mRNA_M-pyrifera_M_contig124630.5007.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124630.5007.1
Unique NamemRNA_M-pyrifera_M_contig124630.5007.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: UPI001FA84E9E (pyridoxal-phosphate dependent enzyme n=1 Tax=Clostridium botulinum TaxID=1491 RepID=UPI001FA84E9E)

HSP 1 Score: 149 bits (375), Expect = 1.220e-44
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    7 DGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKG--CVIV 267
            +GFI  +GNTPL+RLN +SE TGC +LGKAEF+NPGGSVKDRAALF++EDAER GKLRPGGTVVEGTAGNTGIGLAH+C AKG  C+IV
Sbjct:   24 NGFIDTIGNTPLIRLNSLSEATGCNILGKAEFLNPGGSVKDRAALFIIEDAERQGKLRPGGTVVEGTAGNTGIGLAHICNAKGYRCLIV 112
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BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: A0A0D0T091_9TREE (Unplaced genomic scaffold supercont1.13, whole genome shotgun sequence n=1 Tax=Cryptococcus gattii VGII Ram5 TaxID=1296110 RepID=A0A0D0T091_9TREE)

HSP 1 Score: 149 bits (377), Expect = 2.420e-44
Identity = 70/89 (78.65%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    4 VDGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKG--CVI 264
            V+GF+GA+GNTPL+RLNR+SEETGC +L KAEFM+PGGS+KDRAAL+LV+DAE  G +RPGGTVVEGTAGNTGIGLAHVCR+KG  CVI
Sbjct:   34 VNGFVGAIGNTPLIRLNRLSEETGCNILAKAEFMSPGGSIKDRAALYLVQDAEEKGLIRPGGTVVEGTAGNTGIGLAHVCRSKGYNCVI 122
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BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: M5BSC4_THACB (Cysteine synthase A n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BSC4_THACB)

HSP 1 Score: 150 bits (379), Expect = 3.930e-44
Identity = 70/89 (78.65%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    4 VDGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKG--CVI 264
            V GF+GA+GNTPL+RLN++SEETGC VLGKAEF NPGGSVKDRAAL++++DAE +G+L+PGGTVVEGTAGNTGIGLAHVCR+KG  CVI
Sbjct:   20 VHGFVGAIGNTPLIRLNKLSEETGCEVLGKAEFQNPGGSVKDRAALYVIKDAEESGRLKPGGTVVEGTAGNTGIGLAHVCRSKGYKCVI 108
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BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: K9SA83_9CYAN (Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9SA83_9CYAN)

HSP 1 Score: 150 bits (380), Expect = 6.330e-43
Identity = 69/89 (77.53%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    7 DGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKG--CVIV 267
            DGF+GAVGNTPL+RL+ VSEETGC +LGKAEF+NPGGSVKDRAAL+++EDAE+ G+L+PGGTVVEGTAGNTGIGLAH+C AKG  C+I+
Sbjct:    5 DGFVGAVGNTPLIRLDSVSEETGCEILGKAEFLNPGGSVKDRAALYIIEDAEKRGELKPGGTVVEGTAGNTGIGLAHICNAKGYKCLII 93
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BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: A0A8H3FQT4_9LECA (Cysteine synthase 1 n=1 Tax=Gomphillus americanus TaxID=1940652 RepID=A0A8H3FQT4_9LECA)

HSP 1 Score: 151 bits (382), Expect = 9.050e-43
Identity = 70/89 (78.65%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 AVDGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKGCVIV 267
            +V+GF+GA+GNTPL+RLN++SEETGC VLGKAEF NPGGSVKDRAALF+V+DAE  G L+PGGTVVEGTAGNTGIGLAHVCR+KG  +V
Sbjct:   37 SVNGFVGAIGNTPLIRLNKISEETGCNVLGKAEFQNPGGSVKDRAALFVVQDAEERGLLKPGGTVVEGTAGNTGIGLAHVCRSKGYKLV 125
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BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: A0A6H0Y6K3_9PEZI (PALP domain-containing protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A6H0Y6K3_9PEZI)

