mRNA_M-pyrifera_M_contig124487.4984.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124487.4984.1
Unique NamemRNA_M-pyrifera_M_contig124487.4984.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: A0A060X6N2_ONCMY (L-lactate dehydrogenase n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A060X6N2_ONCMY)

HSP 1 Score: 172 bits (435), Expect = 9.200e-51
Identity = 82/150 (54.67%), Postives = 113/150 (75.33%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAELDM 462
            SS HG+IIGEHGDS+VPVWSG++V GV L+ LNP+MG ++D E W  V K  +  A  VI  KGYT+ AIGL+   +  +IL+N H +HPVSTLV+G+HG++++VFLSVPCVLG+SG+   + + L+P+EE+QL +SAET+   Q EL +
Sbjct:  106 SSCHGWIIGEHGDSSVPVWSGVNVAGVSLKGLNPDMGTDADKEDWKHVHKMVVNGAYEVIKLKGYTSWAIGLSVADLVESILKNLHKVHPVSTLVKGMHGVKEEVFLSVPCVLGNSGLTDIIHMTLKPEEEKQLINSAETLWGVQKELTL 255
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: A0A437DB99_ORYJA (L-lactate dehydrogenase n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A437DB99_ORYJA)

HSP 1 Score: 174 bits (440), Expect = 2.360e-50
Identity = 83/150 (55.33%), Postives = 111/150 (74.00%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAELDM 462
            SS HG+IIGEHGDS+V VWSG++V GV L+ LNP+MG E D EHW EV K  +  A  VI  KGYT+ AIG++   +  ++++N H +HPVSTLVQGLHG++ +VFLSVPCVLGSSG+   + + L+P+EE+QL  SA+T+   Q EL +
Sbjct:  206 SSCHGWIIGEHGDSSVAVWSGVNVAGVSLQKLNPKMGAEDDGEHWKEVHKKVVDGAYEVIRLKGYTSWAIGMSVADLVESVMKNLHRVHPVSTLVQGLHGVKDEVFLSVPCVLGSSGLTDVVHMTLKPEEEQQLMKSADTLWGVQKELTL 355
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: A0A3B3ZRX0_9GOBI (L-lactate dehydrogenase n=2 Tax=Gobiidae TaxID=8220 RepID=A0A3B3ZRX0_9GOBI)

HSP 1 Score: 172 bits (437), Expect = 3.730e-50
Identity = 84/150 (56.00%), Postives = 111/150 (74.00%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAELDM 462
            SS HG+IIGEHGDS+VPVWSG++V GV L++LNP MG ESD E+W EV    +  A  VI  KGYT+ AIGL+   +  +I++N H + PVSTLVQG+HG+ ++VFLSVPCVLG+SG+   + + L+P EE+QLR SAET+   Q EL +
Sbjct:  183 SSCHGWIIGEHGDSSVPVWSGVNVAGVSLQALNPNMGGESDSENWKEVHHQVVQGAYEVIKLKGYTSWAIGLSVADLVESIMKNLHKVQPVSTLVQGMHGVNEEVFLSVPCVLGNSGLTDVINMTLKPDEEQQLRKSAETLWGVQKELTL 332
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: A0A674CGG9_SALTR (L-lactate dehydrogenase n=8 Tax=Salmoninae TaxID=504568 RepID=A0A674CGG9_SALTR)

HSP 1 Score: 172 bits (435), Expect = 3.770e-50
Identity = 81/150 (54.00%), Postives = 113/150 (75.33%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAELDM 462
            SS HG+IIGEHGDS+VPVWSG++V GV L+ LNP+MG ++D E W  V K  +  A  VI  KGYT+ AIG++   +  +IL+N H +HPVSTLV+G+HG++++VFLSVPCVLG+SG+   + + L+P+EE+QL +SAET+   Q EL +
Sbjct:  157 SSCHGWIIGEHGDSSVPVWSGVNVAGVSLKGLNPDMGTDADKEDWKHVHKMVVDGAYEVIKLKGYTSWAIGMSVADLVESILKNLHKVHPVSTLVKGMHGVKEEVFLSVPCVLGNSGLTDVIHMTLKPEEEKQLSNSAETLWGVQKELTL 306
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: A0A6F8ZQH7_9TELE (L-lactate dehydrogenase n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F8ZQH7_9TELE)

