mRNA_M-pyrifera_M_contig12466.5017.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12466.5017.1
Unique NamemRNA_M-pyrifera_M_contig12466.5017.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12466.5017.1 vs. uniprot
Match: D7G7Z6_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z6_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.430e-47
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:  118 VWKRSIPGSDFVAIKSSATLAVSPQALFEVLTPGDIEIVQQYNALVESGRDLEVIDRDNKVSWSATMAVWPCRPRDFVTHIRRAILEDGSVAIV 399
            VWKRS+P SDFVAIKS A+LAVSPQALFEVLTPGDIEIV+QYN LVE G DLEVIDRDNKVSWSATM +WPCRPRDFVTHI+RA LEDGSVAIV
Sbjct:   63 VWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGIDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLEDGSVAIV 156
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BLAST of mRNA_M-pyrifera_M_contig12466.5017.1 vs. uniprot
Match: A0A6H5KXT6_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT6_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.810e-47
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:  118 VWKRSIPGSDFVAIKSSATLAVSPQALFEVLTPGDIEIVQQYNALVESGRDLEVIDRDNKVSWSATMAVWPCRPRDFVTHIRRAILEDGSVAIV 399
            VWKRS+P SDFVAIKS A+LAVSPQALFEVLTPGDIEIV+QYN LVE G DLEVIDRDNKVSWSATM +WPCRPRDFVTHI+RA LEDGSVAIV
Sbjct:   94 VWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGIDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLEDGSVAIV 187
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BLAST of mRNA_M-pyrifera_M_contig12466.5017.1 vs. uniprot
Match: A0A7S4K5H3_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K5H3_GUITH)

HSP 1 Score: 58.2 bits (139), Expect = 8.200e-8
Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:  136 PGSDFVAIKSSATLAVSPQALFEVLTPGDIEIVQQYNALVESGRDLEVIDRDNKVSWSATMAVWPCRPRDFVTHIRRAILEDGSVAI 396
            P + F  + SS  L   P+ ++      D   V +YN   +  +DLE +D + K++WSA+  V P + RDFVT +      DGS+ I
Sbjct:   55 PSAKFFCVMSSGILDAPPEQVYTYFV--DNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTASDGSLII 139
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BLAST of mRNA_M-pyrifera_M_contig12466.5017.1 vs. uniprot
Match: A0A7S4NFJ2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NFJ2_GUITH)

HSP 1 Score: 58.2 bits (139), Expect = 2.130e-7
Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:  136 PGSDFVAIKSSATLAVSPQALFEVLTPGDIEIVQQYNALVESGRDLEVIDRDNKVSWSATMAVWPCRPRDFVTHIRRAILEDGSVAI 396
            P + F  + SS  L   P+ ++      D   V +YN   +  +DLE +D + K++WSA+  V P + RDFVT +      DGS+ I
Sbjct:   55 PSAKFFCVMSSGILDAPPEQVYTYFV--DNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTASDGSLII 139
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BLAST of mRNA_M-pyrifera_M_contig12466.5017.1 vs. uniprot
Match: A0A7S0I3S0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I3S0_9CRYP)

HSP 1 Score: 58.2 bits (139), Expect = 3.110e-7
Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:  136 PGSDFVAIKSSATLAVSPQALFEVLTPGDIEIVQQYNALVESGRDLEVIDRDNKVSWSATMAVWPCRPRDFVTHIRRAILEDGSVAI 396
            P + F  + SS  L   P+ ++      D   V +YN   +  +DLE +D + K++WSA+  V P + RDFVT +      DGS+ I
Sbjct:  414 PSAKFYCVMSSGVLDAPPEQVYTYFV--DNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTAPDGSLII 498
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12466.5017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7Z6_ECTSI1.430e-4787.23START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KXT6_9PHAE1.810e-4787.23START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S4K5H3_GUITH8.200e-833.33Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S4NFJ2_GUITH2.130e-733.33Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S0I3S0_9CRYP3.110e-733.33Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12466contigM-pyrifera_M_contig12466:2569..5007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12466.5017.1prot_M-pyrifera_M_contig12466.5017.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12466 2569..4912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.0751967-CDS-M-pyrifera_M_contig12466:2568..27291622815764.0751967-CDS-M-pyrifera_M_contig12466:2568..2729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12466 2569..2729 -
1692277558.4888039-CDS-M-pyrifera_M_contig12466:2568..27291692277558.4888039-CDS-M-pyrifera_M_contig12466:2568..2729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12466 2569..2729 -
1622815764.086087-CDS-M-pyrifera_M_contig12466:4767..49121622815764.086087-CDS-M-pyrifera_M_contig12466:4767..4912Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12466 4768..4912 -
1692277558.5013814-CDS-M-pyrifera_M_contig12466:4767..49121692277558.5013814-CDS-M-pyrifera_M_contig12466:4767..4912Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12466 4768..4912 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.0963411-UTR-M-pyrifera_M_contig12466:4912..50071622815764.0963411-UTR-M-pyrifera_M_contig12466:4912..5007Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12466 4913..5007 -
1692277558.5095077-UTR-M-pyrifera_M_contig12466:4912..50071692277558.5095077-UTR-M-pyrifera_M_contig12466:4912..5007Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12466 4913..5007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12466.5017.1

