mRNA_M-pyrifera_M_contig12450.4988.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12450.4988.1
Unique NamemRNA_M-pyrifera_M_contig12450.4988.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12450.4988.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 2.750e-61
Identity = 223/406 (54.93%), Postives = 238/406 (58.62%), Query Frame = 1 
Query:    1 KKIRSVNKSIKYVELLARSATGADLQRLQDQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTGGVHGRTGGGAPLPPGGVPPGVPSAPGPDPGNAS------PVTPRQEGGAEGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQNPYGMPPHMSMAGMGMGYSPYVHMAAQAQQQAMAHXXXXXXXXXXXXXXGGEGTTPAVT--------------------------------------SPMHAYGHLAMYGGYPGMISMPYPFQNHGYPGMPGYXXXXXXXXXXXXXXXXEHM--ASSMGMSGMAAMQLAAQTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQH---IDLNQPNEVQNHQLTY 1071
            ++IRSVNKSIKYVELLAR+A G D QRLQ+QLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTGG                     +    D GN +      P  P++E G  G G                      XXXXXXXXXXXXX        AQ+PYGMPPHMSMAGMGMGYSPYVHMAA         XXXXXXXXXXXXXX                                                SPMH YG  AMYGGYPGM+ MPYPFQ HGYPGMPGY                +    +SS GMSGMAAMQLAAQ+M  XXXXXXXXXXXXXXXXXXXXXXXXXX  XX      PQH   IDLNQP+EVQ+HQLTY
Sbjct:  150 RQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTGGXXXXXXXXXXXXXXXXXXXXXATEFGDLGNPTSPLAEAPGVPQEEAGPAGVGEASAGGDGAYGPDIQAMEEAAAXXXXXXXXXXXXXA-------AQSPYGMPPHMSMAGMGMGYSPYVHMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPMHGYGLHAMYGGYPGMMGMPYPFQAHGYPGMPGYGVPGMGSYPSLAAGGGDPTLASSSFGMSGMAAMQLAAQSMHQXXXXXXXXXXXXXXXXXXXXXXXXXXHPXXYHDPNHPQHQQHIDLNQPHEVQSHQLTY 548
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BLAST of mRNA_M-pyrifera_M_contig12450.4988.1 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.390e-29
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    1 KKIRSVNKSIKYVELLARSATGADLQRLQDQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTG 225
            ++IRSVNKSIKYVELLAR+A G D QRLQ+QLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTG
Sbjct:  148 RQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTG 222
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12450.4988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0H9_9PHAE2.750e-6154.93RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LJT6_ECTSI3.390e-2990.67Putative NIN-like transcription factor n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12450contigM-pyrifera_M_contig12450:68..1579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNIN-like transcription factor
