mRNA_M-pyrifera_M_contig124492.4986.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124492.4986.1
Unique NamemRNA_M-pyrifera_M_contig124492.4986.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: A0A812XZX5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XZX5_9DINO)

HSP 1 Score: 163 bits (413), Expect = 1.470e-48
Identity = 74/97 (76.29%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:    1 ATMGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSRD 291
            A +G++LY +AL LL F+GIN+WNGYADTG+MGIGFTG+CV LASLFL+LDFQ+IE G+    PKYMEWVGAWGLMVTLVWLYIE+LRLL+KLQSRD
Sbjct:  158 AAIGVILYIIALFLLPFIGINIWNGYADTGMMGIGFTGICVALASLFLVLDFQYIEQGVKTGQPKYMEWVGAWGLMVTLVWLYIEILRLLSKLQSRD 254
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BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: A0A3D4UL64_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UL64_9BACT)

HSP 1 Score: 152 bits (385), Expect = 3.620e-44
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 ATMGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSRD 291
            A  GL+ YT+ + +L   G+ +WNGYADTG+MGIGFT LC GLAS+FLLLDFQFIE G+   APKYMEWVGAWGLMVTLVWLYIE+LRLL+KLQSRD
Sbjct:  172 ALFGLIGYTLLIWVLSIFGVGIWNGYADTGMMGIGFTVLCAGLASMFLLLDFQFIEKGVQQGAPKYMEWVGAWGLMVTLVWLYIELLRLLSKLQSRD 268
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BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: A0A3M2C9V0_9BACT (Bax inhibitor-1/YccA family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2C9V0_9BACT)

HSP 1 Score: 144 bits (364), Expect = 6.470e-41
Identity = 64/96 (66.67%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    4 TMGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSRD 291
            ++GL++Y   L +L   G+ +WNG+ADTG++GI FTG+C+GLASL+LLLDF+FIE G+   APKYMEWVGAWGLMVTLVW+YIEVLRLL+KL+S D
Sbjct:  181 SVGLMIYVALLWILSMFGVGIWNGFADTGMLGIAFTGVCLGLASLYLLLDFEFIEEGVKAGAPKYMEWVGAWGLMVTLVWVYIEVLRLLSKLRSND 276
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BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: A0A7D8UHB8_9BACT (Bax inhibitor-1/YccA family protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7D8UHB8_9BACT)

HSP 1 Score: 109 bits (273), Expect = 4.340e-27
Identity = 58/95 (61.05%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:   10 GLVLYTVALMLLR-FVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSRD 291
             ++LY +AL++   F  + L N YAD+  +GIGF+ L VGLASLFL+LDFQFIEAG   R PKYMEW    GL+VTLVWLYIE+LRLLAKL+  D
Sbjct:  208 AVLLYMLALIVGNGFFNLGLPNLYADSSPLGIGFSLLLVGLASLFLILDFQFIEAGAQQRLPKYMEWYAGAGLLVTLVWLYIEILRLLAKLRGGD 302
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BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: A0A7V8GP08_9GAMM (Uncharacterized protein n=2 Tax=Pseudoxanthomonas TaxID=83618 RepID=A0A7V8GP08_9GAMM)

HSP 1 Score: 107 bits (268), Expect = 8.620e-27
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    1 ATMGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSRD 291
            AT G+ L  +A   LRF  +N+     D+G++GIGF+   V +A+L L+LDF FIE G+   APKYMEW GA+GLMVTLVWLY+E LRLLAKLQSRD
Sbjct:  156 ATGGIALVYLASFALRFFNVNI-PFIHDSGLIGIGFSLFVVVVAALNLVLDFDFIETGVERGAPKYMEWYGAFGLMVTLVWLYVEFLRLLAKLQSRD 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: UPI001782DFBF (Bax inhibitor-1/YccA family protein n=1 Tax=Xanthomonas sp. XNM01 TaxID=2769289 RepID=UPI001782DFBF)

HSP 1 Score: 107 bits (268), Expect = 9.190e-27
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 ATMGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSRD 291
            AT G+ L  +A ++L   G+N+   + ++G++GIGF+   V +A+L L+LDF FIE+G+  RAPKYMEW GA+GLMVTLVWLYIE LRLLAKLQSRD
Sbjct:  159 ATGGIFLVYLATLVLGLFGVNVPYIH-ESGLIGIGFSLFVVVIAALNLVLDFDFIESGVQARAPKYMEWYGAFGLMVTLVWLYIEFLRLLAKLQSRD 254
[Close]
BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: A0A539EF61_9BACT (Uncharacterized protein n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A539EF61_9BACT)

