mRNA_M-pyrifera_M_contig124668.5019.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124668.5019.1
Unique NamemRNA_M-pyrifera_M_contig124668.5019.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: A0A2D6U5S8_9ACTN (Dihydrofolate reductase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U5S8_9ACTN)

HSP 1 Score: 228 bits (580), Expect = 3.170e-72
Identity = 120/143 (83.92%), Postives = 129/143 (90.21%), Query Frame = 1
Query:    1 GSDPSPDSQAAAIADGATIVGVDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELGVEIDL 429
            GSDP P+SQAAA ADG TIV +DELMATS+VVSVN PL   T HLVNAERLA MP GGY+VNTGRG+VVDT ALAA+LRSGHLAGAAVDVLEEEPP+PDNPIRGIDTVIFGSHNASNTLEAS RVH+RSI NLARELGVEI+L
Sbjct:  172 GSDPMPESQAAAQADGCTIVDIDELMATSHVVSVNAPLNDSTRHLVNAERLALMPPGGYLVNTGRGEVVDTTALAASLRSGHLAGAAVDVLEEEPPSPDNPIRGIDTVIFGSHNASNTLEASVRVHKRSIANLARELGVEIEL 314          
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: A0A800IDQ7_9ACTN (Dihydrofolate reductase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800IDQ7_9ACTN)

HSP 1 Score: 179 bits (453), Expect = 4.610e-53
Identity = 95/143 (66.43%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    1 GSDPSPDSQAAAIADGATIVGVDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELGVEIDL 429
            GSDPS +SQ AA   GA +V  ++LM+ S++VSVNCPL P T HL+N + LA M  GG++VN GRG VV+T AL  AL++G LAGAAVDVLEEEPPAPD+PIR +  VIFGSHNASNTLEASARVH R+++NLA ELGVE+DL
Sbjct:  172 GSDPSSESQKAATELGAQVVPFEDLMSRSDIVSVNCPLNPSTQHLINDQHLALMKPGGWLVNVGRGAVVETPALVRALQNGTLAGAAVDVLEEEPPAPDDPIRLLKNVIFGSHNASNTLEASARVHVRALKNLAHELGVELDL 314          
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: A0A800LR20_9ACTN (Dihydrofolate reductase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800LR20_9ACTN)

HSP 1 Score: 178 bits (451), Expect = 9.210e-53
Identity = 95/143 (66.43%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    1 GSDPSPDSQAAAIADGATIVGVDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELGVEIDL 429
            GSDPS +SQ  A   GA +V  +ELM  S++VSVNCPL P T HL+N E L  M  GG++VN GRG VV+T AL  AL+SG LAGAAVDVLEEEPPA D+PIRG+  VIFGSHNASNTLEASARVH R+++NLA+ELGVE++L
Sbjct:  172 GSDPSSESQQLAAELGAQVVPFEELMQRSDIVSVNCPLNPSTYHLINDEHLELMKPGGWLVNVGRGAVVETPALVRALQSGILAGAAVDVLEEEPPASDDPIRGLSNVIFGSHNASNTLEASARVHVRALKNLAKELGVELEL 314          
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: UPI00024A483C (phosphoglycerate dehydrogenase n=1 Tax=Mycolicibacterium tusciae TaxID=75922 RepID=UPI00024A483C)

HSP 1 Score: 118 bits (295), Expect = 1.660e-29
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   43 DGATIVGVDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELG 414
            +G +IVG+DELM +S  + + CPLTP+T+ L+NA+RLA++  G Y+VN  RG VV   AL   LRSG LAGAA+DV E EP    + +R +  V+ G+HNASNT E  AR    +++ L  ELG
Sbjct:  186 EGVSIVGLDELMLSSKFIVLACPLTPETVQLINADRLASVRPGAYLVNVARGPVVQEEALVEVLRSGRLAGAALDVFETEPLPHTSELRTLPNVVLGAHNASNTREGVARASNAAVDFLLEELG 309          
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: UPI001F47E4FC (phosphoglycerate dehydrogenase n=1 Tax=Xanthobacter agilis TaxID=47492 RepID=UPI001F47E4FC)

