C529_9BACT9.290e-4562.50AAA family ATPase n=1 Tax=Candidatus Hydrogenedent... [more]
A0A7Z9HW20_9BACT1.680e-4055.20AAA domain-containing protein n=1 Tax=Candidatus H... [more]
A0A7C2LJ71_9FIRM7.360e-2644.92DUF2075 domain-containing protein n=1 Tax=Firmicut... [more]
A0A136M219_9BACT2.070e-2239.53AAA domain-containing protein n=2 Tax=unclassified... [more]
A0A660X689_9BACT2.370e-1637.72AAA domain-containing protein n=1 Tax=Candidatus M... [more]
A0A832CAY1_9PROT3.250e-1634.43AAA family ATPase n=1 Tax=Proteobacteria bacterium... [more]
A0A1V4XIS2_9DELT1.920e-1443.16Archaeal ATPase n=1 Tax=Syntrophaceae bacterium Pt... [more]
A0A2M7W8F8_9PROT2.200e-1440.00AAA domain-containing protein n=2 Tax=Proteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124683contigM-pyrifera_M_contig124683:2..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.5
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog596152.DesU5LDRAFT_3135
KEGG koko:K02450
KEGG TC9.B.42
KEGG ModuleM00331
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.AAA domain
EggNOG OGs1MU3G@1224,2MB3A@213115,2WISQ@28221,42QBH@68525,COG3267@1,COG3267@2
COG Functional cat.U
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02044
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.373482-CDS-M-pyrifera_M_contig124683:1..3881622815764.373482-CDS-M-pyrifera_M_contig124683:1..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124683 2..388 +
1692277558.5904653-CDS-M-pyrifera_M_contig124683:1..3881692277558.5904653-CDS-M-pyrifera_M_contig124683:1..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124683 2..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124683.5024.1prot_M-pyrifera_M_contig124683.5024.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124683 2..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124683.5024.1

>prot_M-pyrifera_M_contig124683.5024.1 ID=prot_M-pyrifera_M_contig124683.5024.1|Name=mRNA_M-pyrifera_M_contig124683.5024.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
TQQHKLLNLVFFAQLEWMQVLQAAPNFEQRINLTYTLEPIDFDEAQQFIA
FRLQQAGAQPGTGPEFEEGALRAIHAYAEGSPRVMVTLCRNALLLAAQLK
TKRITHDIVLHTIEKTTLPDPEKRARVAA
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mRNA from alignment at M-pyrifera_M_contig124683:2..388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124683.5024.1 ID=mRNA_M-pyrifera_M_contig124683.5024.1|Name=mRNA_M-pyrifera_M_contig124683.5024.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig124683:2..388+ (Macrocystis pyrifera P11B4 male)
ACCCAGCAACACAAATTACTGAACCTGGTGTTTTTTGCGCAGCTGGAATG GATGCAGGTCTTACAGGCCGCACCCAATTTTGAGCAACGGATCAACCTGA CCTATACGCTGGAACCCATCGATTTTGATGAGGCCCAGCAGTTTATTGCC TTTCGCTTACAGCAGGCGGGAGCCCAGCCGGGCACGGGCCCCGAGTTTGA AGAGGGCGCCCTGCGGGCCATCCACGCCTACGCCGAAGGAAGTCCTCGTG TCATGGTAACCCTGTGTCGAAATGCCCTTCTATTGGCGGCCCAGCTAAAG ACCAAGCGCATAACGCACGATATAGTGTTACATACGATAGAGAAGACCAC GTTACCCGATCCCGAAAAGCGTGCCCGCGTTGCGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124683:2..388+

>mRNA_M-pyrifera_M_contig124683.5024.1 ID=mRNA_M-pyrifera_M_contig124683.5024.1|Name=mRNA_M-pyrifera_M_contig124683.5024.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig124683:2..388+ (Macrocystis pyrifera P11B4 male)
ACCCAGCAACACAAATTACTGAACCTGGTGTTTTTTGCGCAGCTGGAATG
GATGCAGGTCTTACAGGCCGCACCCAATTTTGAGCAACGGATCAACCTGA
CCTATACGCTGGAACCCATCGATTTTGATGAGGCCCAGCAGTTTATTGCC
TTTCGCTTACAGCAGGCGGGAGCCCAGCCGGGCACGGGCCCCGAGTTTGA
AGAGGGCGCCCTGCGGGCCATCCACGCCTACGCCGAAGGAAGTCCTCGTG
TCATGGTAACCCTGTGTCGAAATGCCCTTCTATTGGCGGCCCAGCTAAAG
ACCAAGCGCATAACGCACGATATAGTGTTACATACGATAGAGAAGACCAC
GTTACCCGATCCCGAAAAGCGTGCCCGCGTTGCGGCAACCCAGCAACACA
AATTACTGAACCTGGTGTTTTTTGCGCAGCTGGAATGGATGCAGGTCTTA
CAGGCCGCACCCAATTTTGAGCAACGGATCAACCTGACCTATACGCTGGA
ACCCATCGATTTTGATGAGGCCCAGCAGTTTATTGCCTTTCGCTTACAGC
AGGCGGGAGCCCAGCCGGGCACGGGCCCCGAGTTTGAAGAGGGCGCCCTG
CGGGCCATCCACGCCTACGCCGAAGGAAGTCCTCGTGTCATGGTAACCCT
GTGTCGAAATGCCCTTCTATTGGCGGCCCAGCTAAAGACCAAGCGCATAA
CGCACGATATAGTGTTACATACGATAGAGAAGACCACGTTACCCGATCCC
GAAAAGCGTGCCCGCGTTGCGGCA
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