mRNA_M-pyrifera_M_contig124495.4987.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124495.4987.1
Unique NamemRNA_M-pyrifera_M_contig124495.4987.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A1M2VIU6_TRAPU (Coatomer subunit alpha (Fragment) n=4 Tax=Trametes TaxID=5324 RepID=A0A1M2VIU6_TRAPU)

HSP 1 Score: 68.6 bits (166), Expect = 5.920e-12
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 AASLHSGTVLILDYLRGVVVDSLSAHTGPVRGVCFHPVQEGTLATGGDDYKVVVWDV 174
            AASLH+G+V + +Y  GV+VD    H GPVR V  HP     L TGGDDYK+ VWD+
Sbjct:   48 AASLHNGSVQLWNYRMGVLVDRFEEHEGPVRAVAIHP-SRALLCTGGDDYKIKVWDI 103
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BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A812TJ18_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812TJ18_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 7.720e-12
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 VAASLHSGTVLILDYLRGVVVDSLSAHTG-PVRGVCFHPVQEGTLATGGDDYKVVVWDVAQRRPRF 195
            + ASLH+GT+ + DY  G ++D    H G PVRG+CFH + +    +GGDDYK+ VW+   RR  F
Sbjct:   33 ILASLHNGTIQLWDYRIGSLIDKFEEHEGGPVRGICFH-LSQPLFVSGGDDYKIKVWNYKLRRCIF 97
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BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A5A8DF99_CAFRO (Uncharacterized protein n=7 Tax=Sar TaxID=2698737 RepID=A0A5A8DF99_CAFRO)

HSP 1 Score: 65.9 bits (159), Expect = 5.280e-11
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 VAASLHSGTVLILDYLRGVVVDSLSAHTGPVRGVCFHPVQEGTLATGGDDYKVVVWDVAQRRPRF 195
            + ASLH G V + DY  G  ++  + H GPVRG+  HP  +    +GGDDY + VW +AQR+  F
Sbjct:   24 ILASLHDGIVQLWDYRNGTCIERFAGHEGPVRGLDVHPSGQPLFVSGGDDYLIKVWSLAQRKCLF 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A7S4RUA4_9DINO (Coatomer subunit alpha n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RUA4_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 7.210e-11
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 VAASLHSGTVLILDYLRGVVVDSLSAHTG-PVRGVCFHPVQEGTLATGGDDYKVVVWDVAQRRPRF 195
            V ASLH+GT+ + DY  G ++D    H G PVRGVCFH  Q     +GGDDYK+ VW+   RR  F
Sbjct:   41 VLASLHNGTIQLWDYRIGSMIDKFEEHEGGPVRGVCFHASQP-LFVSGGDDYKIKVWNYKLRRCIF 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A812YMX2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812YMX2_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 7.710e-11
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 VAASLHSGTVLILDYLRGVVVDSLSAHTG-PVRGVCFHPVQEGTLATGGDDYKVVVWDVAQRRPRF 195
            + ASLH+GT+ + DY  G ++D    H G PVRG+CFH + +    +GGDDYK+ VW+   RR  F
Sbjct:   11 ILASLHNGTIQLWDYRIGSLIDKFEEHEGGPVRGICFH-LSQPLFVSGGDDYKIKVWNYKLRRCIF 75
[Close]
BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A813JAL1_POLGL (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JAL1_POLGL)

HSP 1 Score: 65.1 bits (157), Expect = 9.690e-11
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 VAASLHSGTVLILDYLRGVVVDSLSAHTG-PVRGVCFHPVQEGTLATGGDDYKVVVWDVAQRRPRF 195
            + ASLH+GT+ + DY  G ++D    H G PVRGVCFH  Q     +GGDDYK+ VW+   RR  F
Sbjct:   24 ILASLHNGTIQLWDYRIGSLIDKFEEHEGGPVRGVCFHLTQP-LFVSGGDDYKIKVWNYKLRRCIF 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A813DJ04_POLGL (Coatomer subunit alpha n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DJ04_POLGL)

HSP 1 Score: 65.1 bits (157), Expect = 9.860e-11
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 VAASLHSGTVLILDYLRGVVVDSLSAHTG-PVRGVCFHPVQEGTLATGGDDYKVVVWDVAQRRPRF 195
            + ASLH+GT+ + DY  G ++D    H G PVRGVCFH  Q     +GGDDYK+ VW+   RR  F
Sbjct:   24 ILASLHNGTIQLWDYRIGSLIDKFEEHEGGPVRGVCFHLTQP-LFVSGGDDYKIKVWNYKLRRCIF 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A812JC94_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812JC94_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 1.310e-10
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 VAASLHSGTVLILDYLRGVVVDSLSAHTG-PVRGVCFHPVQEGTLATGGDDYKVVVWDVAQRRPRF 195
            + ASLH+GT+ + DY  G ++D    H G PVRG+CFH + +    +GGDDYK+ VW+   RR  F
Sbjct:   18 ILASLHNGTIQLWDYRIGSLIDKFEEHEGGPVRGICFH-LSQPLFVSGGDDYKIKVWNYKLRRCIF 82
[Close]
BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A1Q9DJU2_SYMMI (Coatomer subunit alpha-1 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DJU2_SYMMI)

