mRNA_M-pyrifera_M_contig124654.5015.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124654.5015.1
Unique NamemRNA_M-pyrifera_M_contig124654.5015.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: A0A5A8EL68_CAFRO (Hypothetical protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EL68_CAFRO)

HSP 1 Score: 147 bits (372), Expect = 3.620e-39
Identity = 73/125 (58.40%), Postives = 91/125 (72.80%), Query Frame = 1
Query:   64 GQRERGEGWVSDFMSKKQRHMEGERGEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            G R  G    S   ++ + H+ G  G+ RFLELE+R LADV LVGFPNAGKSSLL +LSKA+PK+ASY FTTL P +GT  + DG  LR AD+PG++ GA A+RGLG EFLRH++RT V+  VVD
Sbjct:  219 GNRHMGREQASSEETRARSHIAGSPGQTRFLELELRALADVGLVGFPNAGKSSLLRILSKARPKVASYAFTTLQPVIGTARFDDGAALRIADIPGLISGAHANRGLGHEFLRHVQRTSVLVYVVD 343          
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: A0A7S1YYZ6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YYZ6_TRICV)

HSP 1 Score: 141 bits (355), Expect = 3.190e-38
Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    1 GGIGGLGNVVLESIARKEVERGQRERGEGWVSDFMSKKQRHMEGERGEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            GG GG GN +          +GQ      ++ D   K      G+ GE  FLELE++L+ADV LVGFPNAGKSSLL+ +S A+P+IASYPFTTLHP +GT+ Y DG R+  AD+PG++ GAS  RG G +FLRH++RTK +  +VD
Sbjct:  131 GGRGGSGNQIFA--------KGQ------FIDDVELKAATSSRGKPGEKAFLELELKLIADVGLVGFPNAGKSSLLAAVSMAKPEIASYPFTTLHPLVGTVEYRDGRRIVMADVPGLIDGASEGRGRGHDFLRHLERTKALVYIVD 262          
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: B7FYH3_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH3_PHATC)

HSP 1 Score: 140 bits (353), Expect = 2.680e-37
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1
Query:  133 ERGEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            E GE+ FLELE++L+AD+ LVGFPNAGKSSLL  +S+A P+IA YPFTTLHP +G + Y DG R+RAAD+PG++ GAS  RG G  FLRHI+RTK +  +VD
Sbjct:  241 EPGEIAFLELELKLIADIGLVGFPNAGKSSLLHAMSRASPEIAPYPFTTLHPLIGCIEYQDGYRIRAADIPGLIEGASEGRGCGHAFLRHIERTKALLYIVD 342          
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: A0A7S2M138_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M138_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.280e-37
Identity = 65/102 (63.73%), Postives = 84/102 (82.35%), Query Frame = 1
Query:  133 ERGEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            + GE+ +LELE++L+ADV LVGFPNAGKSSLLS +S+A+PKIASYPFTTL P  GT+HY DG ++  AD+PG++ GAS  RG G+EFLRHI+RTK +  +VD
Sbjct:  246 DEGEITYLELELKLIADVGLVGFPNAGKSSLLSAMSRAKPKIASYPFTTLEPLRGTVHYNDGHQIIMADVPGLIDGASEGRGRGMEFLRHIERTKALIYMVD 347          
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: A0A1Z5K6W4_FISSO (GTPase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6W4_FISSO)

HSP 1 Score: 140 bits (352), Expect = 1.350e-36
Identity = 62/100 (62.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:  139 GEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            GE+ FLELE++L+AD+ LVGFPNAGKSSLL  +S+A P++A YPFTTLHP LG++ Y DG R+R AD+PG++ GAS  RG G +FLRHI+RTK +  +VD
Sbjct:  273 GEIAFLELELKLIADIGLVGFPNAGKSSLLRAMSRATPEVAPYPFTTLHPILGSVDYRDGVRIRVADIPGLIDGASEGRGKGFDFLRHIERTKALLYIVD 372          
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: A0A196SQY3_BLAHN (GTPase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SQY3_BLAHN)

HSP 1 Score: 137 bits (346), Expect = 1.640e-36
Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = 1
Query:    1 GGIGGLGNVV-LESIARKEVERGQRERGEGWVSDFMSKKQRHMEGERGEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            GGIGG GN    E   R+ +      R     + +    + H  GE GE   L ++M+ LA+V LVG+PNAGKS+LLS L+K  PKIASYPFTTL P +G ++Y+DG+ +  AD+PGI+ GA  +RGLGL FLRHI+RTKV+  V+D
Sbjct:  139 GGIGGQGNHEWYEQSKRRNLRNWGSNRDRRLQATYYKHDENHNAGEEGEDVTLLVQMQQLAEVGLVGYPNAGKSTLLSKLTKTVPKIASYPFTTLRPLVGYVNYSDGSHVSVADIPGIISGAHENRGLGLSFLRHIQRTKVLTYVID 285          
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: A0A7S3M2T8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2T8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 5.370e-36
Identity = 72/146 (49.32%), Postives = 100/146 (68.49%), Query Frame = 1
Query:    1 GGIGGLGNVVLESIARKEVERGQRERGEGWVSDFMSKKQRHMEGERGEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            GG  G+GN ++   ++   E G      G      S  + ++ G+ GE R L LE++++ADV LVGFPNAGKSSLL  LS A PK+ASY FTTLHP++G + Y+D +R+  AD+PG+V GA+ +RGLG +FLRHI+RTK++  VVD
Sbjct:  221 GGAAGIGNKMMMK-SKNGSEAG------GTNQQLQSMPKTYIPGQHGESRSLVLELKIIADVGLVGFPNAGKSSLLRALSNAVPKVASYRFTTLHPSVGVVEYSDHSRITVADIPGLVEGAADNRGLGHDFLRHIERTKLLLYVVD 359          
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: A0A836TEJ0_9AQUI (Obg family GTPase CgtA n=1 Tax=Hydrogenothermaceae bacterium TaxID=2528249 RepID=A0A836TEJ0_9AQUI)

