mRNA_M-pyrifera_M_contig124653.5014.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124653.5014.1
Unique NamemRNA_M-pyrifera_M_contig124653.5014.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: D8M6H9_BLAHO (CTP_transf_like domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M6H9_BLAHO)

HSP 1 Score: 75.5 bits (184), Expect = 9.290e-15
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 SPSLTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHVISTTRESPAPASSTFVRKWI 222
            SP L +DIS + D +GPS+V  +++AIVVS ET PGA  +N+ R EKG++PL +++  R S  P SS+F+R+++
Sbjct:   66 SPHLEVDISPLTDIYGPSVVKPDLEAIVVSLETLPGAKLINRVREEKGMRPLKILTVNRGSKYPLSSSFIRQYL 139          
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: A0A1D3L3H4_9EURY (Phosphopantetheine adenylyltransferase n=1 Tax=Methanobacterium congolense TaxID=118062 RepID=A0A1D3L3H4_9EURY)

HSP 1 Score: 70.5 bits (171), Expect = 1.960e-13
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   10 LTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHVIS---TTRESPAPASSTFVRKWIRDHDG 237
            L  DI E++DP+G +I DEE+ AIVVS ETEP A+ +N+ R EKG+K L +++      E   P SST +RK   D +G
Sbjct:   71 LNYDIKELNDPYGTTIHDEEVDAIVVSEETEPTALEINRIRREKGMKALDILTIGMVLAEDGRPISSTRIRKGEIDREG 149          
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: M1B9A2_SOLTU (Syntaxin n=6 Tax=Solanum TaxID=4107 RepID=M1B9A2_SOLTU)

HSP 1 Score: 70.9 bits (172), Expect = 2.050e-13
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    4 PSLTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHV----ISTTRESPAPASSTFVRKW----IRDHDGEKR 246
            P L +++  I DP+GPSIVDE ++AIVVS ET PG ++VN++R EKGL  L +    + +   S    SST +RK     +RDH+ E +
Sbjct:   85 PELIVEVEPIVDPYGPSIVDENLEAIVVSKETFPGGLSVNRRRAEKGLSQLQIEVVDLVSEESSGDKLSSTALRKLEAEKLRDHNPESQ 173          
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: A0A2I0K0B5_PUNGR (phosphopantetheine adenylyltransferase-like isoform X2 n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K0B5_PUNGR)

HSP 1 Score: 70.9 bits (172), Expect = 2.220e-13
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    4 PSLTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHVISTTRESPAPASSTFVRKWIRDHDGEKR 246
            P L + +  I DP+GPSIVDE+++AIVVS ET PG ++VNKKR E+GL  L +      S   + +      +R H+ EK+
Sbjct:   88 PELVVQVEPIMDPYGPSIVDEKLEAIVVSKETVPGGMSVNKKRAERGLSQLKIEVVDLLSEGSSGNKLSSSTLRRHEVEKK 168          
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: UPI000901FC95 (phosphopantetheine adenylyltransferase isoform X1 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000901FC95)

HSP 1 Score: 69.7 bits (169), Expect = 6.940e-13
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   10 LTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHVISTTRE---------SPAPASSTFVRKWIRDHDGEKRE 249
            L + +  I DP+GPSIVD+ ++AIVVS ET PG ++VN+KR EKGL  L V+S+  E         S    SSTF+RK   +  G ++E
Sbjct:   95 LIIQVEPIIDPYGPSIVDDTLEAIVVSKETFPGGLSVNRKRAEKGLSELKVLSSIIEVVDLVSEETSGDKLSSTFLRKIEAEKLGNQQE 183          
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: UPI0009E39CA4 (phosphopantetheine adenylyltransferase n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E39CA4)

HSP 1 Score: 69.7 bits (169), Expect = 7.460e-13
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    4 PSLTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHV 162
            P LT+++  I DPFGPSIVDEE++AIVVS ET PG +AVN++R E+GL  L +
Sbjct:   89 PELTVEVEPITDPFGPSIVDEELEAIVVSKETLPGGLAVNRRRAERGLSQLKI 141          
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: A0A7N0ZZR5_KALFE (CTP_transf_like domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0ZZR5_KALFE)