HSP 1 Score: 115 bits (287), Expect = 3.130e-28
Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   43 DGATIVGVDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELGVE 420
            D  T  G+ EL+A S+ V + C +T D +HL+NA  L  M  G  +VN GRG +VD  AL AAL+SGHL GA +DV E EP   D+P+RG D V+ GSHNA+N   A   VH R++E L + LG+E
Sbjct:  184 DYVTYAGLPELLAQSDFVVLCCNMTQDNVHLINAGTLQQMKPGAILVNVGRGGLVDEPALIAALQSGHLGGAGLDVFEAEPLPADSPLRGFDNVVLGSHNANNQQAAIEAVHVRTLECLYQGLGLE 309          
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: A0A1H4CXR1_9RHOB (D-3-phosphoglycerate dehydrogenase n=1 Tax=Rubrimonas cliftonensis TaxID=89524 RepID=A0A1H4CXR1_9RHOB)

HSP 1 Score: 112 bits (280), Expect = 2.540e-27
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   64 VDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELGVEI 423
            ++E+ A S+VV V C LTP T  LV+A  LAAM     +VN  RG +VD AAL AALR+G +AGAA+DV E EP  PD+P+  +DTV+ GSHNA+N ++A   VH R++ NL   +   +
Sbjct:  185 LEEIAAGSDVVCVACALTPHTRGLVDAAFLAAMRPDAVLVNVARGPIVDEAALLAALRAGRIAGAALDVFETEPLGPDHPLAALDTVVLGSHNANNGVQAVEAVHARTLRNLVEGMAAPV 304          
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: UPI00040BCE3E (phosphoglycerate dehydrogenase n=1 Tax=Niveispirillum irakense TaxID=34011 RepID=UPI00040BCE3E)

HSP 1 Score: 112 bits (280), Expect = 3.170e-27
Identity = 56/124 (45.16%), Postives = 81/124 (65.32%), Query Frame = 1
Query:   46 GATIVGVDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELGV 417
            G T + + +++   + + V C LTPD+ HL+ A+  A +  G YV+N  RG +++  AL AAL++GHLAGA +DV EEEP   D+P+RG D VI G+HN SNT E   RV+  ++ NL R LG+
Sbjct:  189 GLTRLPLADMLPQVDFLVVTCSLTPDSHHLLEADAFALLKKGAYVINVSRGSIINETALIAALQTGHLAGAGLDVFEEEPLPADSPLRGFDNVILGAHNGSNTHEGVDRVNVAALRNLLRGLGI 312          
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: A0A7Y4XKG0_HYPSQ (Phosphoglycerate dehydrogenase n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y4XKG0_HYPSQ)

HSP 1 Score: 112 bits (280), Expect = 3.460e-27
Identity = 56/117 (47.86%), Postives = 82/117 (70.09%), Query Frame = 1
Query:   64 VDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELG 414
            +D+++A S+VV + C LTP++ HL+N++ LAAM  G Y+VN GRG +VD  AL AAL+SGHLAGA +DV E EP    +P+R ++  + G+HN SNT EA  RV+  ++E   + +G
Sbjct:  196 LDDVLAKSDVVLLACALTPESHHLINSQALAAMQPGSYLVNVGRGPLVDEPALVAALQSGHLAGAGLDVFEVEPLPASSPLRALENCVLGTHNGSNTTEAVDRVNGMTVEIAMQIVG 312          
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: A4TF35_MYCGI (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein n=1 Tax=Mycolicibacterium gilvum (strain PYR-GCK) TaxID=350054 RepID=A4TF35_MYCGI)