HSP 1 Score: 170 bits (431), Expect = 6.310e-50
Identity = 81/150 (54.00%), Postives = 112/150 (74.67%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAELDM 462
            SS HG+IIGEHGDS+VPVWSG++V GV L+ LNP+MG ++D E W  V K  +  A  VI  KGYT+ AIG++   +  +IL+N H +HPVSTLV+G+HG++ +VFLSVPCVLG+SG+   + + L+P+EE+QL +SAET+   Q EL +
Sbjct:  125 SSCHGWIIGEHGDSSVPVWSGVNVAGVSLKGLNPDMGTDADKEDWKHVHKMVVDGAYEVIKLKGYTSWAIGMSVADLVESILKNLHKVHPVSTLVKGMHGVKDEVFLSVPCVLGNSGLTDVIHMTLKPEEEKQLINSAETLWGVQKELTL 274
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: A0A3P9LYZ5_ORYLA (L-lactate dehydrogenase n=3 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9LYZ5_ORYLA)

HSP 1 Score: 171 bits (432), Expect = 2.040e-49
Identity = 84/148 (56.76%), Postives = 108/148 (72.97%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAEL 456
            SS HG+IIGEHGDS+V VWSG++V GV L+ LNP+MG E D E W +V K  +  A  VI  KGYT+ AIG++   +  ++LRN H +HPVSTLVQGLHG++ +VFLSVPCVLGS G+   + + L+ +EEEQLR SAET+   Q EL
Sbjct:  182 SSCHGWIIGEHGDSSVAVWSGVNVAGVSLQKLNPKMGAEDDGERWKDVHKKVVDGAYEVIRLKGYTSWAIGMSVADLVESLLRNLHRVHPVSTLVQGLHGVKDEVFLSVPCVLGSGGLTDVVHMTLKAEEEEQLRKSAETLWGVQKEL 329
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: A0A4W5PEA0_9TELE (L-lactate dehydrogenase n=2 Tax=Salmoninae TaxID=504568 RepID=A0A4W5PEA0_9TELE)

HSP 1 Score: 171 bits (432), Expect = 2.320e-49
Identity = 81/150 (54.00%), Postives = 113/150 (75.33%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAELDM 462
            SS HG+IIGEHGDS+VPVWSG++V GV L+ LNP+MG ++D E W  V K  +  A  VI  KGYT+ AIG++   +  +IL+N H +HPVSTLV+G+HG++++VFLSVPCVLG+SG+   + + L+P+EE+QL +SAET+   Q EL +
Sbjct:  187 SSCHGWIIGEHGDSSVPVWSGVNVAGVSLKGLNPDMGTDADKEDWKHVHKMVVDGAYEVIKLKGYTSWAIGMSVADLVESILKNLHKVHPVSTLVKGMHGVKEEVFLSVPCVLGNSGLTDIIHMTLKPEEEKQLSNSAETLWAVQKELTL 336
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: W5MBG2_LEPOC (L-lactate dehydrogenase n=3 Tax=Lepisosteidae TaxID=7915 RepID=W5MBG2_LEPOC)

HSP 1 Score: 171 bits (432), Expect = 2.320e-49
Identity = 82/148 (55.41%), Postives = 112/148 (75.68%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAEL 456
            SSVHGYI+GEHGDS+VPVWSG +V G+ L+SLNP++  + DPE W E+ K  + +A  VI  KGYT+ AIGL+  ++ N++L+N  T++P+STLV+G+HGI+++VFLSVPCVLGSSGV   L   L+  E  QL+ SAET+ N Q +L
Sbjct:  184 SSVHGYIVGEHGDSSVPVWSGTNVAGISLQSLNPQLESDQDPEGWKEIHKKVVDSAYEVIKLKGYTSWAIGLSVASLANSVLKNLKTVNPISTLVKGMHGIKEEVFLSVPCVLGSSGVCGVLKQPLKETETRQLQHSAETLWNVQKDL 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: A0A5C0ZU02_MICSA (L-lactate dehydrogenase (Fragment) n=8 Tax=Percomorphaceae TaxID=1489872 RepID=A0A5C0ZU02_MICSA)

HSP 1 Score: 169 bits (429), Expect = 2.570e-49
Identity = 81/150 (54.00%), Postives = 111/150 (74.00%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAELDM 462
            SS HG+IIGEHGDS+VPVWSG++V GV L+SLNP+MG E D E W EV K  +  A  VI  KGYT+ AIG++   +  +IL+N H +HPVSTLVQG+HG++ +VFLS+PCVLG++G+   + + L+ +E++QL  SAET+   Q EL +
Sbjct:  151 SSCHGWIIGEHGDSSVPVWSGVNVAGVSLQSLNPQMGAEGDSEKWKEVHKMVVDGAYEVIKLKGYTSWAIGMSVADLVESILKNLHKVHPVSTLVQGMHGVKDEVFLSIPCVLGNNGLTDVIHMTLKDEEQKQLVKSAETLWGVQKELTL 300
[Close]
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Match: A0A3Q3WYZ4_MOLML (L-lactate dehydrogenase n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3WYZ4_MOLML)

