mRNA_M-pyrifera_M_contig124592.4998.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124592.4998.1
Unique NamemRNA_M-pyrifera_M_contig124592.4998.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: A0A8J4PXA2_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PXA2_9MYCE)

HSP 1 Score: 92.0 bits (227), Expect = 8.080e-19
Identity = 51/150 (34.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 DVLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSNRADPKRSLPALYAITANDTQQNGLQTTKVRSIPLVSSFDCMVLHDMAEIHIFVGGNCS--EDFAQAAYQLVENLQKY 444
            ++L FI+EA++A G+V++HC  GISRSST  I YLM    W +++A+++ +  R I  PN G+   LM W  N ++P +  P L+ +  N           V  + L S F C +L       I++G  C+  ++F  AA   +  L KY
Sbjct:  960 EILEFIQEALKAKGRVYIHCQQGISRSSTFVILYLMWKEKWDFNQALEYTRQTRYIANPNPGFTGQLMWWQKNLSNPNKH-PQLFRLVKNVDIIAPRLVENVSYLSLDSRF-CFILAVAHCCFIWIGEKCTAIKEFVDAAKVAIYRLHKY 1107          
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: UPI000644990C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644990C)

HSP 1 Score: 90.9 bits (224), Expect = 2.000e-18
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 1
Query:    1 DVLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSNRADP--KRSLPALYAITANDTQQNGLQTTKVRSIPLVSSFDCMVLHDMAEIHIFVGGNC----SEDFAQAAYQLVENLQKY 444
            +VL F+E+A+E GG+V+VHC+ GISRSS   I  LMH   W +  A +  K  R I  PN G+   LM W     DP   + L  +  +  N T    +      S+    +  C +L     I+++VG  C     E + +AA   ++ LQKY
Sbjct:  621 EVLDFVEDAIERGGRVYVHCHQGISRSSAFVILCLMHKYDWDFKAAHEFTKERRYISNPNPGFTGQLMYWKKYHRDPIKNKKLYRMVQMLGNVTVPKAVPNMSYMSL---DARCCFILKVEDAIYLWVGEQCLGTLGEAYVEAARNAIQRLQKY 771          
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: UPI0004F42954 (putative dual specificity protein phosphatase n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F42954)

HSP 1 Score: 88.2 bits (217), Expect = 1.750e-17
Identity = 34/84 (40.48%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    4 VLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSNRADPKRSLPALY 255
            V+RF+EE    GGK F+HC+ G+SRS +  I Y+M   G CYD+A +++++ R++C PNAG+ ++L+ W++  A P  +   +Y
Sbjct:  546 VIRFVEEMRANGGKTFIHCHQGVSRSCSFVIAYVMWHEGMCYDRAFEYVRARRTVCSPNAGFYVNLLLWENQLATPVLNKAYVY 629          
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: A0A1X0NSN4_9TRYP (Putative dual specificity protein phosphatase n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NSN4_9TRYP)

HSP 1 Score: 87.8 bits (216), Expect = 2.410e-17
Identity = 33/76 (43.42%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    4 VLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSNRADP 231
            V+RF+EE   AGGK F+HC+ G+SRS +  I Y+M  +G CYD+A + +++ R++C PNAG+ ++L+ W++    P
Sbjct:  586 VIRFVEETRVAGGKTFIHCHQGVSRSCSFVIAYVMWQQGLCYDRAFEFVRARRTVCSPNAGFYVNLLFWENQLTTP 661          
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: F4PWD8_CAVFA (MAP kinase phosphatase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PWD8_CAVFA)

HSP 1 Score: 87.8 bits (216), Expect = 2.420e-17
Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 1
Query:    1 DVLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSNRADPKRSLPALYAITANDTQQNGLQTTKVRSIPLVSSFDCMVLHDMAEIHIFVGGNC----SEDFAQAAYQLVENLQKY 444
            +VL FI++A++ GGKVF+HC+ GISRSS   I +LM+   W ++ A  + K  R+I  PN G+   L+ W  N  +  +  P LY +      +   + +K+  + L S   C +L     I+++VG  C     E + + A   +  LQ+Y
Sbjct:  843 EVLDFIQDAIDRGGKVFIHCHQGISRSSAFVILHLMYKNNWEFNYAFDYTKERRAISNPNPGFTGQLLLWRKNSKEGWKE-PKLYRMVQLVGNKVVAKVSKITYLSLDSRC-CFILKVDNCIYLWVGEQCFGTTGEAYIEGARMAISRLQRY 992          
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: A0A7S0I5W6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I5W6_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 3.210e-17
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 DVLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSNRADP 231
            + + FIE+ V +GG+V++HC+ G+SRSS MAI YLM++ GW Y+ A   ++  R I  PNAG++  LM      A P
Sbjct:   24 EAVAFIEDVVSSGGRVYIHCHQGVSRSSAMAIAYLMYANGWGYEPAYAFVRERRGIASPNAGFIARLMQLAKRFAAP 100          
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: A0A3R7LEX3_9TRYP (Putative dual specificity protein phosphatase n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7LEX3_9TRYP)