HSP 1 Score: 111 bits (277), Expect = 5.930e-27
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   46 GATIVGVDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELG 414
            G ++V +DEL+ATS  V + CPLTP+T HL++A+RLA M +  ++VN  RG VV  AAL  AL++G LAGAA+DV E EP   D+ +R +  V+ G+HN SNT E   R    ++E L  EL 
Sbjct:  175 GVSMVELDELLATSRFVVLACPLTPETFHLIDADRLAGMRSDSFLVNVARGPVVLEAALIDALKAGRLAGAALDVFEVEPLPLDSELRTLPNVVLGAHNGSNTREGVVRASNAAVEFLIEELA 297          
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Match: A0A524QNG4_9GAMM (C-terminal binding protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A524QNG4_9GAMM)

HSP 1 Score: 111 bits (278), Expect = 7.030e-27
Identity = 58/118 (49.15%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   46 GATIVGVDELMATSNVVSVNCPLTPDTLHLVNAERLAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDNPIRGIDTVIFGSHNASNTLEASARVHRRSIENL 399
            G  +VG++EL+  S+ VS+NCPLT +T HL+ A +LA M    Y++N  RG VVD AAL  AL +G + GAA+DVLE+EPP+PD+P+  +D VIF  H AS T EA  ++ R +  N+
Sbjct:  189 GIELVGLEELLRRSDYVSLNCPLTAETHHLIGAAQLALMKPTAYLINMARGPVVDQAALYQALVAGTIQGAALDVLEQEPPSPDDPLLKLDNVIFTPHTASWTAEAGEQLRRDATRNV 306          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124668.5019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6U5S8_9ACTN3.170e-7283.92Dihydrofolate reductase n=1 Tax=Acidimicrobiaceae ... [more]
A0A800IDQ7_9ACTN4.610e-5366.43Dihydrofolate reductase n=1 Tax=Acidimicrobiia bac... [more]
A0A800LR20_9ACTN9.210e-5366.43Dihydrofolate reductase n=1 Tax=Acidimicrobiia bac... [more]
UPI00024A483C1.660e-2949.19phosphoglycerate dehydrogenase n=1 Tax=Mycolicibac... [more]
UPI001F47E4FC3.130e-2849.21phosphoglycerate dehydrogenase n=1 Tax=Xanthobacte... [more]
A0A1H4CXR1_9RHOB2.540e-2749.17D-3-phosphoglycerate dehydrogenase n=1 Tax=Rubrimo... [more]
UPI00040BCE3E3.170e-2745.16phosphoglycerate dehydrogenase n=1 Tax=Niveispiril... [more]
A0A7Y4XKG0_HYPSQ3.460e-2747.86Phosphoglycerate dehydrogenase n=1 Tax=Hyphomicrob... [more]
A4TF35_MYCGI5.930e-2747.97D-isomer specific 2-hydroxyacid dehydrogenase, NAD... [more]
A0A524QNG4_9GAMM7.030e-2749.15C-terminal binding protein n=1 Tax=Xanthomonadales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124668contigM-pyrifera_M_contig124668:3..437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score120.2
Seed ortholog evalue8.2e-25
Seed eggNOG ortholog710687.KI912270_gene2959
KEGG rclassRC00031
KEGG koko:K00058
KEGG ReactionR01513
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
Hectar predicted targeting categoryother localisation
EggNOG free text desc.D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
EggNOG OGs237RY@1762,2IEYC@201174,COG0111@1,COG0111@2
EC1.1.1.399,1.1.1.95
COG Functional cat.EH
Best tax levelMycobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size435
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.1796854-CDS-M-pyrifera_M_contig124668:2..4371622815764.1796854-CDS-M-pyrifera_M_contig124668:2..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124668 3..437 +
1692277558.5292146-CDS-M-pyrifera_M_contig124668:2..4371692277558.5292146-CDS-M-pyrifera_M_contig124668:2..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124668 3..437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124668.5019.1prot_M-pyrifera_M_contig124668.5019.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124668 3..437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124668.5019.1