HSP 1 Score: 171 bits (432), Expect = 3.450e-49
Identity = 82/148 (55.41%), Postives = 112/148 (75.68%), Query Frame = 1 
Query:   13 SSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWGEVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQGLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQAEL 456
            SS HG+IIGEHGDS+VPVWSG++V GV L++LNP+MG E D E+W EV K  +  A  VI  KGYT+ AIG++   +  +I++N H +HPVSTLVQGLHG++++VFLS+P VLG+SG+   + + L+P+EE+QL  SAET+   Q EL
Sbjct:  203 SSCHGWIIGEHGDSSVPVWSGMNVAGVSLQALNPKMGAEGDSENWKEVHKKVVDGAYEVIKLKGYTSWAIGMSVADLVESIMKNLHKVHPVSTLVQGLHGVKEEVFLSIPSVLGNSGLTDIIHVMLKPEEEKQLMKSAETLWGVQKEL 350
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124487.4984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A060X6N2_ONCMY9.200e-5154.67L-lactate dehydrogenase n=2 Tax=Oncorhynchus TaxID... [more]
A0A437DB99_ORYJA2.360e-5055.33L-lactate dehydrogenase n=1 Tax=Oryzias javanicus ... [more]
A0A3B3ZRX0_9GOBI3.730e-5056.00L-lactate dehydrogenase n=2 Tax=Gobiidae TaxID=822... [more]
A0A674CGG9_SALTR3.770e-5054.00L-lactate dehydrogenase n=8 Tax=Salmoninae TaxID=5... [more]
A0A6F8ZQH7_9TELE6.310e-5054.00L-lactate dehydrogenase n=1 Tax=Coregonus sp. 'bal... [more]
A0A3P9LYZ5_ORYLA2.040e-4956.76L-lactate dehydrogenase n=3 Tax=Oryzias latipes Ta... [more]
A0A4W5PEA0_9TELE2.320e-4954.00L-lactate dehydrogenase n=2 Tax=Salmoninae TaxID=5... [more]
W5MBG2_LEPOC2.320e-4955.41L-lactate dehydrogenase n=3 Tax=Lepisosteidae TaxI... [more]
A0A5C0ZU02_MICSA2.570e-4954.00L-lactate dehydrogenase (Fragment) n=8 Tax=Percomo... [more]
A0A3Q3WYZ4_MOLML3.450e-4955.41L-lactate dehydrogenase n=4 Tax=Percomorphaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124487contigM-pyrifera_M_contig124487:26..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score173.3
Seed ortholog evalue9.1e-41
Seed eggNOG ortholog106582.XP_004563446.1
Preferred nameLDHA
KEGG rclassRC00031,RC00044
KEGG koko:K00016
KEGG ReactionR00703,R01000,R03104
KEGG Pathwayko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000302,GO:0000768,GO:0001666,GO:0003674,GO:0003824,GO:0004457,GO:0004459,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005929,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006096,GO:0006113,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006949,GO:0006950,GO:0006979,GO:0007154,GO:0007275,GO:0007520,GO:0007525,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0014902,GO:0015980,GO:0016052,GO:0016053,GO:0016310,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0019244,GO:0019249,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019752,GO:0019899,GO:0019900,GO:0030154,GO:0031514,GO:0031667,GO:0031668,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0034284,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035686,GO:0036094,GO:0036126,GO:0036293,GO:0042221,GO:0042493,GO:0042542,GO:0042692,GO:0042802,GO:0042866,GO:0042981,GO:0042995,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043627,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0046031,GO:0046034,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046939,GO:0048037,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051146,GO:0051186,GO:0051188,GO:0051287,GO:0051591,GO:0051716,GO:0055086,GO:0055114,GO:0061061,GO:0065007,GO:0070013,GO:0070482,GO:0071496,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097223,GO:0097729,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901698,GO:1901700
EggNOG free text desc.Belongs to the LDH MDH superfamily
EggNOG OGs38G9C@33154,3BGT7@33208,3CW73@33213,484IM@7711,48Z2N@7742,49U61@7898,COG0039@1,KOG1495@2759
EC1.1.1.27
COG Functional cat.C
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons1
Model size489
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.3224163-CDS-M-pyrifera_M_contig124487:25..5141622815762.3224163-CDS-M-pyrifera_M_contig124487:25..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124487 26..514 -
1692277557.5189013-CDS-M-pyrifera_M_contig124487:25..5141692277557.5189013-CDS-M-pyrifera_M_contig124487:25..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124487 26..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124487.4984.1prot_M-pyrifera_M_contig124487.4984.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124487 26..514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124487.4984.1

