mRNA_M-pyrifera_M_contig124670.5020.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124670.5020.1
Unique NamemRNA_M-pyrifera_M_contig124670.5020.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124670.5020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124670contigM-pyrifera_M_contig124670:123..443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.2183034-CDS-M-pyrifera_M_contig124670:122..4431622815764.2183034-CDS-M-pyrifera_M_contig124670:122..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124670 123..443 -
1692277558.5410845-CDS-M-pyrifera_M_contig124670:122..4431692277558.5410845-CDS-M-pyrifera_M_contig124670:122..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124670 123..443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124670.5020.1prot_M-pyrifera_M_contig124670.5020.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124670 123..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124670.5020.1

>prot_M-pyrifera_M_contig124670.5020.1 ID=prot_M-pyrifera_M_contig124670.5020.1|Name=mRNA_M-pyrifera_M_contig124670.5020.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
PEVDDSHYPPEEPDEDSSHPSPLILSLSPTSNSSGSVRMRDASTGEEADV
NVGGNFGVWKVLGFMGSSIVVIEAQFSRWSLMVWSGVDGDVRRTRSGVGM
ISGVFQP
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mRNA from alignment at M-pyrifera_M_contig124670:123..443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124670.5020.1 ID=mRNA_M-pyrifera_M_contig124670.5020.1|Name=mRNA_M-pyrifera_M_contig124670.5020.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig124670:123..443- (Macrocystis pyrifera P11B4 male)
CCAGAGGTAGATGATTCACATTATCCCCCAGAAGAGCCCGATGAAGACTC
ATCGCATCCAAGTCCACTCATTCTCTCACTTTCTCCAACGTCAAATTCAA
GTGGAAGTGTACGAATGCGTGATGCATCCACAGGTGAGGAAGCTGATGTC
AATGTGGGTGGAAACTTTGGTGTTTGGAAGGTGTTGGGGTTTATGGGAAG
CAGCATCGTTGTGATCGAAGCACAATTTTCACGATGGAGTCTGATGGTTT
GGTCAGGCGTGGATGGAGATGTGCGTCGCACTCGTTCTGGAGTTGGGATG
ATTTCTGGAGTGTTTCAACCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124670:123..443-

>mRNA_M-pyrifera_M_contig124670.5020.1 ID=mRNA_M-pyrifera_M_contig124670.5020.1|Name=mRNA_M-pyrifera_M_contig124670.5020.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig124670:123..443- (Macrocystis pyrifera P11B4 male)
CCAGAGGTAGATGATTCACATTATCCCCCAGAAGAGCCCGATGAAGACTC
ATCGCATCCAAGTCCACTCATTCTCTCACTTTCTCCAACGTCAAATTCAA
GTGGAAGTGTACGAATGCGTGATGCATCCACAGGTGAGGAAGCTGATGTC
AATGTGGGTGGAAACTTTGGTGTTTGGAAGGTGTTGGGGTTTATGGGAAG
CAGCATCGTTGTGATCGAAGCACAATTTTCACGATGGAGTCTGATGGTTT
GGTCAGGCGTGGATGGAGATGTGCGTCGCACTCGTTCTGGAGTTGGGATG
ATTTCTGGAGTGTTTCAACCTCCAGAGGTAGATGATTCACATTATCCCCC
AGAAGAGCCCGATGAAGACTCATCGCATCCAAGTCCACTCATTCTCTCAC
TTTCTCCAACGTCAAATTCAAGTGGAAGTGTACGAATGCGTGATGCATCC
ACAGGTGAGGAAGCTGATGTCAATGTGGGTGGAAACTTTGGTGTTTGGAA
GGTGTTGGGGTTTATGGGAAGCAGCATCGTTGTGATCGAAGCACAATTTT
CACGATGGAGTCTGATGGTTTGGTCAGGCGTGGATGGAGATGTGCGTCGC
ACTCGTTCTGGAGTTGGGATGATTTCTGGAGTGTTTCAACCT
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