HSP 1 Score: 134 bits (336), Expect = 5.400e-36
Identity = 70/146 (47.95%), Postives = 93/146 (63.70%), Query Frame = 1
Query:    1 GGIGGLGNVVLESIARKEVERGQRERGEGWVSDFMSKKQRHMEGERGEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            GG GG GN + +S   +  +  +                   EGE+GE +++ELE++L+ADV ++GFPNAGKS+L+SVLS A+PKIA YPFTTL P LG L    G  L  AD+PG++ GAS   GLG EFLRHI+RTK +  V+D
Sbjct:   53 GGKGGKGNAMFKSSTNQAPDYAE-------------------EGEKGEEKWIELELKLIADVGIIGFPNAGKSTLISVLSHARPKIADYPFTTLSPVLGVLQLDIGKSLVLADIPGLIEGASRGAGLGHEFLRHIERTKFLLHVID 179          
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: A0A4R7I0N3_9ACTN (GTPase Obg n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A4R7I0N3_9ACTN)

HSP 1 Score: 137 bits (345), Expect = 5.440e-36
Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    1 GGIGGLGNVVLESIARKEVERGQRERGEGWVSDFMSKKQRHMEGERGEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            GG GG GN    S  R+E    +                   +GE GE R+L+LE++L+ADVALVGFPNAGKS+L+SV+S A+PKIA+YPFTTL P LG +   D T    AD+PG++ GAS  RGLG +FLRHI+R +V+ L++D
Sbjct:  121 GGRGGRGNAKFLSNFRREPTFAE-------------------QGEHGEERWLKLEIQLMADVALVGFPNAGKSTLISVISAAKPKIANYPFTTLEPNLGVVSLDDDTNFVVADIPGLIEGASEGRGLGFQFLRHIERARVLCLLID 247          
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Match: A0A3M0WH65_9BACT (Obg family GTPase CgtA (Fragment) n=1 Tax=Aquificae bacterium TaxID=2202151 RepID=A0A3M0WH65_9BACT)

HSP 1 Score: 133 bits (334), Expect = 5.890e-36
Identity = 69/146 (47.26%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    1 GGIGGLGNVVLESIARKEVERGQRERGEGWVSDFMSKKQRHMEGERGEVRFLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGTLHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD 438
            GG GG GN + +S   +  +  +                   EGE+GE +++ELE++L+AD  ++GFPNAGKS+L+SVLS A+PKIA YPFTTL P LG L    G  L  AD+PG++ GAS   GLG EFLRHI+RTK +  V+D
Sbjct:   25 GGKGGKGNAMFKSATNQAPDYAE-------------------EGEKGEEKWIELELKLIADAGIIGFPNAGKSTLISVLSHAKPKIADYPFTTLSPVLGVLQLDYGKSLILADIPGLIEGASEGAGLGHEFLRHIERTKFLVHVID 151          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124654.5015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EL68_CAFRO3.620e-3958.40Hypothetical protein n=2 Tax=Cafeteria roenbergens... [more]
A0A7S1YYZ6_TRICV3.190e-3850.68Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B7FYH3_PHATC2.680e-3762.75Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S2M138_9STRA6.280e-3763.73Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1Z5K6W4_FISSO1.350e-3662.00GTPase n=2 Tax=Fistulifera solaris TaxID=1519565 R... [more]
A0A196SQY3_BLAHN1.640e-3649.66GTPase n=1 Tax=Blastocystis sp. subtype 1 (strain ... [more]
A0A7S3M2T8_9STRA5.370e-3649.32Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A836TEJ0_9AQUI5.400e-3647.95Obg family GTPase CgtA n=1 Tax=Hydrogenothermaceae... [more]
A0A4R7I0N3_9ACTN5.440e-3649.32GTPase Obg n=2 Tax=Acidimicrobiales TaxID=84993 Re... [more]
A0A3M0WH65_9BACT5.890e-3647.26Obg family GTPase CgtA (Fragment) n=1 Tax=Aquifica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124654contigM-pyrifera_M_contig124654:5..442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue3.4e-31
Seed eggNOG ortholog2850.Phatr20124
Preferred nameMTG2
KEGG koko:K03979,ko:K10277,ko:K15334
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000313,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043576,GO:0043603,GO:0043604,GO:0044057,GO:0044065,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0070129,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:0098798,GO:0140053,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.GTP1/OBG
EggNOG OGs2XFX5@2836,COG0536@1,KOG1489@2759
Ec32 ortholog descriptionMtg2, mitochondrial Obg/CtgA-like GTPase
Ec32 orthologEc-20_000780.1
EC1.14.11.27,2.1.1.202
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016,ko03036
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.9889207-CDS-M-pyrifera_M_contig124654:4..4421622815763.9889207-CDS-M-pyrifera_M_contig124654:4..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124654 5..442 +
1692277558.4513905-CDS-M-pyrifera_M_contig124654:4..4421692277558.4513905-CDS-M-pyrifera_M_contig124654:4..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124654 5..442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124654.5015.1prot_M-pyrifera_M_contig124654.5015.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124654 5..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124654.5015.1