HSP 1 Score: 150 bits (380), Expect = 1.120e-42
Identity = 72/89 (80.90%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 AVDGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKGCVIV 267
            A DGF+ A+GNTPL+RL R+SEETGC VLGKAEF NPGGSVKDRAALF+VEDAE+ G LRPGGTVVEGTAGNTGIGLAHVCR+KG  +V
Sbjct:   15 AKDGFVSAIGNTPLIRLKRLSEETGCEVLGKAEFQNPGGSVKDRAALFVVEDAEKRGLLRPGGTVVEGTAGNTGIGLAHVCRSKGYKLV 103
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BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: A0A8H2Y594_9AGAM (Hypothetical protein n=6 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H2Y594_9AGAM)

HSP 1 Score: 150 bits (379), Expect = 1.320e-42
Identity = 70/89 (78.65%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    4 VDGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKG--CVI 264
            V GF+GA+GNTPL+RLN++SEETGC VLGKAEF NPGGSVKDRAAL++++DAE +G+L+PGGTVVEGTAGNTGIGLAHVCR+KG  CVI
Sbjct:   20 VHGFVGAIGNTPLIRLNKLSEETGCEVLGKAEFQNPGGSVKDRAALYVIKDAEESGRLKPGGTVVEGTAGNTGIGLAHVCRSKGYNCVI 108
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BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: A0A0H2TXB4_MAGP6 (PALP domain-containing protein (Fragment) n=1 Tax=Magnaporthiopsis poae (strain ATCC 64411 / 73-15) TaxID=644358 RepID=A0A0H2TXB4_MAGP6)

HSP 1 Score: 145 bits (366), Expect = 1.360e-42
Identity = 68/86 (79.07%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:   10 GFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKGCVIV 267
            G  GA+GNTPL+RLNR+SEETGC +LGKAEFMNPGGSVKDRAAL++V+DAE  G LRPGGTVVEGTAGNTGIGLAHVCR++G  +V
Sbjct:   41 GLTGAIGNTPLIRLNRLSEETGCEILGKAEFMNPGGSVKDRAALYVVKDAEERGLLRPGGTVVEGTAGNTGIGLAHVCRSRGYKLV 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: A0A8H8SKC8_9AGAM (Cysteine synthase n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SKC8_9AGAM)

HSP 1 Score: 150 bits (378), Expect = 1.520e-42
Identity = 69/89 (77.53%), Postives = 84/89 (94.38%), Query Frame = 1 
Query:    4 VDGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKG--CVI 264
            V+GF+GA+GNTPL+RLN++SEETGC +LGK+EF NPGGSVKDRAAL++V+DAE +G+L+PGGTVVEGTAGNTGIGLAHVCR+KG  CVI
Sbjct:   21 VNGFVGAIGNTPLIRLNKLSEETGCDILGKSEFQNPGGSVKDRAALYVVKDAEESGRLKPGGTVVEGTAGNTGIGLAHVCRSKGYKCVI 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Match: A0A0B7FVZ6_THACB (Cysteine synthase A n=11 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0B7FVZ6_THACB)

HSP 1 Score: 150 bits (379), Expect = 1.840e-42
Identity = 70/89 (78.65%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    4 VDGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLVEDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKG--CVI 264
            V GF+GA+GNTPL+RLN++SEETGC VLGKAEF NPGGSVKDRAAL++++DAE +G+L+PGGTVVEGTAGNTGIGLAHVCR+KG  CVI
Sbjct:   20 VHGFVGAIGNTPLIRLNKLSEETGCEVLGKAEFQNPGGSVKDRAALYVIKDAEESGRLKPGGTVVEGTAGNTGIGLAHVCRSKGYKCVI 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124630.5007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FA84E9E1.220e-4478.65pyridoxal-phosphate dependent enzyme n=1 Tax=Clost... [more]
A0A0D0T091_9TREE2.420e-4478.65Unplaced genomic scaffold supercont1.13, whole gen... [more]
M5BSC4_THACB3.930e-4478.65Cysteine synthase A n=1 Tax=Thanatephorus cucumeri... [more]
K9SA83_9CYAN6.330e-4377.53Pyridoxal-5'-phosphate-dependent protein beta subu... [more]
A0A8H3FQT4_9LECA9.050e-4378.65Cysteine synthase 1 n=1 Tax=Gomphillus americanus ... [more]
A0A6H0Y6K3_9PEZI1.120e-4280.90PALP domain-containing protein n=2 Tax=Eukaryota T... [more]
A0A8H2Y594_9AGAM1.320e-4278.65Hypothetical protein n=6 Tax=Rhizoctonia solani Ta... [more]
A0A0H2TXB4_MAGP61.360e-4279.07PALP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8H8SKC8_9AGAM1.520e-4277.53Cysteine synthase n=2 Tax=Ceratobasidium sp. AG-Ba... [more]
A0A0B7FVZ6_THACB1.840e-4278.65Cysteine synthase A n=11 Tax=Rhizoctonia solani Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124630contigM-pyrifera_M_contig124630:74..340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score150.2
Seed ortholog evalue4.5e-34
Seed eggNOG ortholog1173025.GEI7407_3067
Preferred namecysB
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00021
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.Cysteine synthase
EggNOG OGs1G0T4@1117,1H7K5@1150,COG0031@1,COG0031@2
EC2.5.1.47
COG Functional cat.E
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.7082865-CDS-M-pyrifera_M_contig124630:73..3401622815763.7082865-CDS-M-pyrifera_M_contig124630:73..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124630 74..340 -
1692277558.3535302-CDS-M-pyrifera_M_contig124630:73..3401692277558.3535302-CDS-M-pyrifera_M_contig124630:73..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124630 74..340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124630.5007.1prot_M-pyrifera_M_contig124630.5007.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124630 74..340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124630.5007.1