HSP 1 Score: 87.0 bits (214), Expect = 4.440e-17
Identity = 32/76 (42.11%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    4 VLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSNRADP 231
            V+RF+EE+   GGK F+HC+ G+SRS +  I Y+M ++G CYD+A + +++ R++C PN G+ ++L+ W++  A P
Sbjct:  525 VIRFVEESRVKGGKTFIHCHQGVSRSCSFVIAYIMWNQGLCYDRAFEFVRARRNVCSPNTGFYVNLLLWENQLATP 600          
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: A0A7I8K5P2_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K5P2_SPIIN)

HSP 1 Score: 86.7 bits (213), Expect = 5.470e-17
Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 1
Query:    1 DVLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSN-RADP--KRSLPALYAITANDTQQNGLQTTKVRSIPLVSSFD---CMVLHDMAEIHIFVGGNCSEDFAQ----AAYQLV 426
            DV  + E+  E GG+VFVHC  G+SRS+++ I YLM  +G  ++ A + +KS R I  PN G+   LM       ADP   +SL  +Y +  +          K+ S P  S+ D     ++   + I +++G NC  + A+    AAYQ+V
Sbjct:  209 DVFDYFEDVREHGGRVFVHCCQGVSRSTSLVIAYLMWRKGQSFEDAFKLVKSARGIANPNVGFACQLMQCQKRVHADPLSPKSLVRMYRMAPHSEYDPLHLVPKILSEPSPSALDSRGAFIIRIFSSIFVWIGKNCEPEMARDAKAAAYQVV 360          
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: Q4DNY4_TRYCC (Uncharacterized protein n=7 Tax=Trypanosoma cruzi TaxID=5693 RepID=Q4DNY4_TRYCC)

HSP 1 Score: 85.9 bits (211), Expect = 1.130e-16
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    4 VLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSNRADP 231
            V+RF+EEA   GGK F+HC+ G+SRS +  I Y+M  +G CYD+A + ++S R +C PN G+ ++L+ W++  + P
Sbjct:  528 VIRFVEEARLKGGKTFIHCHQGVSRSCSFVIAYVMWHQGICYDRAFEFVRSKRQVCSPNTGFYVNLLLWENQLSTP 603          
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Match: A0A5C7HH76_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HH76_9ROSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.480e-16
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 1
Query:    1 DVLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHLKSLRSICEPNAGYVLSLMNWDSN----RADPKRSLPALYAITANDTQQNGLQTTKVRSIPLVSSFD---CMVLHDMAEIHIFVGGNCSEDFAQAAYQLVENLQKY 444
            DV  + E+  E GG+VFVHC  G+SRS+++ I YLM   G  ++ A Q++K+ R +  PN G+   L+          A P  S+  +Y +  + +        K+ + P V  FD     V+H  + I+++VG NC+   A +A +    + +Y
Sbjct:  188 DVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLQCQKRVHAVPASPN-SVLRIYRMAPHSSYDPLHLVPKMLNHPSVKGFDSRGAFVVHIPSAIYVWVGNNCNSVMAYSAREAANQVVRY 341          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124592.4998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4PXA2_9MYCE8.080e-1934.00Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI000644990C2.000e-1833.77hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI0004F429541.750e-1740.48putative dual specificity protein phosphatase n=1 ... [more]
A0A1X0NSN4_9TRYP2.410e-1743.42Putative dual specificity protein phosphatase n=1 ... [more]
F4PWD8_CAVFA2.420e-1732.24MAP kinase phosphatase n=1 Tax=Cavenderia fascicul... [more]
A0A7S0I5W6_9EUKA3.210e-1744.16Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A3R7LEX3_9TRYP4.440e-1742.11Putative dual specificity protein phosphatase n=1 ... [more]
A0A7I8K5P2_SPIIN5.470e-1733.55Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
Q4DNY4_TRYCC1.130e-1643.42Uncharacterized protein n=7 Tax=Trypanosoma cruzi ... [more]
A0A5C7HH76_9ROSI1.480e-1630.32Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124592contigM-pyrifera_M_contig124592:73..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue3.9e-14
Seed eggNOG ortholog5693.XP_803115.1
KEGG koko:K21278
KEGG Pathwayko04010,ko04726,ko05418,map04010,map04726,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dual specificity phosphatase, catalytic domain
EggNOG OGs3XUMX@5653,COG2453@1,KOG1716@2759
EC3.1.3.16,3.1.3.48
COG Functional cat.V
Best tax levelKinetoplastida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.2706723-CDS-M-pyrifera_M_contig124592:72..5161622815763.2706723-CDS-M-pyrifera_M_contig124592:72..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124592 73..516 -
1692277558.1374137-CDS-M-pyrifera_M_contig124592:72..5161692277558.1374137-CDS-M-pyrifera_M_contig124592:72..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124592 73..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124592.4998.1prot_M-pyrifera_M_contig124592.4998.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124592 73..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124592.4998.1