>prot_M-pyrifera_M_contig12466.5017.1 ID=prot_M-pyrifera_M_contig12466.5017.1|Name=mRNA_M-pyrifera_M_contig12466.5017.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MSILLSVGVEEIYSWERFCGDQVQRHSRGFATSFVRGLDSRGHRDCSTVQ
RLGREWQRPGSDRQGQQGQLERYNGGMALPAAGFRDAHSTCHSRGRQRGY
R*
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mRNA from alignment at M-pyrifera_M_contig12466:2569..5007-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12466.5017.1 ID=mRNA_M-pyrifera_M_contig12466.5017.1|Name=mRNA_M-pyrifera_M_contig12466.5017.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2439bp|location=Sequence derived from alignment at M-pyrifera_M_contig12466:2569..5007- (Macrocystis pyrifera P11B4 male)
CCTCAATATAGTGCTGCATGCAGGATGTAGTGATACGTACTGTTTGCCGA
TGGTGACATGGCATGGCTTGTGTATACTACTGTTAGTGTCATGTCATGTC
GATACTGCTGTCAGTAGGTGTGGAAGAGATCTATTCCTGGGAGCGATTTT
GTGGCGATCAAGTCCAGCGCCACTCTCGCGGTTTCGCCACAAGCTTTGTT
CGAGGTCTTGACTCCAGGGGACATCGAGATTGTTCAACAGGTGGGTTGGG
GTGCGCAAGGGCAAGAGTCCCTTTATTTTTCTGCGGTGTTTCTCCTTGCT
CACCTTGATCTGAAAAATAACTGACATCTAGAAGCAGTTTTGTCGCTGTT
GCTGCTGTAATTTCTCATATCATACTCCATGACAGCGGTGGCAATTCCGT
TTCGCGAGAAGCCTGAACCTCTACCTCTGGTTATGTTTTATCAAGTATTA
TTGATAGCGGCATTACTATTGGAATACACATAATAATCTGCATACACTTG
CGGTATGGCTGGATGATTGTTTTATTCTGCGGATCGGAACAGGAAGTTTT
GTATTTTTTCCGGCGTGCTTAGAATGAGAGAAATTCCTCCGATTTCCCCT
TGGTAATCGAGTAACAGGTTTGCGAAACAAGACATTTTTGGTTACAGTCC
CGCACGGTGACAGTTCCGCACACGTAAAGTAAACACATATATTTGCCAGG
CACAGACAGCAGCAGTATCGTACAATATGGCATAATTTATCTTACGTAAT
ATATCAGGCAATTTCAGAAGCGAGGTCATCTTGAATAGCAACATAACATG
GTTCCGGCTTGTCCTTTCTGACCCCATCTGTTGCGACCATCGTACCAGGC
AGGAAATCCTCCGATTTGTTTATTTCTACCAGTACATTGTAGAGCTGCAC
CCCGGCCTCTTTGGAACCGGGTATCCGACCGGGTGGGGGTCGGTTGAGGC
GGAATCGGAACCGAGTACCCGGGTGCCGGCAGACACGGGTACCCGGGTAC
CTGGGTTACCATACACTATTTGCGCCCCTTTTAGCGTTTGAGCAGCGACG
GGTAAGGCGGACACGGGTATCAGGTACCCGGGTACCCGGGTTACCATGCA
CTATTTTCTCCCCTTGTAGCTTTTGAGCGGCGGCATGGTACGACGCGTAA
GGCCATAGGTGGGAAAACATGCCTTCTCATTTCGCCGTTCTCGATGAATA
ATGCCAAAGAAAGAAGGAGGCATGTAGGTAAGGGTATTCTGTGTGGGGGA
TCGAGTAGAGAGGTGGGGAGTGGGGTGTTGAAATATAAGCATGGAATGTA
ATTTTCCTTCTACCCTTATTTCGCTCGTCGAATCATCAGGAAGATCCTTC
GAATGTAATTGGTCGCATCAAACAGATCATGTGATCTTGCGACCAAAACC
CACACCCAGAAATAACGAACAAGGAAGTAAGAAATTCGGGGGAAACCTTC
GCCCATACTGATGCAACAAAAAAAGCAACATTAATATATTACATAGAAAA
ATCCCAAAATACAAGAACCCAGACCGATATCCGTCCAACCATCTATCCGA
TCAAACATCCAATCAATACTCGTATATCAACCCCGTGCGGAAACCATTAA
TAATAGTGTTCGATTTCTCATTGCCGCAATCACATGAGTTAGTTTCTCTG
CGAACAGCAACAAACATCGAATGGCTTGGACTTCTTGTGACTGGTCTATC
TCCTGGTGCATGGTAAAGTAGGGCCGCTTACGCTGGCATGGATATCGTCT
GTGTAGCGTAGGGGTATTCTCTATCTCGATCTGTAGTCTGCAGGGGCGAG
AGGAAAGAGTCTACTGTAGGTGCACAGCCGCTGCAGTGTAAGTAAAAATC
AACGTACACCCTAGTCTTGGGGCCTCCGTACCGTATAGAGCAATTGACGG
GTACCCGGGTACGCGGGGTACAAATACCCACGATTCCGTGAGTTGGACCG
GGACGGTTCCGGTTCCGACGGTTCGGGGTACGCGCCACCGGGTACCCGGT
TCTCAGTTAGACGGGGCGCAACTCTAGTCTGCAGTCCAGTATGAGCCAGG
GGTCTCTAGGACTGTGCTGGGGCGTTTGTTTTTTTTTCGCGGCTTTCATT
AGCGAGTACCAGTATGGTCTAGGGGCAACCCGTCTGTGATTACTACTACT
ACTACTACTGGGTGTACTATGAACACTATATACTGCGATATTCAAATTAC
TACCAGTACACTGGTACGTATTGTAAACTTAGACTGCCCATTGTGACGCC
AACATTTTGTGTCCCCAACAACTGTCAGTACAACGCCTTGGTCGAGAGTG
GCAGAGACCTGGAAGTGATCGACAGGGACAACAAGGTCAGCTGGAGCGCT
ACAATGGCGGTATGGCCTTGCCGGCCGCGGGATTTCGTGACGCACATTCG
ACGTGCCATTCTAGAGGACGGCAGCGTGGCTATCGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12466:2569..5007-