>prot_M-pyrifera_M_contig124487.4984.1 ID=prot_M-pyrifera_M_contig124487.4984.1|Name=mRNA_M-pyrifera_M_contig124487.4984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
GVATSSVHGYIIGEHGDSAVPVWSGLSVGGVRLRSLNPEMGKESDPEHWG
EVAKATIGAAQTVIAAKGYTNLAIGLTACAITNAILRNAHTIHPVSTLVQ
GLHGIEQQVFLSVPCVLGSSGVKSALALELEPQEEEQLRSSAETIHNAQA
ELDMPEEGGSAE*
back to top

mRNA from alignment at M-pyrifera_M_contig124487:26..514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124487.4984.1 ID=mRNA_M-pyrifera_M_contig124487.4984.1|Name=mRNA_M-pyrifera_M_contig124487.4984.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig124487:26..514- (Macrocystis pyrifera P11B4 male)
GGCGTGGCGACGTCGAGTGTGCACGGGTACATTATCGGAGAACACGGAGA
CAGCGCAGTGCCAGTGTGGTCGGGTCTGAGCGTGGGAGGGGTGAGACTGC
GATCGCTCAACCCCGAAATGGGAAAAGAATCCGATCCAGAACACTGGGGT
GAAGTGGCCAAGGCCACCATTGGAGCTGCACAGACCGTGATCGCCGCAAA
AGGATACACCAATCTCGCCATTGGGCTCACCGCCTGCGCCATCACCAACG
CCATCCTCCGTAACGCTCACACCATCCACCCGGTCTCCACACTCGTCCAA
GGGCTCCACGGCATCGAGCAGCAAGTCTTCCTCTCCGTGCCATGCGTCCT
CGGATCCTCAGGGGTCAAATCCGCTCTCGCTCTTGAACTAGAGCCGCAGG
AGGAAGAACAGCTCAGATCGTCCGCGGAAACCATCCACAACGCACAAGCA
GAACTCGATATGCCCGAAGAAGGGGGGAGTGCGGAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig124487:26..514-

>mRNA_M-pyrifera_M_contig124487.4984.1 ID=mRNA_M-pyrifera_M_contig124487.4984.1|Name=mRNA_M-pyrifera_M_contig124487.4984.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig124487:26..514- (Macrocystis pyrifera P11B4 male)
GGCGTGGCGACGTCGAGTGTGCACGGGTACATTATCGGAGAACACGGAGA
CAGCGCAGTGCCAGTGTGGTCGGGTCTGAGCGTGGGAGGGGTGAGACTGC
GATCGCTCAACCCCGAAATGGGAAAAGAATCCGATCCAGAACACTGGGGT
GAAGTGGCCAAGGCCACCATTGGAGCTGCACAGACCGTGATCGCCGCAAA
AGGATACACCAATCTCGCCATTGGGCTCACCGCCTGCGCCATCACCAACG
CCATCCTCCGTAACGCTCACACCATCCACCCGGTCTCCACACTCGTCCAA
GGGCTCCACGGCATCGAGCAGCAAGTCTTCCTCTCCGTGCCATGCGTCCT
CGGATCCTCAGGGGTCAAATCCGCTCTCGCTCTTGAACTAGAGCCGCAGG
AGGAAGAACAGCTCAGATCGTCCGCGGAAACCATCCACAACGCACAAGCA
GAACTCGATATGCCCGAAGAAGGGGGGAGTGCGGAGTAGGGCGTGGCGAC
GTCGAGTGTGCACGGGTACATTATCGGAGAACACGGAGACAGCGCAGTGC
CAGTGTGGTCGGGTCTGAGCGTGGGAGGGGTGAGACTGCGATCGCTCAAC
CCCGAAATGGGAAAAGAATCCGATCCAGAACACTGGGGTGAAGTGGCCAA
GGCCACCATTGGAGCTGCACAGACCGTGATCGCCGCAAAAGGATACACCA
ATCTCGCCATTGGGCTCACCGCCTGCGCCATCACCAACGCCATCCTCCGT
AACGCTCACACCATCCACCCGGTCTCCACACTCGTCCAAGGGCTCCACGG
CATCGAGCAGCAAGTCTTCCTCTCCGTGCCATGCGTCCTCGGATCCTCAG
GGGTCAAATCCGCTCTCGCTCTTGAACTAGAGCCGCAGGAGGAAGAACAG
CTCAGATCGTCCGCGGAAACCATCCACAACGCACAAGCAGAACTCGATAT
GCCCGAAGAAGGGGGGAGTGCGGAGTAG
back to top