>prot_M-pyrifera_M_contig124630.5007.1 ID=prot_M-pyrifera_M_contig124630.5007.1|Name=mRNA_M-pyrifera_M_contig124630.5007.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
AVDGFIGAVGNTPLLRLNRVSEETGCTVLGKAEFMNPGGSVKDRAALFLV
EDAERTGKLRPGGTVVEGTAGNTGIGLAHVCRAKGCVIV
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mRNA from alignment at M-pyrifera_M_contig124630:74..340-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124630.5007.1 ID=mRNA_M-pyrifera_M_contig124630.5007.1|Name=mRNA_M-pyrifera_M_contig124630.5007.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig124630:74..340- (Macrocystis pyrifera P11B4 male)
GCAGTGGATGGGTTCATTGGCGCAGTGGGCAACACCCCATTGCTTCGACT
GAACCGTGTGAGCGAGGAGACAGGGTGCACTGTGCTCGGCAAGGCAGAGT
TCATGAATCCAGGTGGGAGCGTGAAGGATCGCGCAGCCCTGTTCCTGGTT
GAGGACGCAGAGCGCACCGGGAAGCTGCGCCCTGGTGGTACCGTGGTTGA
GGGCACAGCTGGGAACACGGGCATTGGACTGGCGCACGTGTGCCGTGCGA
AAGGGTGCGTGATTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124630:74..340-

>mRNA_M-pyrifera_M_contig124630.5007.1 ID=mRNA_M-pyrifera_M_contig124630.5007.1|Name=mRNA_M-pyrifera_M_contig124630.5007.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig124630:74..340- (Macrocystis pyrifera P11B4 male)
GCAGTGGATGGGTTCATTGGCGCAGTGGGCAACACCCCATTGCTTCGACT
GAACCGTGTGAGCGAGGAGACAGGGTGCACTGTGCTCGGCAAGGCAGAGT
TCATGAATCCAGGTGGGAGCGTGAAGGATCGCGCAGCCCTGTTCCTGGTT
GAGGACGCAGAGCGCACCGGGAAGCTGCGCCCTGGTGGTACCGTGGTTGA
GGGCACAGCTGGGAACACGGGCATTGGACTGGCGCACGTGTGCCGTGCGA
AAGGGTGCGTGATTGTGGCAGTGGATGGGTTCATTGGCGCAGTGGGCAAC
ACCCCATTGCTTCGACTGAACCGTGTGAGCGAGGAGACAGGGTGCACTGT
GCTCGGCAAGGCAGAGTTCATGAATCCAGGTGGGAGCGTGAAGGATCGCG
CAGCCCTGTTCCTGGTTGAGGACGCAGAGCGCACCGGGAAGCTGCGCCCT
GGTGGTACCGTGGTTGAGGGCACAGCTGGGAACACGGGCATTGGACTGGC
GCACGTGTGCCGTGCGAAAGGGTGCGTGATTGTG
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