>mRNA_M-pyrifera_M_contig12466.5017.1 ID=mRNA_M-pyrifera_M_contig12466.5017.1|Name=mRNA_M-pyrifera_M_contig12466.5017.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig12466:2569..5007- (Macrocystis pyrifera P11B4 male)
ATGTCGATACTGCTGTCAGTAGGTGTGGAAGAGATCTATTCCTGGGAGCG
ATTTTGTGGCGATCAAGTCCAGCGCCACTCTCGCGGTTTCGCCACAAGCT
TTGTTCGAGGTCTTGACTCCAGGGGACATCGAGATTGTTCAACAGATGTC
GATACTGCTGTCAGTAGGTGTGGAAGAGATCTATTCCTGGGAGCGATTTT
GTGGCGATCAAGTCCAGCGCCACTCTCGCGGTTTCGCCACAAGCTTTGTT
CGAGGTCTTGACTCCAGGGGACATCGAGATTGTTCAACAGTACAACGCCT
TGGTCGAGAGTGGCAGAGACCTGGAAGTGATCGACAGGGACAACAAGGTC
AGCTGGAGCGCTACAATGGCGGTATGGCCTTGCCGGCCGCGGGATTTCGT
GACGCACATTCGACGTGCCATTCTAGAGGACGGCAGCGTGGCTATCGTTA
ATACAACGCCTTGGTCGAGAGTGGCAGAGACCTGGAAGTGATCGACAGGG
ACAACAAGGTCAGCTGGAGCGCTACAATGGCGGTATGGCCTTGCCGGCCG
CGGGATTTCGTGACGCACATTCGACGTGCCATTCTAGAGGACGGCAGCGT
GGCTATCGTTAA
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