mRNA_M-pyrifera_M_contig124476.4982.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124476.4982.1
Unique NamemRNA_M-pyrifera_M_contig124476.4982.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124476.4982.1 vs. uniprot
Match: A0A7X6ARC1_9ACTN (SRPBCC family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ARC1_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 1.260e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 GPGSSGLTWAIDNDPDNESAIIRDRQASHRTNMTRCIEGIKELAEAA 141
            GPG SGLT AI +DP NE  IIR RQ +H  NMTRC+EGI+ LAE+A
Sbjct:   74 GPGPSGLTRAIADDPGNEMRIIRARQRTHAANMTRCLEGIRGLAESA 120
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BLAST of mRNA_M-pyrifera_M_contig124476.4982.1 vs. uniprot
Match: A0A7K2BE80_9ACTN (Nitroreductase domain-containing protein n=5 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7K2BE80_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 4.960e-8
Identity = 28/45 (62.22%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 GPGSSGLTWAIDNDPDNESAIIRDRQASHRTNMTRCIEGIKELAE 135
            GPG SGLT AI   PD E  I+  RQ  H  NMTRC+EGIK LAE
Sbjct:  414 GPGESGLTMAITAMPDKEPRILSRRQDEHLANMTRCVEGIKALAE 458
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BLAST of mRNA_M-pyrifera_M_contig124476.4982.1 vs. uniprot
Match: A0A381UNS4_9ZZZZ (Nitroreductase domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381UNS4_9ZZZZ)

HSP 1 Score: 56.2 bits (134), Expect = 6.750e-8
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 GPGSSGLTWAIDNDPDNESAIIRDRQASHRTNMTRCIEGIKELAEAA 141
            GPG+SGLT AID  PD E+AII +RQ     NM R  EGI++LAEAA
Sbjct:  348 GPGTSGLTLAIDAMPDKEAAIIANRQKGQIANMRRTAEGIRDLAEAA 394
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BLAST of mRNA_M-pyrifera_M_contig124476.4982.1 vs. uniprot
Match: A0A2E7SK76_9ACTN (Nitroreductase domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7SK76_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 3.230e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 GPGSSGLTWAIDNDPDNESAIIRDRQASHRTNMTRCIEGIKELAE 135
            GPGSSGLT AI+  PD E  I+ +RQ +   NM + +EGIKELAE
Sbjct:  334 GPGSSGLTRAIEQSPDLEKXIVSNRQKTQXVNMRKTVEGIKELAE 378
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BLAST of mRNA_M-pyrifera_M_contig124476.4982.1 vs. uniprot
Match: A0A346XWD1_9ACTN (Cyclase/dehydrase n=1 Tax=Euzebya pacifica TaxID=1608957 RepID=A0A346XWD1_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 4.990e-6
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 GPGSSGLTWAIDNDPDNESAIIRDRQASHRTNMTRCIEGIKELAEAA 141
            GPG SGLTWAI  +PD E AII  R A  R +MT+ +E ++  A AA
Sbjct:  120 GPGRSGLTWAIRQNPDQEEAIIERRLADFRDSMTQNLEEVERRATAA 166
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BLAST of mRNA_M-pyrifera_M_contig124476.4982.1 vs. uniprot
Match: A0A538JI31_9ACTN (Nitroreductase domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JI31_9ACTN)

HSP 1 Score: 47.4 bits (111), Expect = 9.140e-5
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 GPGSSGLTWAIDNDPDNESAIIRDRQASHRTNMTRCIEGIKELAEAAR 144
            GPG SG T AI N+P  E  ++R R    + NM + ++G+K+LAE AR
Sbjct:  334 GPGPSGTTMAITNNPGKEVRVLRRRIGEVQANMQQTVDGVKQLAEEAR 381
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124476.4982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7X6ARC1_9ACTN1.260e-1165.96SRPBCC family protein n=1 Tax=Actinomycetia bacter... [more]
A0A7K2BE80_9ACTN4.960e-862.22Nitroreductase domain-containing protein n=5 Tax=A... [more]
A0A381UNS4_9ZZZZ6.750e-861.70Nitroreductase domain-containing protein (Fragment... [more]
A0A2E7SK76_9ACTN3.230e-757.78Nitroreductase domain-containing protein n=1 Tax=A... [more]
A0A346XWD1_9ACTN4.990e-653.19Cyclase/dehydrase n=1 Tax=Euzebya pacifica TaxID=1... [more]
A0A538JI31_9ACTN9.140e-545.83Nitroreductase domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124476contigM-pyrifera_M_contig124476:368..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.256544-CDS-M-pyrifera_M_contig124476:367..5171622815762.256544-CDS-M-pyrifera_M_contig124476:367..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124476 368..517 -
1692277557.4940174-CDS-M-pyrifera_M_contig124476:367..5171692277557.4940174-CDS-M-pyrifera_M_contig124476:367..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124476 368..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124476.4982.1prot_M-pyrifera_M_contig124476.4982.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124476 368..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124476.4982.1

>prot_M-pyrifera_M_contig124476.4982.1 ID=prot_M-pyrifera_M_contig124476.4982.1|Name=mRNA_M-pyrifera_M_contig124476.4982.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
GPGSSGLTWAIDNDPDNESAIIRDRQASHRTNMTRCIEGIKELAEAART*
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mRNA from alignment at M-pyrifera_M_contig124476:368..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124476.4982.1 ID=mRNA_M-pyrifera_M_contig124476.4982.1|Name=mRNA_M-pyrifera_M_contig124476.4982.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig124476:368..517- (Macrocystis pyrifera P11B4 male)
GGCCCGGGCTCGTCCGGACTCACCTGGGCGATCGACAACGATCCCGACAA
CGAGTCGGCGATCATTCGCGACCGTCAGGCCAGCCATCGCACCAACATGA
CCCGCTGCATCGAAGGCATCAAGGAACTGGCCGAGGCTGCACGCACCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124476:368..517-

>mRNA_M-pyrifera_M_contig124476.4982.1 ID=mRNA_M-pyrifera_M_contig124476.4982.1|Name=mRNA_M-pyrifera_M_contig124476.4982.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig124476:368..517- (Macrocystis pyrifera P11B4 male)
GGCCCGGGCTCGTCCGGACTCACCTGGGCGATCGACAACGATCCCGACAA
CGAGTCGGCGATCATTCGCGACCGTCAGGCCAGCCATCGCACCAACATGA
CCCGCTGCATCGAAGGCATCAAGGAACTGGCCGAGGCTGCACGCACCTGA
GGCCCGGGCTCGTCCGGACTCACCTGGGCGATCGACAACGATCCCGACAA
CGAGTCGGCGATCATTCGCGACCGTCAGGCCAGCCATCGCACCAACATGA
CCCGCTGCATCGAAGGCATCAAGGAACTGGCCGAGGCTGCACGCACCTGA
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