HSP 1 Score: 69.3 bits (168), Expect = 8.250e-13
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    4 PSLTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHV----ISTTRESPAPASSTFVRKWIRD-HDGE 240
            P L ++I  I DP+GPSIVD +++AI+VS ET PG ++VNKKR E+GL  L +    +     S A  SST +RK   D H+ E
Sbjct:   88 PELNVEIEPITDPYGPSIVDADLEAIIVSKETLPGGLSVNKKRAERGLSHLKIEAVDLVPEESSGAKLSSTALRKIEHDKHNSE 171          
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: UPI001FF2D9F8 (phosphopantetheine adenylyltransferase n=1 Tax=Methanonatronarchaeum sp. AMET6-2 TaxID=2933293 RepID=UPI001FF2D9F8)

HSP 1 Score: 68.6 bits (166), Expect = 1.050e-12
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   22 ISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHVISTTRESPA---PASSTFVRKWIRDHDG 237
            I++I DP G S+  ++I AIVVS ET+PGA  +NKKR EKGLKPL VI+   E      P SST +R+ I D DG
Sbjct:   72 ITKIKDPVGASL-QKDIDAIVVSQETKPGANKINKKRHEKGLKPLTVITVRMEEAEDGEPISSTRIRRGIIDKDG 145          
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: A0A0V0GWK5_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GWK5_SOLCH)

HSP 1 Score: 67.8 bits (164), Expect = 1.260e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    4 PSLTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHV----ISTTRESPAPASSTFVRK 216
            P L +++  I DP+GPSIVDE ++AIVVS ET PG ++VN+KR EKGL  L +    + +   S    SST +RK
Sbjct:   11 PELIVEVEPIVDPYGPSIVDENLEAIVVSKETLPGGLSVNRKRAEKGLSQLKIEVVDLVSEESSGDKLSSTALRK 85          
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Match: A0A3Q7FJM3_SOLLC (CTP_transf_like domain-containing protein n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7FJM3_SOLLC)

HSP 1 Score: 68.9 bits (167), Expect = 1.530e-12
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    4 PSLTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLKPLHV----ISTTRESPAPASSTFVRKW-----IRDHD 234
            P L +++  I DP+GPSIVDE ++AIVVS ET PG ++VN++R EKGL  L +    + +   S    SST +RK      +RDH+
Sbjct:  100 PELIVEVEPIVDPYGPSIVDENLEAIVVSKETLPGGLSVNRRRAEKGLSQLKIEVVDLVSEESSGDKLSSTALRKLEAEKLLRDHN 185          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124653.5014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8M6H9_BLAHO9.290e-1547.30CTP_transf_like domain-containing protein n=1 Tax=... [more]
A0A1D3L3H4_9EURY1.960e-1346.84Phosphopantetheine adenylyltransferase n=1 Tax=Met... [more]
M1B9A2_SOLTU2.050e-1343.82Syntaxin n=6 Tax=Solanum TaxID=4107 RepID=M1B9A2_S... [more]
A0A2I0K0B5_PUNGR2.220e-1343.21phosphopantetheine adenylyltransferase-like isofor... [more]
UPI000901FC956.940e-1344.94phosphopantetheine adenylyltransferase isoform X1 ... [more]
UPI0009E39CA47.460e-1360.38phosphopantetheine adenylyltransferase n=1 Tax=Pha... [more]
A0A7N0ZZR5_KALFE8.250e-1346.43CTP_transf_like domain-containing protein n=1 Tax=... [more]
UPI001FF2D9F81.050e-1253.33phosphopantetheine adenylyltransferase n=1 Tax=Met... [more]
A0A0V0GWK5_SOLCH1.260e-1248.00Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A3Q7FJM3_SOLLC1.530e-1244.19CTP_transf_like domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124653contigM-pyrifera_M_contig124653:249..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.8
Seed ortholog evalue8.7e-11
Seed eggNOG ortholog4113.PGSC0003DMT400040090
KEGG rclassRC00002
KEGG koko:K02201
KEGG ReactionR03035
KEGG Pathwayko00770,ko01100,map00770,map01100
KEGG ModuleM00120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004595,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006629,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009628,GO:0009651,GO:0009889,GO:0009987,GO:0010876,GO:0015936,GO:0015937,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019915,GO:0030808,GO:0031323,GO:0031326,GO:0033036,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051179,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0051235,GO:0055086,GO:0062012,GO:0065007,GO:0065008,GO:0070566,GO:0071704,GO:0072521,GO:0072522,GO:0080020,GO:0080090,GO:0090407,GO:1900371,GO:1900542,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Cytidylyltransferase-like
EggNOG OGs37U57@33090,3GI2C@35493,44J91@71274,COG1019@1,KOG3351@2759
EC2.7.7.3
COG Functional cat.S
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.9504051-CDS-M-pyrifera_M_contig124653:248..5001622815763.9504051-CDS-M-pyrifera_M_contig124653:248..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124653 249..500 -
1692277558.4381428-CDS-M-pyrifera_M_contig124653:248..5001692277558.4381428-CDS-M-pyrifera_M_contig124653:248..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124653 249..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124653.5014.1prot_M-pyrifera_M_contig124653.5014.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124653 249..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124653.5014.1