>prot_M-pyrifera_M_contig124668.5019.1 ID=prot_M-pyrifera_M_contig124668.5019.1|Name=mRNA_M-pyrifera_M_contig124668.5019.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
GSDPSPDSQAAAIADGATIVGVDELMATSNVVSVNCPLTPDTLHLVNAER
LAAMPAGGYVVNTGRGDVVDTAALAAALRSGHLAGAAVDVLEEEPPAPDN
PIRGIDTVIFGSHNASNTLEASARVHRRSIENLARELGVEIDLS*
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mRNA from alignment at M-pyrifera_M_contig124668:3..437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124668.5019.1 ID=mRNA_M-pyrifera_M_contig124668.5019.1|Name=mRNA_M-pyrifera_M_contig124668.5019.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig124668:3..437+ (Macrocystis pyrifera P11B4 male)
GGGTCGGACCCGTCGCCCGACAGCCAGGCCGCAGCCATCGCCGATGGAGC GACCATCGTCGGGGTCGACGAACTCATGGCGACCAGCAACGTCGTGTCGG TCAACTGCCCCCTGACGCCCGACACACTGCACCTCGTCAACGCCGAACGG CTCGCAGCGATGCCGGCCGGTGGCTATGTCGTGAACACGGGACGCGGCGA CGTGGTCGACACGGCCGCTCTGGCCGCCGCCTTGCGTTCAGGCCACCTGG CGGGAGCCGCAGTCGACGTGCTCGAGGAAGAGCCCCCCGCGCCGGACAAC CCCATCCGTGGGATCGACACCGTGATCTTCGGCAGCCACAACGCGTCCAA CACGCTCGAAGCCTCGGCTCGGGTCCATCGCCGGTCGATCGAGAACCTGG CTCGCGAGCTGGGTGTCGAGATCGACCTGTCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124668:3..437+

>mRNA_M-pyrifera_M_contig124668.5019.1 ID=mRNA_M-pyrifera_M_contig124668.5019.1|Name=mRNA_M-pyrifera_M_contig124668.5019.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig124668:3..437+ (Macrocystis pyrifera P11B4 male)
GGGTCGGACCCGTCGCCCGACAGCCAGGCCGCAGCCATCGCCGATGGAGC
GACCATCGTCGGGGTCGACGAACTCATGGCGACCAGCAACGTCGTGTCGG
TCAACTGCCCCCTGACGCCCGACACACTGCACCTCGTCAACGCCGAACGG
CTCGCAGCGATGCCGGCCGGTGGCTATGTCGTGAACACGGGACGCGGCGA
CGTGGTCGACACGGCCGCTCTGGCCGCCGCCTTGCGTTCAGGCCACCTGG
CGGGAGCCGCAGTCGACGTGCTCGAGGAAGAGCCCCCCGCGCCGGACAAC
CCCATCCGTGGGATCGACACCGTGATCTTCGGCAGCCACAACGCGTCCAA
CACGCTCGAAGCCTCGGCTCGGGTCCATCGCCGGTCGATCGAGAACCTGG
CTCGCGAGCTGGGTGTCGAGATCGACCTGTCATGAGGGTCGGACCCGTCG
CCCGACAGCCAGGCCGCAGCCATCGCCGATGGAGCGACCATCGTCGGGGT
CGACGAACTCATGGCGACCAGCAACGTCGTGTCGGTCAACTGCCCCCTGA
CGCCCGACACACTGCACCTCGTCAACGCCGAACGGCTCGCAGCGATGCCG
GCCGGTGGCTATGTCGTGAACACGGGACGCGGCGACGTGGTCGACACGGC
CGCTCTGGCCGCCGCCTTGCGTTCAGGCCACCTGGCGGGAGCCGCAGTCG
ACGTGCTCGAGGAAGAGCCCCCCGCGCCGGACAACCCCATCCGTGGGATC
GACACCGTGATCTTCGGCAGCCACAACGCGTCCAACACGCTCGAAGCCTC
GGCTCGGGTCCATCGCCGGTCGATCGAGAACCTGGCTCGCGAGCTGGGTG
TCGAGATCGACCTGTCATGA
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