>prot_M-pyrifera_M_contig124592.4998.1 ID=prot_M-pyrifera_M_contig124592.4998.1|Name=mRNA_M-pyrifera_M_contig124592.4998.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
DVLRFIEEAVEAGGKVFVHCNYGISRSSTMAICYLMHSRGWCYDKAIQHL
KSLRSICEPNAGYVLSLMNWDSNRADPKRSLPALYAITANDTQQNGLQTT
KVRSIPLVSSFDCMVLHDMAEIHIFVGGNCSEDFAQAAYQLVENLQKY
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mRNA from alignment at M-pyrifera_M_contig124592:73..516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124592.4998.1 ID=mRNA_M-pyrifera_M_contig124592.4998.1|Name=mRNA_M-pyrifera_M_contig124592.4998.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig124592:73..516- (Macrocystis pyrifera P11B4 male)
GATGTCCTCCGTTTCATTGAAGAAGCGGTGGAGGCAGGCGGCAAGGTGTT CGTGCACTGCAACTACGGCATCTCGAGGAGCAGCACCATGGCCATTTGCT ACCTCATGCACTCAAGAGGATGGTGCTACGACAAGGCCATCCAACATTTG AAGAGCTTGCGGTCGATCTGCGAGCCCAACGCTGGCTATGTGCTCTCCTT GATGAATTGGGACAGCAACAGAGCAGACCCCAAGCGCAGCCTCCCCGCCC TGTACGCCATCACCGCCAACGACACACAGCAGAACGGTTTGCAGACGACC AAGGTCAGGAGCATTCCGCTGGTCTCCAGCTTCGACTGCATGGTCCTCCA CGACATGGCGGAGATCCACATCTTTGTGGGAGGCAACTGCAGCGAAGACT TTGCCCAGGCAGCCTACCAGCTCGTGGAGAACCTGCAGAAGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124592:73..516-

>mRNA_M-pyrifera_M_contig124592.4998.1 ID=mRNA_M-pyrifera_M_contig124592.4998.1|Name=mRNA_M-pyrifera_M_contig124592.4998.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig124592:73..516- (Macrocystis pyrifera P11B4 male)
GATGTCCTCCGTTTCATTGAAGAAGCGGTGGAGGCAGGCGGCAAGGTGTT
CGTGCACTGCAACTACGGCATCTCGAGGAGCAGCACCATGGCCATTTGCT
ACCTCATGCACTCAAGAGGATGGTGCTACGACAAGGCCATCCAACATTTG
AAGAGCTTGCGGTCGATCTGCGAGCCCAACGCTGGCTATGTGCTCTCCTT
GATGAATTGGGACAGCAACAGAGCAGACCCCAAGCGCAGCCTCCCCGCCC
TGTACGCCATCACCGCCAACGACACACAGCAGAACGGTTTGCAGACGACC
AAGGTCAGGAGCATTCCGCTGGTCTCCAGCTTCGACTGCATGGTCCTCCA
CGACATGGCGGAGATCCACATCTTTGTGGGAGGCAACTGCAGCGAAGACT
TTGCCCAGGCAGCCTACCAGCTCGTGGAGAACCTGCAGAAGTATGATGTC
CTCCGTTTCATTGAAGAAGCGGTGGAGGCAGGCGGCAAGGTGTTCGTGCA
CTGCAACTACGGCATCTCGAGGAGCAGCACCATGGCCATTTGCTACCTCA
TGCACTCAAGAGGATGGTGCTACGACAAGGCCATCCAACATTTGAAGAGC
TTGCGGTCGATCTGCGAGCCCAACGCTGGCTATGTGCTCTCCTTGATGAA
TTGGGACAGCAACAGAGCAGACCCCAAGCGCAGCCTCCCCGCCCTGTACG
CCATCACCGCCAACGACACACAGCAGAACGGTTTGCAGACGACCAAGGTC
AGGAGCATTCCGCTGGTCTCCAGCTTCGACTGCATGGTCCTCCACGACAT
GGCGGAGATCCACATCTTTGTGGGAGGCAACTGCAGCGAAGACTTTGCCC
AGGCAGCCTACCAGCTCGTGGAGAACCTGCAGAAGTAT
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