HSP 1 Score: 102 bits (253), Expect = 3.610e-26
Identity = 55/96 (57.29%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:    1 ATMGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSR 288
            AT GL+L  +  M+L F G+ +   + + G++GIGF+   VGLAS  L++DF FIE G  + APKYMEW GA+GL+VTLVWLYIE+LRLL+KLQSR
Sbjct:    8 ATGGLMLMYLFNMVLGFFGVRIPYIH-ENGVVGIGFSLFVVGLASFNLVMDFDFIERGADSDAPKYMEWYGAFGLVVTLVWLYIEMLRLLSKLQSR 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: A0A328RIY5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinamargulisbacteria bacterium SCGC AG-410-N11 TaxID=2184345 RepID=A0A328RIY5_9BACT)

HSP 1 Score: 105 bits (263), Expect = 4.030e-26
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 ATMGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSRD 291
            AT+GL+ +     +L   G N ++    +GI+GIGF+  CVGLASL L+LDF FI+      APKYMEW GA+GL+VTL+WLYIE++RLL+KL+S D
Sbjct:  147 ATLGLMGFYFISFILSLFGFNPFSSMFGSGIIGIGFSLFCVGLASLNLVLDFDFIKTVAQKGAPKYMEWYGAFGLLVTLIWLYIEIIRLLSKLRSND 243
[Close]
BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: A0A0A0ENB1_9GAMM (Membrane protein n=2 Tax=Lysobacter TaxID=68 RepID=A0A0A0ENB1_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 4.690e-26
Identity = 57/96 (59.38%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 ATMGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSR 288
            AT G+ L  +A M+L F GIN+   + ++G++GIGF+ + V +A+L L+LDF FIE G+   APKYMEW GA+GLMVTLVWLYIE LRLL+KLQSR
Sbjct:  156 ATGGVFLVYMASMVLGFFGINIPMIH-ESGLLGIGFSLVVVVIAALNLVLDFDFIETGVEQGAPKYMEWYGAFGLMVTLVWLYIEFLRLLSKLQSR 250
[Close]
BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Match: A0A2M9DZP2_9GAMM (Uncharacterized protein n=1 Tax=Xanthomonadaceae bacterium NML03-0222 TaxID=2032581 RepID=A0A2M9DZP2_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 5.000e-26
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 ATMGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDFQFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSRD 291
            AT G+ L  +A ++L F  IN+   + ++G++GIGF+   V +A+L L+LDF FIE G+   APKYMEW GA+GLMVTLVWLY+E LRLLAKLQSRD
Sbjct:  158 ATGGIALIYLATIVLGFFNINIPYIH-ESGLIGIGFSLFVVVIAALNLVLDFDFIETGVEQGAPKYMEWYGAFGLMVTLVWLYVEFLRLLAKLQSRD 253
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124492.4986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812XZX5_9DINO1.470e-4876.29Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A3D4UL64_9BACT3.620e-4473.20Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A3M2C9V0_9BACT6.470e-4166.67Bax inhibitor-1/YccA family protein n=1 Tax=Planct... [more]
A0A7D8UHB8_9BACT4.340e-2761.05Bax inhibitor-1/YccA family protein n=1 Tax=Phycis... [more]
A0A7V8GP08_9GAMM8.620e-2758.76Uncharacterized protein n=2 Tax=Pseudoxanthomonas ... [more]
UPI001782DFBF9.190e-2758.76Bax inhibitor-1/YccA family protein n=1 Tax=Xantho... [more]
A0A539EF61_9BACT3.610e-2657.29Uncharacterized protein n=1 Tax=Elusimicrobia bact... [more]
A0A328RIY5_9BACT4.030e-2653.61Uncharacterized protein n=1 Tax=Candidatus Marinam... [more]
A0A0A0ENB1_9GAMM4.690e-2659.38Membrane protein n=2 Tax=Lysobacter TaxID=68 RepID... [more]
A0A2M9DZP2_9GAMM5.000e-2657.73Uncharacterized protein n=1 Tax=Xanthomonadaceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124492contigM-pyrifera_M_contig124492:2..295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score103.6
Seed ortholog evalue5.2e-20
Seed eggNOG ortholog1385517.N800_14175
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Inhibitor of apoptosis-promoting Bax1
EggNOG OGs1REUF@1224,1T1EH@1236,1XD49@135614,COG4760@1,COG4760@2
COG Functional cat.S
Best tax levelXanthomonadales
Best eggNOG OGNA|NA|NA
Exons1
Model size294
Cds size288
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.4690137-UTR-M-pyrifera_M_contig124492:1..71622815762.4690137-UTR-M-pyrifera_M_contig124492:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124492 2..7 +
1692277557.6441054-UTR-M-pyrifera_M_contig124492:1..71692277557.6441054-UTR-M-pyrifera_M_contig124492:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124492 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.4867163-CDS-M-pyrifera_M_contig124492:7..2951622815762.4867163-CDS-M-pyrifera_M_contig124492:7..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124492 8..295 +
1692277557.6582875-CDS-M-pyrifera_M_contig124492:7..2951692277557.6582875-CDS-M-pyrifera_M_contig124492:7..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124492 8..295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124492.4986.1prot_M-pyrifera_M_contig124492.4986.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124492 8..295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124492.4986.1