Ec32 orthologEc-23_000070.1
Exons1
Model size1512
Cds size1512
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.5623827-CDS-M-pyrifera_M_contig12450:67..15791622815762.5623827-CDS-M-pyrifera_M_contig12450:67..1579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12450 68..1579 +
1692277557.6879845-CDS-M-pyrifera_M_contig12450:67..15791692277557.6879845-CDS-M-pyrifera_M_contig12450:67..1579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12450 68..1579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12450.4988.1prot_M-pyrifera_M_contig12450.4988.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12450 68..1579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12450.4988.1

>prot_M-pyrifera_M_contig12450.4988.1 ID=prot_M-pyrifera_M_contig12450.4988.1|Name=mRNA_M-pyrifera_M_contig12450.4988.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=504bp
KKIRSVNKSIKYVELLARSATGADLQRLQDQLVSLHYKKQLICQAATTGA
SAKVRKSILQMRPEELDAETLLRTGGVHGRTGGGAPLPPGGVPPGVPSAP
GPDPGNASPVTPRQEGGAEGGGGAGGGGGAGGEGHQDAQSMEAAGAAAAA
AAAAASAAAAAAAAAAQNPYGMPPHMSMAGMGMGYSPYVHMAAQAQQQAM
AHHLHHQQQQQPHQQQGGEGTTPAVTSPMHAYGHLAMYGGYPGMISMPYP
FQNHGYPGMPGYGVPGMGGYPSLASGGGEHMASSMGMSGMAAMQLAAQTM
QQQQQEHAQQFHEQHQQHHQQAQTLQQAQQQAQTQQQQPQHIDLNQPNEV
QNHQLTYHQHHVHQRQMQQMQHDAAIAEAAASAAASAAASAAAAAATAAN
TTPSAGSNPQSPTDSGQAEADGSNIDGAEATPSQRSRSSEEEASDRPAVD
SSDRDAAPSVAAAAVGDAQARAEEDHGSASVSGAAGATEGGEEGGGDAGA
PPA*
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mRNA from alignment at M-pyrifera_M_contig12450:68..1579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12450.4988.1 ID=mRNA_M-pyrifera_M_contig12450.4988.1|Name=mRNA_M-pyrifera_M_contig12450.4988.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at M-pyrifera_M_contig12450:68..1579+ (Macrocystis pyrifera P11B4 male)
AAAAAGATCCGAAGCGTCAATAAATCCATCAAGTACGTCGAACTCCTGGC
TCGGTCCGCCACGGGGGCTGACCTCCAGCGGTTACAGGACCAGCTCGTAT
CCCTCCACTACAAGAAGCAGCTCATCTGCCAGGCAGCCACCACGGGCGCC
TCTGCCAAAGTCCGTAAATCGATCCTTCAGATGCGACCCGAGGAGCTGGA
TGCTGAGACCCTCCTCCGTACGGGCGGAGTTCATGGACGAACTGGAGGGG
GTGCGCCGCTACCGCCGGGGGGTGTACCCCCCGGCGTGCCGAGCGCCCCC
GGGCCTGACCCAGGAAACGCGAGTCCTGTGACACCGCGGCAAGAGGGGGG
