mRNA_M-pyrifera_M_contig124613.5004.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124613.5004.1
Unique NamemRNA_M-pyrifera_M_contig124613.5004.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124613.5004.1 vs. uniprot
Match: D8LUA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA4_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 5.300e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 VVISTGLRRIGSLQPVRLTLQTLCLTEQGISRMQSLDLTSLRRLYLHNNRISRITGLE 174
            VVI  GLRRI +L+PVR +L  +CL +QG+ +M+ L L  LR LYLH N+IS+I GL+
Sbjct:    3 VVIDCGLRRISNLEPVRHSLVKMCLCDQGLKKMEGLCLPGLRELYLHQNKISKIEGLD 60
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BLAST of mRNA_M-pyrifera_M_contig124613.5004.1 vs. uniprot
Match: A0A6A3SET5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SET5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.860e-6
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 VISTGLRRIGSLQPVRLTLQTLCLTEQGISRMQSLD-LTSLRRLYLHNNRISRITGLE 174
            +++  L  I +L+PV  +L  LCL+ Q I+RM  L  L  LR LYL  NRISRI GLE
Sbjct:   56 MVNCNLEVISNLEPVGASLVHLCLSNQNITRMSGLSSLRQLRHLYLQQNRISRIEGLE 113
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BLAST of mRNA_M-pyrifera_M_contig124613.5004.1 vs. uniprot
Match: A0A8K1C5F1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5F1_PYTOL)

HSP 1 Score: 51.2 bits (121), Expect = 5.590e-6
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 VISTGLRRIGSLQPVRLTLQTLCLTEQGISRMQSLDLTSLRRLYLHNNRISRITGLE 174
            +I+  L RI  L  VR +L  LCL+ Q I+RM++LDL  LR+LYL  N I RI GLE
Sbjct:   56 LINCKLTRIPLLTLVRESLVHLCLSAQAITRMEALDLPHLRKLYLQQNLIERIEGLE 112
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BLAST of mRNA_M-pyrifera_M_contig124613.5004.1 vs. uniprot
Match: A0A662YI96_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YI96_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.340e-5
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 VVISTGLRRIGSLQPVRLTLQTLCLTEQGISRMQSLD-LTSLRRLYLHNNRISRITGLE 174
            V+I+ GL+ + +L+PV  +L  LCL+ Q I+++  L  L  LRRLYL  NRI++I GLE
Sbjct:   16 VLINCGLKELSNLEPVGDSLVHLCLSNQNITQICGLSALPQLRRLYLQQNRIAQIEGLE 74
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BLAST of mRNA_M-pyrifera_M_contig124613.5004.1 vs. uniprot
Match: A0A662XPA9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPA9_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.470e-5
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 VVISTGLRRIGSLQPVRLTLQTLCLTEQGISRMQSLD-LTSLRRLYLHNNRISRITGLE 174
            V+I+ GL  + +L+PV  +L  LCL+ Q I++M  L  L  LR LYL  NRI++I GLE
Sbjct:   16 VLINCGLVELSNLEPVGASLVHLCLSNQSITQMCGLSALPQLRHLYLQQNRIAQIEGLE 74
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124613.5004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LUA4_ECTSI5.300e-1155.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A3SET5_9STRA2.860e-650.00Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A8K1C5F1_PYTOL5.590e-652.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662YI96_9STRA1.340e-547.46Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662XPA9_9STRA5.470e-547.46Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124613contigM-pyrifera_M_contig124613:306..479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue9.6e-09
Seed eggNOG ortholog2880.D8LUA4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.5286033-CDS-M-pyrifera_M_contig124613:305..4791622815763.5286033-CDS-M-pyrifera_M_contig124613:305..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124613 306..479 +
1692277558.2456417-CDS-M-pyrifera_M_contig124613:305..4791692277558.2456417-CDS-M-pyrifera_M_contig124613:305..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124613 306..479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124613.5004.1prot_M-pyrifera_M_contig124613.5004.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124613 306..479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124613.5004.1

>prot_M-pyrifera_M_contig124613.5004.1 ID=prot_M-pyrifera_M_contig124613.5004.1|Name=mRNA_M-pyrifera_M_contig124613.5004.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
VVISTGLRRIGSLQPVRLTLQTLCLTEQGISRMQSLDLTSLRRLYLHNNR
ISRITGLE
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mRNA from alignment at M-pyrifera_M_contig124613:306..479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124613.5004.1 ID=mRNA_M-pyrifera_M_contig124613.5004.1|Name=mRNA_M-pyrifera_M_contig124613.5004.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig124613:306..479+ (Macrocystis pyrifera P11B4 male)
GTAGTGATCTCCACTGGCCTACGACGCATTGGATCACTGCAACCAGTCCG
TCTGACGCTGCAGACGTTGTGTCTGACAGAGCAGGGCATCTCCAGGATGC
AGTCTCTGGACCTGACGTCGCTGCGCCGGTTGTACCTGCACAACAACCGC
ATCTCGCGCATCACAGGGCTCGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124613:306..479+

>mRNA_M-pyrifera_M_contig124613.5004.1 ID=mRNA_M-pyrifera_M_contig124613.5004.1|Name=mRNA_M-pyrifera_M_contig124613.5004.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig124613:306..479+ (Macrocystis pyrifera P11B4 male)
GTAGTGATCTCCACTGGCCTACGACGCATTGGATCACTGCAACCAGTCCG
TCTGACGCTGCAGACGTTGTGTCTGACAGAGCAGGGCATCTCCAGGATGC
AGTCTCTGGACCTGACGTCGCTGCGCCGGTTGTACCTGCACAACAACCGC
ATCTCGCGCATCACAGGGCTCGAAGTAGTGATCTCCACTGGCCTACGACG
CATTGGATCACTGCAACCAGTCCGTCTGACGCTGCAGACGTTGTGTCTGA
CAGAGCAGGGCATCTCCAGGATGCAGTCTCTGGACCTGACGTCGCTGCGC
CGGTTGTACCTGCACAACAACCGCATCTCGCGCATCACAGGGCTCGAA
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