>prot_M-pyrifera_M_contig124654.5015.1 ID=prot_M-pyrifera_M_contig124654.5015.1|Name=mRNA_M-pyrifera_M_contig124654.5015.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
GGIGGLGNVVLESIARKEVERGQRERGEGWVSDFMSKKQRHMEGERGEVR
FLELEMRLLADVALVGFPNAGKSSLLSVLSKAQPKIASYPFTTLHPTLGT
LHYADGTRLRAADMPGIVRGASADRGLGLEFLRHIKRTKVIALVVD
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mRNA from alignment at M-pyrifera_M_contig124654:5..442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124654.5015.1 ID=mRNA_M-pyrifera_M_contig124654.5015.1|Name=mRNA_M-pyrifera_M_contig124654.5015.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig124654:5..442+ (Macrocystis pyrifera P11B4 male)
GGAGGCATTGGGGGTTTGGGGAATGTGGTGTTGGAGAGTATCGCTCGCAA GGAGGTGGAGCGGGGGCAGCGGGAGCGTGGGGAAGGGTGGGTTTCCGATT TCATGTCCAAAAAACAGCGCCACATGGAAGGAGAGCGGGGCGAAGTGCGA TTTCTGGAACTCGAAATGCGGCTCTTGGCCGACGTGGCCCTGGTGGGGTT TCCAAACGCCGGGAAAAGCTCTTTACTGTCGGTGCTTTCCAAAGCCCAGC CGAAAATCGCGTCCTACCCCTTCACCACCCTCCACCCCACCCTCGGCACG CTCCACTACGCAGACGGCACGCGGCTGCGCGCCGCAGACATGCCCGGGAT CGTCAGGGGCGCCAGCGCAGACCGCGGGCTCGGCCTTGAGTTCCTCCGAC ACATCAAACGCACCAAAGTCATCGCCCTTGTCGTCGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124654:5..442+

>mRNA_M-pyrifera_M_contig124654.5015.1 ID=mRNA_M-pyrifera_M_contig124654.5015.1|Name=mRNA_M-pyrifera_M_contig124654.5015.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig124654:5..442+ (Macrocystis pyrifera P11B4 male)
GGAGGCATTGGGGGTTTGGGGAATGTGGTGTTGGAGAGTATCGCTCGCAA
GGAGGTGGAGCGGGGGCAGCGGGAGCGTGGGGAAGGGTGGGTTTCCGATT
TCATGTCCAAAAAACAGCGCCACATGGAAGGAGAGCGGGGCGAAGTGCGA
TTTCTGGAACTCGAAATGCGGCTCTTGGCCGACGTGGCCCTGGTGGGGTT
TCCAAACGCCGGGAAAAGCTCTTTACTGTCGGTGCTTTCCAAAGCCCAGC
CGAAAATCGCGTCCTACCCCTTCACCACCCTCCACCCCACCCTCGGCACG
CTCCACTACGCAGACGGCACGCGGCTGCGCGCCGCAGACATGCCCGGGAT
CGTCAGGGGCGCCAGCGCAGACCGCGGGCTCGGCCTTGAGTTCCTCCGAC
ACATCAAACGCACCAAAGTCATCGCCCTTGTCGTCGATGGAGGCATTGGG
GGTTTGGGGAATGTGGTGTTGGAGAGTATCGCTCGCAAGGAGGTGGAGCG
GGGGCAGCGGGAGCGTGGGGAAGGGTGGGTTTCCGATTTCATGTCCAAAA
AACAGCGCCACATGGAAGGAGAGCGGGGCGAAGTGCGATTTCTGGAACTC
GAAATGCGGCTCTTGGCCGACGTGGCCCTGGTGGGGTTTCCAAACGCCGG
GAAAAGCTCTTTACTGTCGGTGCTTTCCAAAGCCCAGCCGAAAATCGCGT
CCTACCCCTTCACCACCCTCCACCCCACCCTCGGCACGCTCCACTACGCA
GACGGCACGCGGCTGCGCGCCGCAGACATGCCCGGGATCGTCAGGGGCGC
CAGCGCAGACCGCGGGCTCGGCCTTGAGTTCCTCCGACACATCAAACGCA
CCAAAGTCATCGCCCTTGTCGTCGAT
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