GGCGGAGGGTGGGGGGGGTGCTGGTGGGGGTGGGGGGGCGGGGGGCGAGG
GGCACCAGGATGCGCAATCAATGGAGGCGGCGGGCGCGGCGGCTGCGGCG
GCTGCTGCTGCGGCTTCTGCTGCTGCTGCTGCGGCGGCGGCGGCTGCGCA
AAACCCGTACGGTATGCCGCCGCATATGTCCATGGCGGGGATGGGTATGG
GGTATAGCCCGTATGTGCATATGGCCGCGCAGGCGCAGCAGCAGGCGATG
GCGCACCACTTGCACCACCAGCAACAGCAGCAGCCTCATCAACAGCAGGG
CGGGGAGGGGACTACTCCTGCTGTCACGTCGCCGATGCACGCGTATGGTC
ACCTGGCGATGTATGGGGGCTATCCCGGCATGATAAGCATGCCTTACCCT
TTTCAGAACCACGGTTATCCAGGAATGCCGGGGTATGGTGTGCCTGGGAT
GGGGGGGTACCCGAGCTTAGCCTCGGGGGGCGGCGAGCATATGGCGTCGT
CGATGGGGATGAGTGGAATGGCAGCGATGCAGCTCGCGGCGCAGACAATG
CAGCAGCAGCAGCAAGAGCATGCGCAGCAGTTCCACGAGCAGCACCAACA
GCACCACCAGCAGGCGCAGACATTGCAGCAGGCGCAGCAGCAGGCCCAGA
CGCAGCAGCAGCAGCCACAACACATCGACCTCAACCAGCCCAACGAGGTC
CAAAATCACCAGCTTACGTACCACCAGCACCACGTCCACCAGAGGCAGAT
GCAGCAGATGCAGCACGACGCAGCCATCGCGGAAGCTGCCGCGTCTGCTG
CTGCTTCGGCCGCGGCCTCAGCTGCCGCCGCTGCCGCCACCGCCGCGAAC
ACCACCCCTTCCGCGGGGAGTAATCCGCAGTCGCCCACGGATAGCGGACA
AGCCGAAGCCGACGGGAGCAATATCGACGGGGCGGAGGCTACCCCATCTC
AGAGGAGCAGGAGTTCAGAAGAGGAAGCATCTGACCGGCCCGCGGTAGAC
AGTAGTGACCGGGATGCTGCGCCAAGCGTAGCAGCCGCCGCTGTGGGGGA
CGCACAAGCTAGGGCTGAAGAAGACCATGGCAGTGCTAGCGTTAGCGGTG
CCGCTGGTGCCACGGAGGGAGGGGAGGAGGGCGGGGGCGATGCAGGGGCG
CCGCCGGCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12450:68..1579+

>mRNA_M-pyrifera_M_contig12450.4988.1 ID=mRNA_M-pyrifera_M_contig12450.4988.1|Name=mRNA_M-pyrifera_M_contig12450.4988.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3024bp|location=Sequence derived from alignment at M-pyrifera_M_contig12450:68..1579+ (Macrocystis pyrifera P11B4 male)
AAAAAGATCCGAAGCGTCAATAAATCCATCAAGTACGTCGAACTCCTGGC
TCGGTCCGCCACGGGGGCTGACCTCCAGCGGTTACAGGACCAGCTCGTAT
CCCTCCACTACAAGAAGCAGCTCATCTGCCAGGCAGCCACCACGGGCGCC
TCTGCCAAAGTCCGTAAATCGATCCTTCAGATGCGACCCGAGGAGCTGGA
TGCTGAGACCCTCCTCCGTACGGGCGGAGTTCATGGACGAACTGGAGGGG
GTGCGCCGCTACCGCCGGGGGGTGTACCCCCCGGCGTGCCGAGCGCCCCC
GGGCCTGACCCAGGAAACGCGAGTCCTGTGACACCGCGGCAAGAGGGGGG
GGCGGAGGGTGGGGGGGGTGCTGGTGGGGGTGGGGGGGCGGGGGGCGAGG
GGCACCAGGATGCGCAATCAATGGAGGCGGCGGGCGCGGCGGCTGCGGCG
GCTGCTGCTGCGGCTTCTGCTGCTGCTGCTGCGGCGGCGGCGGCTGCGCA
AAACCCGTACGGTATGCCGCCGCATATGTCCATGGCGGGGATGGGTATGG
GGTATAGCCCGTATGTGCATATGGCCGCGCAGGCGCAGCAGCAGGCGATG
GCGCACCACTTGCACCACCAGCAACAGCAGCAGCCTCATCAACAGCAGGG
CGGGGAGGGGACTACTCCTGCTGTCACGTCGCCGATGCACGCGTATGGTC
ACCTGGCGATGTATGGGGGCTATCCCGGCATGATAAGCATGCCTTACCCT
TTTCAGAACCACGGTTATCCAGGAATGCCGGGGTATGGTGTGCCTGGGAT