>prot_M-pyrifera_M_contig124492.4986.1 ID=prot_M-pyrifera_M_contig124492.4986.1|Name=mRNA_M-pyrifera_M_contig124492.4986.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MGLVLYTVALMLLRFVGINLWNGYADTGIMGIGFTGLCVGLASLFLLLDF
QFIEAGIANRAPKYMEWVGAWGLMVTLVWLYIEVLRLLAKLQSRD*
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mRNA from alignment at M-pyrifera_M_contig124492:2..295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124492.4986.1 ID=mRNA_M-pyrifera_M_contig124492.4986.1|Name=mRNA_M-pyrifera_M_contig124492.4986.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig124492:2..295+ (Macrocystis pyrifera P11B4 male)
GCAACGATGGGGCTCGTGCTGTACACAGTCGCACTGATGCTGCTCCGCTT
CGTCGGCATCAACTTGTGGAACGGCTACGCCGACACAGGGATCATGGGAA
TCGGATTCACAGGATTATGTGTAGGGCTCGCGTCGCTGTTTCTGCTGCTT
GATTTCCAGTTCATCGAAGCAGGGATCGCGAATCGTGCGCCCAAATACAT
GGAATGGGTCGGCGCATGGGGACTGATGGTCACGCTCGTGTGGCTCTACA
TCGAAGTTCTGCGCCTGCTCGCGAAACTCCAGTCGCGCGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124492:2..295+

>mRNA_M-pyrifera_M_contig124492.4986.1 ID=mRNA_M-pyrifera_M_contig124492.4986.1|Name=mRNA_M-pyrifera_M_contig124492.4986.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig124492:2..295+ (Macrocystis pyrifera P11B4 male)
ATGGGGCTCGTGCTGTACACAGTCGCACTGATGCTGCTCCGCTTCGTCGG
CATCAACTTGTGGAACGGCTACGCCGACACAGGGATCATGGGAATCGGAT
TCACAGGATTATGTGTAGGGCTCGCGTCGCTGTTTCTGCTGCTTGATTTC
CAGTTCATCGAAGCAGGGATCGCGAATCGTGCGCCCAAATACATGGAATG
GGTCGGCGCATGGGGACTGATGGTCACGCTCGTGTGGCTCTACATCGAAG
TTCTGCGCCTGCTCGCGAAACTCCAGTCGCGCGACTGAATGGGGCTCGTG
CTGTACACAGTCGCACTGATGCTGCTCCGCTTCGTCGGCATCAACTTGTG
GAACGGCTACGCCGACACAGGGATCATGGGAATCGGATTCACAGGATTAT
GTGTAGGGCTCGCGTCGCTGTTTCTGCTGCTTGATTTCCAGTTCATCGAA
GCAGGGATCGCGAATCGTGCGCCCAAATACATGGAATGGGTCGGCGCATG
GGGACTGATGGTCACGCTCGTGTGGCTCTACATCGAAGTTCTGCGCCTGC
TCGCGAAACTCCAGTCGCGCGACTGA
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