mRNA_M-pyrifera_M_contig124664.5018.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124664.5018.1
Unique NamemRNA_M-pyrifera_M_contig124664.5018.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A5A8E9Y4_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E9Y4_CAFRO)

HSP 1 Score: 77.4 bits (189), Expect = 1.080e-13
Identity = 56/145 (38.62%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   34 VSLLGFLWSEWDWGSESSILRPE---GDVVTAAETVHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALLPLPRQFRVELQRVHLLDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNILDI 459
            +S L FL    DWGS    ++P+    DV T    V     VP  LE  +  G++ + D LLH V L PIRV +++ S  + LL         L R HL D LR   A++ V  L+Q  +  +YH IRG  A +KLYV+FNIL++
Sbjct:   99 LSALQFLLGSLDWGS----VQPDEAFSDVPTPVSLVFQ---VPWHLEQCLWLGVVIALDNLLHVVTLLPIRVASTVVSGVVQLLR-GTGLDSRLHRAHLFDALRFATALLGVYTLSQFEVGWMYHTIRGESAPVKLYVLFNILEV 235          
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A5A8CCW7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CCW7_CAFRO)

HSP 1 Score: 77.4 bits (189), Expect = 1.100e-13
Identity = 56/145 (38.62%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   34 VSLLGFLWSEWDWGSESSILRPE---GDVVTAAETVHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALLPLPRQFRVELQRVHLLDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNILDI 459
            +S L FL    DWGS    ++P+    DV T    V     VP  LE  +  G++ + D LLH V L PIRV +++ S  + LL         L R HL D LR   A++ V  L+Q  +  +YH IRG  A +KLYV+FNIL++
Sbjct:   37 LSALQFLLGSLDWGS----VQPDEAFSDVPTPVSLVFQ---VPWHLEQCLWLGVVIALDNLLHVVTLLPIRVASTVVSGVVQLLR-GTGLDSRLHRAHLFDALRFATALLGVYTLSQFEVGWMYHTIRGESAPVKLYVLFNILEV 173          
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A5A8CNX3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNX3_CAFRO)

HSP 1 Score: 77.4 bits (189), Expect = 1.110e-13
Identity = 56/145 (38.62%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   34 VSLLGFLWSEWDWGSESSILRPE---GDVVTAAETVHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALLPLPRQFRVELQRVHLLDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNILDI 459
            +S L FL    DWGS    ++P+    DV T    V     VP  LE  +  G++ + D LLH V L PIRV +++ S  + LL         L R HL D LR   A++ V  L+Q  +  +YH IRG  A +KLYV+FNIL++
Sbjct:   99 LSALQFLLGSLDWGS----VQPDEAFSDVPTPVSLVFQ---VPWHLEQCLWLGVVIALDNLLHVVTLLPIRVASTVVSGVVQLLR-GTGLDSRLHRAHLFDALRFATALLGVYTLSQFEVGWMYHTIRGESAPVKLYVLFNILEV 235          
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A7S3PFZ7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFZ7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.510e-13
Identity = 50/123 (40.65%), Postives = 70/123 (56.91%), Query Frame = 1
Query:  109 VVTAAETVHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFL-ALLPL-----PRQFRVELQRVHLLDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNILDI 459
            ++ A + + +F+ VP+ LE  +  G     D LL  V   PIR++ +L  LF  ALLP       R   V   R  L D+LRG   +++ L L Q+ MSQ+YH++RG    IKLYVMFN+LDI
Sbjct:  161 LLNAKDDMFNFIRVPLHLEQLMFHGFFMCLDSLLFMVTYLPIRIMRALYLLFYTALLPKHVRERSRLLNVRFHRTQLYDLLRGSIIVIAFLALLQVQMSQIYHFVRGQ-TFIKLYVMFNMLDI 282          
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A7S2RIS4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RIS4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.450e-13
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   34 VSLLGFLWSEWDWGSESSILRPEGDVVTAAETVHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALLP--LPRQFRVELQRVHLLDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNILDI 459
            +    FLW   D G E    +     V+  + V +F+ VP+ +E  + +G     D LL  +   P+R++ ++  L L +    LP +FR    R  L DVLR +   V+ + L Q+ MS++YH++RG  A IKLYV+FN+LDI
Sbjct:  356 IGFFDFLWH--DLGCEPEEDKISSKYVSVEDDVFNFIRVPLEVESLLFYGFFMCLDSLLFVIVYLPLRMLRAVLLLVLTVFVPRLPERFRFH--RTQLYDVLRIVMLSVAFVFLLQVHMSRIYHYVRGQ-AFIKLYVIFNMLDI 494          
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A267DP20_9PLAT (Uncharacterized protein (Fragment) n=7 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DP20_9PLAT)