GGGGGGGTACCCGAGCTTAGCCTCGGGGGGCGGCGAGCATATGGCGTCGT
CGATGGGGATGAGTGGAATGGCAGCGATGCAGCTCGCGGCGCAGACAATG
CAGCAGCAGCAGCAAGAGCATGCGCAGCAGTTCCACGAGCAGCACCAACA
GCACCACCAGCAGGCGCAGACATTGCAGCAGGCGCAGCAGCAGGCCCAGA
CGCAGCAGCAGCAGCCACAACACATCGACCTCAACCAGCCCAACGAGGTC
CAAAATCACCAGCTTACGTACCACCAGCACCACGTCCACCAGAGGCAGAT
GCAGCAGATGCAGCACGACGCAGCCATCGCGGAAGCTGCCGCGTCTGCTG
CTGCTTCGGCCGCGGCCTCAGCTGCCGCCGCTGCCGCCACCGCCGCGAAC
ACCACCCCTTCCGCGGGGAGTAATCCGCAGTCGCCCACGGATAGCGGACA
AGCCGAAGCCGACGGGAGCAATATCGACGGGGCGGAGGCTACCCCATCTC
AGAGGAGCAGGAGTTCAGAAGAGGAAGCATCTGACCGGCCCGCGGTAGAC
AGTAGTGACCGGGATGCTGCGCCAAGCGTAGCAGCCGCCGCTGTGGGGGA
CGCACAAGCTAGGGCTGAAGAAGACCATGGCAGTGCTAGCGTTAGCGGTG
CCGCTGGTGCCACGGAGGGAGGGGAGGAGGGCGGGGGCGATGCAGGGGCG
CCGCCGGCTTGAAAAAAGATCCGAAGCGTCAATAAATCCATCAAGTACGT
CGAACTCCTGGCTCGGTCCGCCACGGGGGCTGACCTCCAGCGGTTACAGG
ACCAGCTCGTATCCCTCCACTACAAGAAGCAGCTCATCTGCCAGGCAGCC
ACCACGGGCGCCTCTGCCAAAGTCCGTAAATCGATCCTTCAGATGCGACC
CGAGGAGCTGGATGCTGAGACCCTCCTCCGTACGGGCGGAGTTCATGGAC
GAACTGGAGGGGGTGCGCCGCTACCGCCGGGGGGTGTACCCCCCGGCGTG
CCGAGCGCCCCCGGGCCTGACCCAGGAAACGCGAGTCCTGTGACACCGCG
GCAAGAGGGGGGGGCGGAGGGTGGGGGGGGTGCTGGTGGGGGTGGGGGGG
CGGGGGGCGAGGGGCACCAGGATGCGCAATCAATGGAGGCGGCGGGCGCG
GCGGCTGCGGCGGCTGCTGCTGCGGCTTCTGCTGCTGCTGCTGCGGCGGC
GGCGGCTGCGCAAAACCCGTACGGTATGCCGCCGCATATGTCCATGGCGG
GGATGGGTATGGGGTATAGCCCGTATGTGCATATGGCCGCGCAGGCGCAG
CAGCAGGCGATGGCGCACCACTTGCACCACCAGCAACAGCAGCAGCCTCA
TCAACAGCAGGGCGGGGAGGGGACTACTCCTGCTGTCACGTCGCCGATGC
ACGCGTATGGTCACCTGGCGATGTATGGGGGCTATCCCGGCATGATAAGC
ATGCCTTACCCTTTTCAGAACCACGGTTATCCAGGAATGCCGGGGTATGG
TGTGCCTGGGATGGGGGGGTACCCGAGCTTAGCCTCGGGGGGCGGCGAGC
ATATGGCGTCGTCGATGGGGATGAGTGGAATGGCAGCGATGCAGCTCGCG
GCGCAGACAATGCAGCAGCAGCAGCAAGAGCATGCGCAGCAGTTCCACGA
GCAGCACCAACAGCACCACCAGCAGGCGCAGACATTGCAGCAGGCGCAGC
AGCAGGCCCAGACGCAGCAGCAGCAGCCACAACACATCGACCTCAACCAG
CCCAACGAGGTCCAAAATCACCAGCTTACGTACCACCAGCACCACGTCCA
CCAGAGGCAGATGCAGCAGATGCAGCACGACGCAGCCATCGCGGAAGCTG
CCGCGTCTGCTGCTGCTTCGGCCGCGGCCTCAGCTGCCGCCGCTGCCGCC
ACCGCCGCGAACACCACCCCTTCCGCGGGGAGTAATCCGCAGTCGCCCAC
GGATAGCGGACAAGCCGAAGCCGACGGGAGCAATATCGACGGGGCGGAGG
CTACCCCATCTCAGAGGAGCAGGAGTTCAGAAGAGGAAGCATCTGACCGG
CCCGCGGTAGACAGTAGTGACCGGGATGCTGCGCCAAGCGTAGCAGCCGC
CGCTGTGGGGGACGCACAAGCTAGGGCTGAAGAAGACCATGGCAGTGCTA
GCGTTAGCGGTGCCGCTGGTGCCACGGAGGGAGGGGAGGAGGGCGGGGGC
GATGCAGGGGCGCCGCCGGCTTGA
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