HSP 1 Score: 64.7 bits (156), Expect = 1.340e-10
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 VAASLHSGTVLILDYLRGVVVDSLSAHTG-PVRGVCFHPVQEGTLATGGDDYKVVVWDVAQRRPRF 195
            + ASLH+GT+ + DY  G ++D    H G PVRG+CFH + +    +GGDDYK+ VW+   RR  F
Sbjct:   24 ILASLHNGTIQLWDYRIGSLIDKFEEHEGGPVRGICFH-LSQPLFVSGGDDYKIKVWNYKLRRCIF 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Match: A0A813A966_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A966_SYMMI)

HSP 1 Score: 64.7 bits (156), Expect = 1.350e-10
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 VAASLHSGTVLILDYLRGVVVDSLSAHTG-PVRGVCFHPVQEGTLATGGDDYKVVVWDVAQRRPRF 195
            + ASLH+GT+ + DY  G ++D    H G PVRG+CFH + +    +GGDDYK+ VW+   RR  F
Sbjct:   24 ILASLHNGTIQLWDYRIGSLIDKFEEHEGGPVRGICFH-LSQPLFVSGGDDYKIKVWNYKLRRCIF 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124495.4987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2VIU6_TRAPU5.920e-1254.39Coatomer subunit alpha (Fragment) n=4 Tax=Trametes... [more]
A0A812TJ18_9DINO7.720e-1245.45Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A5A8DF99_CAFRO5.280e-1143.08Uncharacterized protein n=7 Tax=Sar TaxID=2698737 ... [more]
A0A7S4RUA4_9DINO7.210e-1150.00Coatomer subunit alpha n=1 Tax=Alexandrium monilat... [more]
A0A812YMX2_9DINO7.710e-1145.45Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A813JAL1_POLGL9.690e-1148.48Peptide-methionine (S)-S-oxide reductase n=1 Tax=P... [more]
A0A813DJ04_POLGL9.860e-1148.48Coatomer subunit alpha n=2 Tax=Polarella glacialis... [more]
A0A812JC94_9DINO1.310e-1045.45Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A1Q9DJU2_SYMMI1.340e-1045.45Coatomer subunit alpha-1 n=1 Tax=Symbiodinium micr... [more]
A0A813A966_SYMMI1.350e-1045.45Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124495contigM-pyrifera_M_contig124495:182..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.5280616-CDS-M-pyrifera_M_contig124495:181..3761622815762.5280616-CDS-M-pyrifera_M_contig124495:181..376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124495 182..376 +
1692277557.6757967-CDS-M-pyrifera_M_contig124495:181..3761692277557.6757967-CDS-M-pyrifera_M_contig124495:181..376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124495 182..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124495.4987.1prot_M-pyrifera_M_contig124495.4987.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124495 182..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124495.4987.1

>prot_M-pyrifera_M_contig124495.4987.1 ID=prot_M-pyrifera_M_contig124495.4987.1|Name=mRNA_M-pyrifera_M_contig124495.4987.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
VAASLHSGTVLILDYLRGVVVDSLSAHTGPVRGVCFHPVQEGTLATGGDD
YKVVVWDVAQRRPRF
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mRNA from alignment at M-pyrifera_M_contig124495:182..376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124495.4987.1 ID=mRNA_M-pyrifera_M_contig124495.4987.1|Name=mRNA_M-pyrifera_M_contig124495.4987.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig124495:182..376+ (Macrocystis pyrifera P11B4 male)
GTGGCTGCGTCGCTGCACAGCGGGACGGTTTTGATTTTGGATTACCTTCG
CGGAGTTGTGGTGGATTCCCTTTCTGCACACACGGGCCCTGTGCGAGGGG
TGTGCTTCCACCCAGTGCAAGAAGGCACCTTGGCAACAGGTGGCGATGAC
TACAAAGTGGTGGTGTGGGACGTGGCACAGCGTAGACCACGATTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124495:182..376+

>mRNA_M-pyrifera_M_contig124495.4987.1 ID=mRNA_M-pyrifera_M_contig124495.4987.1|Name=mRNA_M-pyrifera_M_contig124495.4987.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig124495:182..376+ (Macrocystis pyrifera P11B4 male)
GTGGCTGCGTCGCTGCACAGCGGGACGGTTTTGATTTTGGATTACCTTCG
CGGAGTTGTGGTGGATTCCCTTTCTGCACACACGGGCCCTGTGCGAGGGG
TGTGCTTCCACCCAGTGCAAGAAGGCACCTTGGCAACAGGTGGCGATGAC
TACAAAGTGGTGGTGTGGGACGTGGCACAGCGTAGACCACGATTTGTGGC
TGCGTCGCTGCACAGCGGGACGGTTTTGATTTTGGATTACCTTCGCGGAG
TTGTGGTGGATTCCCTTTCTGCACACACGGGCCCTGTGCGAGGGGTGTGC
TTCCACCCAGTGCAAGAAGGCACCTTGGCAACAGGTGGCGATGACTACAA
AGTGGTGGTGTGGGACGTGGCACAGCGTAGACCACGATTT
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