HSP 1 Score: 72.4 bits (176), Expect = 6.090e-12
Identity = 61/166 (36.75%), Postives = 82/166 (49.40%), Query Frame = 1
Query:    1 GVGGGVGGGRGVSLLG-----FLWSEWDWGSESSILRPEGDVVTAAET--VHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALLPLPRQFRVELQRVHLL-----DVLRGLAAIVSVLLLAQMPMSQV-YHWIRGGGATIKLYVMFNILDI 459
            G GGG GG  G  LL       LWS       S+   P+ D    A    V+ F+ +P+A+E F+ FG+LA  D LLH   L P+R   +L  LF               R HLL     D+L GL  +V+  L+ Q+  S V YH+IR   + IKLY+ FN+L+I
Sbjct:   19 GSGGGNGGHFGAPLLAQPPRRSLWSSLRAEVTSAYGGPDDDEKLRAHRHRVYTFLTIPLAMERFIQFGLLACLDTLLHLCTLLPLRCAYALWRLFYG-------------RAHLLHSQKSDLLHGLLLVVTTCLIVQLTDSSVIYHFIRSQ-SVIKLYIFFNMLEI 170          
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A2R5GBA1_9STRA (Transmembrane anterior posterior transformation protein 1-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBA1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.890e-12
Identity = 48/148 (32.43%), Postives = 80/148 (54.05%), Query Frame = 1
Query:   22 GGRGVSLLGFLWSEWDWGSESSILRPEGDVVTAAETVHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALLPLPRQF--RVELQRVHLLDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNILDI 459
            GG  VS   ++W +  + +E        +  +  + V +F+ VP+ +E  + FG     D LL  +   P+RVV +L  L   L+ +P ++    +  R  L D+LR     ++  +L Q+ MS++YH++RG  A IKLYV+FN+LDI
Sbjct:  445 GGSPVSFFDWVWQDLGFETEEDQAFSSKNA-SVEDDVFNFIRVPLEVEKLLIFGFFLCCDSLLFVLVYLPVRVVRALFLLVCTLI-VPSRYGAHFKFHRTQLYDLLRASIIAIAFAVLLQVHMSRIYHYVRGQ-AFIKLYVIFNMLDI 589          
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A5E8BXB8_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BXB8_9ASCO)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-11
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  124 ETVHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALLPLPRQFRVELQRVHL---LDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNILDI 459
            E + +F+ +P  LE  + FG LA  D  L+   + P+R   ++  LFL      R FR++ Q++ L   +D+++G+  +  + LL Q+  S++YH IRG  A IKLYVMFN+L+I
Sbjct:  299 EQLGNFIRLPFYLERVIIFGSLACFDSFLYIFTILPLRFCYAIIHLFL------RMFRLKKQKIPLTRKIDIIKGIVFLAVLYLLMQLDTSKIYHGIRGQSA-IKLYVMFNVLEI 406          
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A0E9NCF7_SAICN (Uncharacterized protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NCF7_SAICN)

HSP 1 Score: 69.7 bits (169), Expect = 5.510e-11
Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  106 DVVTAAETVHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALL------PLPRQFRVELQRVHLLDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNILDI 459
            D+    E V +F+ +P ALE  + FG L   D  L+   + P+R + +L SLF +LL      P+P      L+     D+LR L  ++S   L+    S++YH IRG  A+IKLYV+FN+L++
Sbjct:  200 DIAVKQERVSNFLKIPGALEEVMAFGWLVCLDAFLYTFTILPLRFLLALPSLFSSLLSYTPIPPIPSSPPSHLKTSQKHDLLRFLLVLLSTSFLSLFDASKMYHTIRGQ-ASIKLYVIFNLLEV 322          
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Match: A0A7S0J7C5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J7C5_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 1.310e-10
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  106 DVVTAAETVHDFVHVPMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALLPLPRQFRVELQRVHLLDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNILDI 459
            D+    E +++F +VP  LE  + FG LA  D  +      PIRVV++L +L     P P Q R         D+LRG    +   LL ++ MSQ YH +R   +TIKLYV+FNIL+I
Sbjct:  124 DLQRRREGIYNFFYVPRNLERLLLFGYLACFDSFVQQFTFLPIRVVSALTTLLCWHRPTPAQKR---------DLLRGTLIFLVSFLLLRINMSQTYHNVRNQ-STIKLYVVFNILEI 231          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124664.5018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E9Y4_CAFRO1.080e-1338.62Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8CCW7_CAFRO1.100e-1338.62Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CNX3_CAFRO1.110e-1338.62Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S3PFZ7_9STRA1.510e-1340.65Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2RIS4_9STRA5.450e-1334.72Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A267DP20_9PLAT6.090e-1236.75Uncharacterized protein (Fragment) n=7 Tax=Macrost... [more]
A0A2R5GBA1_9STRA8.890e-1232.43Transmembrane anterior posterior transformation pr... [more]
A0A5E8BXB8_9ASCO1.220e-1137.39Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A0E9NCF7_SAICN5.510e-1136.29Uncharacterized protein n=2 Tax=Saitoella complica... [more]
A0A7S0J7C5_9EUKA1.310e-1038.98Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124664contigM-pyrifera_M_contig124664:60..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.5
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog109760.SPPG_02703T1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0006457,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0071944,GO:0098827
EggNOG free text desc.cytomegalovirus gh-receptor family protein
EggNOG OGs38EQ9@33154,3NTVI@4751,KOG2490@1,KOG2490@2759
Ec32 ortholog descriptionMembrane protein,Tapt1/CMV receptor
Ec32 orthologEc-05_001770.1
COG Functional cat.I
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.1365163-CDS-M-pyrifera_M_contig124664:59..5181622815764.1365163-CDS-M-pyrifera_M_contig124664:59..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124664 60..518 +
1692277558.5180454-CDS-M-pyrifera_M_contig124664:59..5181692277558.5180454-CDS-M-pyrifera_M_contig124664:59..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124664 60..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124664.5018.1prot_M-pyrifera_M_contig124664.5018.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124664 60..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124664.5018.1