>prot_M-pyrifera_M_contig124653.5014.1 ID=prot_M-pyrifera_M_contig124653.5014.1|Name=mRNA_M-pyrifera_M_contig124653.5014.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
SPSLTLDISEIHDPFGPSIVDEEIQAIVVSSETEPGAIAVNKKRIEKGLK
PLHVISTTRESPAPASSTFVRKWIRDHDGEKRE*
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mRNA from alignment at M-pyrifera_M_contig124653:249..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124653.5014.1 ID=mRNA_M-pyrifera_M_contig124653.5014.1|Name=mRNA_M-pyrifera_M_contig124653.5014.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig124653:249..500- (Macrocystis pyrifera P11B4 male)
TCTCCTTCACTCACTCTTGACATTTCAGAAATCCATGACCCATTTGGACC ATCTATTGTAGATGAAGAGATCCAAGCTATTGTCGTTTCCTCAGAAACAG AGCCAGGTGCAATTGCAGTGAACAAGAAAAGGATCGAAAAGGGGTTAAAA CCACTTCATGTCATCTCCACAACGAGAGAATCACCAGCACCAGCCTCATC AACATTTGTACGAAAGTGGATCAGAGACCACGATGGTGAAAAGAGAGAAT AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124653:249..500-

>mRNA_M-pyrifera_M_contig124653.5014.1 ID=mRNA_M-pyrifera_M_contig124653.5014.1|Name=mRNA_M-pyrifera_M_contig124653.5014.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig124653:249..500- (Macrocystis pyrifera P11B4 male)
TCTCCTTCACTCACTCTTGACATTTCAGAAATCCATGACCCATTTGGACC
ATCTATTGTAGATGAAGAGATCCAAGCTATTGTCGTTTCCTCAGAAACAG
AGCCAGGTGCAATTGCAGTGAACAAGAAAAGGATCGAAAAGGGGTTAAAA
CCACTTCATGTCATCTCCACAACGAGAGAATCACCAGCACCAGCCTCATC
AACATTTGTACGAAAGTGGATCAGAGACCACGATGGTGAAAAGAGAGAAT
AATCTCCTTCACTCACTCTTGACATTTCAGAAATCCATGACCCATTTGGA
CCATCTATTGTAGATGAAGAGATCCAAGCTATTGTCGTTTCCTCAGAAAC
AGAGCCAGGTGCAATTGCAGTGAACAAGAAAAGGATCGAAAAGGGGTTAA
AACCACTTCATGTCATCTCCACAACGAGAGAATCACCAGCACCAGCCTCA
TCAACATTTGTACGAAAGTGGATCAGAGACCACGATGGTGAAAAGAGAGA
ATAA
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