mRNA_M-pyrifera_M_contig124607.5000.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124607.5000.1
Unique NamemRNA_M-pyrifera_M_contig124607.5000.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124607.5000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124607contigM-pyrifera_M_contig124607:1..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size501
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.3433754-UTR-M-pyrifera_M_contig124607:0..121622815763.3433754-UTR-M-pyrifera_M_contig124607:0..12Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124607 1..12 +
1692277558.1668296-UTR-M-pyrifera_M_contig124607:0..121692277558.1668296-UTR-M-pyrifera_M_contig124607:0..12Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124607 1..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.3544903-CDS-M-pyrifera_M_contig124607:12..5131622815763.3544903-CDS-M-pyrifera_M_contig124607:12..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124607 13..513 +
1692277558.1810813-CDS-M-pyrifera_M_contig124607:12..5131692277558.1810813-CDS-M-pyrifera_M_contig124607:12..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124607 13..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124607.5000.1prot_M-pyrifera_M_contig124607.5000.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124607 13..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124607.5000.1

>prot_M-pyrifera_M_contig124607.5000.1 ID=prot_M-pyrifera_M_contig124607.5000.1|Name=mRNA_M-pyrifera_M_contig124607.5000.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MLDYAGTPLVASEFGDQENIARHTHPVADYAERWRTRYDEPERATLGREL
LDELGADLVTAMGYDFDAATALLAAAGQAAGSADALTGKGEACFAAGDLE
AAERLFLDAVNVDPGFSLAHNNLGVLCAAREDHKRAIECFIAALTIHPAE
RDAIVNLIECAAAANRL
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mRNA from alignment at M-pyrifera_M_contig124607:1..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124607.5000.1 ID=mRNA_M-pyrifera_M_contig124607.5000.1|Name=mRNA_M-pyrifera_M_contig124607.5000.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig124607:1..513+ (Macrocystis pyrifera P11B4 male)
TTCGATCCCGCGATGCTCGATTATGCCGGGACCCCGCTCGTGGCAAGCGA
ATTCGGCGATCAGGAAAATATCGCGCGCCACACGCACCCGGTCGCTGACT
ATGCCGAGCGCTGGCGCACGCGCTATGACGAACCCGAACGCGCCACGCTC
GGACGCGAGTTGCTCGACGAACTCGGCGCGGATCTTGTCACGGCCATGGG
TTACGACTTCGACGCCGCCACTGCACTCCTTGCCGCCGCCGGGCAGGCGG
CCGGCTCGGCGGACGCGCTGACCGGCAAGGGCGAAGCGTGTTTCGCCGCC
GGCGATCTCGAGGCGGCCGAGCGGCTGTTCCTCGACGCCGTAAACGTCGA
CCCCGGGTTCTCACTCGCGCACAATAATCTTGGCGTTCTGTGCGCGGCCC
GCGAAGACCACAAACGGGCGATCGAGTGCTTCATTGCCGCGCTGACGATC
CATCCGGCCGAACGCGATGCGATCGTCAATCTGATCGAATGCGCCGCGGC
CGCGAATCGTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124607:1..513+

>mRNA_M-pyrifera_M_contig124607.5000.1 ID=mRNA_M-pyrifera_M_contig124607.5000.1|Name=mRNA_M-pyrifera_M_contig124607.5000.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig124607:1..513+ (Macrocystis pyrifera P11B4 male)
ATGCTCGATTATGCCGGGACCCCGCTCGTGGCAAGCGAATTCGGCGATCA
GGAAAATATCGCGCGCCACACGCACCCGGTCGCTGACTATGCCGAGCGCT
GGCGCACGCGCTATGACGAACCCGAACGCGCCACGCTCGGACGCGAGTTG
CTCGACGAACTCGGCGCGGATCTTGTCACGGCCATGGGTTACGACTTCGA
CGCCGCCACTGCACTCCTTGCCGCCGCCGGGCAGGCGGCCGGCTCGGCGG
ACGCGCTGACCGGCAAGGGCGAAGCGTGTTTCGCCGCCGGCGATCTCGAG
GCGGCCGAGCGGCTGTTCCTCGACGCCGTAAACGTCGACCCCGGGTTCTC
ACTCGCGCACAATAATCTTGGCGTTCTGTGCGCGGCCCGCGAAGACCACA
AACGGGCGATCGAGTGCTTCATTGCCGCGCTGACGATCCATCCGGCCGAA
CGCGATGCGATCGTCAATCTGATCGAATGCGCCGCGGCCGCGAATCGTCT
CATGCTCGATTATGCCGGGACCCCGCTCGTGGCAAGCGAATTCGGCGATC
AGGAAAATATCGCGCGCCACACGCACCCGGTCGCTGACTATGCCGAGCGC
TGGCGCACGCGCTATGACGAACCCGAACGCGCCACGCTCGGACGCGAGTT
GCTCGACGAACTCGGCGCGGATCTTGTCACGGCCATGGGTTACGACTTCG
ACGCCGCCACTGCACTCCTTGCCGCCGCCGGGCAGGCGGCCGGCTCGGCG
GACGCGCTGACCGGCAAGGGCGAAGCGTGTTTCGCCGCCGGCGATCTCGA
GGCGGCCGAGCGGCTGTTCCTCGACGCCGTAAACGTCGACCCCGGGTTCT
CACTCGCGCACAATAATCTTGGCGTTCTGTGCGCGGCCCGCGAAGACCAC
AAACGGGCGATCGAGTGCTTCATTGCCGCGCTGACGATCCATCCGGCCGA
ACGCGATGCGATCGTCAATCTGATCGAATGCGCCGCGGCCGCGAATCGTC
TC
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