>prot_M-pyrifera_M_contig124664.5018.1 ID=prot_M-pyrifera_M_contig124664.5018.1|Name=mRNA_M-pyrifera_M_contig124664.5018.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
GVGGGVGGGRGVSLLGFLWSEWDWGSESSILRPEGDVVTAAETVHDFVHV
PMALEGFVCFGMLASADILLHHVALFPIRVVTSLGSLFLALLPLPRQFRV
ELQRVHLLDVLRGLAAIVSVLLLAQMPMSQVYHWIRGGGATIKLYVMFNI
LDI
back to top

mRNA from alignment at M-pyrifera_M_contig124664:60..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124664.5018.1 ID=mRNA_M-pyrifera_M_contig124664.5018.1|Name=mRNA_M-pyrifera_M_contig124664.5018.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig124664:60..518+ (Macrocystis pyrifera P11B4 male)
GGGGTTGGGGGTGGTGTGGGTGGTGGGAGAGGGGTGTCTTTGTTGGGGTT TTTGTGGTCAGAGTGGGATTGGGGATCGGAGAGTTCGATTTTGAGGCCTG AGGGTGATGTGGTGACAGCGGCAGAAACGGTGCATGATTTCGTCCACGTT CCGATGGCTCTGGAAGGGTTTGTGTGTTTTGGAATGCTTGCAAGCGCTGA CATTCTGTTGCACCACGTGGCACTGTTTCCAATCCGAGTCGTAACTTCCC TGGGTTCTCTCTTCCTCGCCCTCCTCCCCTTGCCTCGGCAATTTCGAGTG GAATTGCAGCGCGTTCATTTGCTCGACGTGCTCCGAGGTCTTGCCGCCAT CGTGTCAGTGCTCCTTCTGGCCCAGATGCCTATGTCGCAAGTGTACCATT GGATTCGTGGCGGTGGGGCCACCATCAAGCTGTACGTGATGTTTAACATC CTGGACATT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig124664:60..518+

>mRNA_M-pyrifera_M_contig124664.5018.1 ID=mRNA_M-pyrifera_M_contig124664.5018.1|Name=mRNA_M-pyrifera_M_contig124664.5018.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig124664:60..518+ (Macrocystis pyrifera P11B4 male)
GGGGTTGGGGGTGGTGTGGGTGGTGGGAGAGGGGTGTCTTTGTTGGGGTT
TTTGTGGTCAGAGTGGGATTGGGGATCGGAGAGTTCGATTTTGAGGCCTG
AGGGTGATGTGGTGACAGCGGCAGAAACGGTGCATGATTTCGTCCACGTT
CCGATGGCTCTGGAAGGGTTTGTGTGTTTTGGAATGCTTGCAAGCGCTGA
CATTCTGTTGCACCACGTGGCACTGTTTCCAATCCGAGTCGTAACTTCCC
TGGGTTCTCTCTTCCTCGCCCTCCTCCCCTTGCCTCGGCAATTTCGAGTG
GAATTGCAGCGCGTTCATTTGCTCGACGTGCTCCGAGGTCTTGCCGCCAT
CGTGTCAGTGCTCCTTCTGGCCCAGATGCCTATGTCGCAAGTGTACCATT
GGATTCGTGGCGGTGGGGCCACCATCAAGCTGTACGTGATGTTTAACATC
CTGGACATTGGGGTTGGGGGTGGTGTGGGTGGTGGGAGAGGGGTGTCTTT
GTTGGGGTTTTTGTGGTCAGAGTGGGATTGGGGATCGGAGAGTTCGATTT
TGAGGCCTGAGGGTGATGTGGTGACAGCGGCAGAAACGGTGCATGATTTC
GTCCACGTTCCGATGGCTCTGGAAGGGTTTGTGTGTTTTGGAATGCTTGC
AAGCGCTGACATTCTGTTGCACCACGTGGCACTGTTTCCAATCCGAGTCG
TAACTTCCCTGGGTTCTCTCTTCCTCGCCCTCCTCCCCTTGCCTCGGCAA
TTTCGAGTGGAATTGCAGCGCGTTCATTTGCTCGACGTGCTCCGAGGTCT
TGCCGCCATCGTGTCAGTGCTCCTTCTGGCCCAGATGCCTATGTCGCAAG
TGTACCATTGGATTCGTGGCGGTGGGGCCACCATCAAGCTGTACGTGATG
TTTAACATCCTGGACATT
back to top