mRNA_M-pyrifera_M_contig124474.4981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124474.4981.1
Unique NamemRNA_M-pyrifera_M_contig124474.4981.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: UPI001AE033A2 (ribonuclease HII n=1 Tax=Sagittula salina TaxID=2820268 RepID=UPI001AE033A2)

HSP 1 Score: 58.2 bits (139), Expect = 5.630e-9
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDREAV 138
            + +EE +W RGV RVCG DE GRGPLAGPVVAA+V + +RE++
Sbjct:    3 MTFEEALWGRGVGRVCGVDEVGRGPLAGPVVAAAVVL-NRESI 44          
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A849XZ74_9BACT (Ribonuclease HII n=1 Tax=Verrucomicrobiae bacterium TaxID=2499141 RepID=A0A849XZ74_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 6.850e-9
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    4 SGLAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCI 120
            + L +E  +WARG ARVCG DEAGRGPLAGPVVAA+V +
Sbjct:    9 ASLDFERDLWARGFARVCGIDEAGRGPLAGPVVAAAVVL 47          
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A7X4AD53_9BACT (Ribonuclease HII n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4AD53_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.200e-8
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDREAV 138
            L YE  +WARGVARV G DE GRGPLAGPVVAA+V + +  A+
Sbjct:    2 LDYERDLWARGVARVAGVDEVGRGPLAGPVVAAAVILAEGVAI 44          
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A4Y8IAY4_9BACT (Multifunctional fusion protein n=1 Tax=Candidatus Marinimicrobia bacterium MT.SAG.4 TaxID=2552981 RepID=A0A4Y8IAY4_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 4.510e-8
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDR 129
            L YE R+WA G+ R+ G DEAGRGPLAGPVVAA+V ++ +
Sbjct:    7 LYYENRLWASGIKRIAGIDEAGRGPLAGPVVAAAVILDQQ 46          
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A849GU62_9BACT (Ribonuclease HII n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A849GU62_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 4.690e-8
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCI 120
            L YEER W+RG + V G DEAGRGPLAGPVVAA+V +
Sbjct:   11 LEYEERFWSRGFSHVAGVDEAGRGPLAGPVVAAAVLL 47          
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A651HR67_9BACT (Ribonuclease HII n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A651HR67_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 4.690e-8
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1
Query:    7 GLAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIE 123
            GL YEE  W RG+  V G DE GRGPLAGPVVAA+V +E
Sbjct:    5 GLEYEEAFWRRGITLVAGVDEVGRGPLAGPVVAAAVVLE 43          
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A6N8V659_9BACT (Ribonuclease HII n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V659_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 5.360e-8
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIED 126
            L YE  +W RG+ARV G DE GRGPLAGPVVAA+V + +
Sbjct:   18 LEYERHLWGRGIARVAGVDEVGRGPLAGPVVAAAVVLAE 56          
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A848XKG9_9BACT (Ribonuclease (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A848XKG9_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.180e-8
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCI 120
            L YE   W RGV+RV G DE GRGPLAGPVVAA+V +
Sbjct:   10 LEYERGFWGRGVSRVAGVDEVGRGPLAGPVVAAAVIL 46          
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A0F2NEN6_9FIRM (Ribonuclease HII n=1 Tax=Peptococcaceae bacterium BRH_c4a TaxID=1629716 RepID=A0A0F2NEN6_9FIRM)

HSP 1 Score: 55.8 bits (133), Expect = 7.100e-8
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDR 129
            L YE+R+WA GV  V G DEAGRGPLAGPVVAA+V +  R
Sbjct:   60 LCYEKRLWASGVELVAGVDEAGRGPLAGPVVAAAVILPPR 99          
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A3M2B9K6_9BACT (Ribonuclease HII n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A3M2B9K6_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 7.260e-8
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIED 126
            L YE R W+RG+ RV G DEAGRGPLAGPVVAA+V + +
Sbjct:   22 LDYERRCWSRGLFRVAGVDEAGRGPLAGPVVAAAVVLPE 60          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AE033A25.630e-962.79ribonuclease HII n=1 Tax=Sagittula salina TaxID=28... [more]
A0A849XZ74_9BACT6.850e-969.23Ribonuclease HII n=1 Tax=Verrucomicrobiae bacteriu... [more]
A0A7X4AD53_9BACT1.200e-865.12Ribonuclease HII n=1 Tax=Gemmatimonadetes bacteriu... [more]
A0A4Y8IAY4_9BACT4.510e-862.50Multifunctional fusion protein n=1 Tax=Candidatus ... [more]
A0A849GU62_9BACT4.690e-870.27Ribonuclease HII n=1 Tax=Gemmatimonadetes bacteriu... [more]
A0A651HR67_9BACT4.690e-866.67Ribonuclease HII n=1 Tax=Gemmatimonadales bacteriu... [more]
A0A6N8V659_9BACT5.360e-864.10Ribonuclease HII n=2 Tax=Gemmatimonadetes bacteriu... [more]
A0A848XKG9_9BACT6.180e-867.57Ribonuclease (Fragment) n=1 Tax=Gemmatimonadetes b... [more]
A0A0F2NEN6_9FIRM7.100e-867.50Ribonuclease HII n=1 Tax=Peptococcaceae bacterium ... [more]
A0A3M2B9K6_9BACT7.260e-866.67Ribonuclease HII n=1 Tax=Gemmatimonadetes bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124474contigM-pyrifera_M_contig124474:3..149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.2141218-CDS-M-pyrifera_M_contig124474:2..1491622815762.2141218-CDS-M-pyrifera_M_contig124474:2..149Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124474 3..149 -
1692277557.484326-CDS-M-pyrifera_M_contig124474:2..1491692277557.484326-CDS-M-pyrifera_M_contig124474:2..149Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124474 3..149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124474.4981.1prot_M-pyrifera_M_contig124474.4981.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124474 3..149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124474.4981.1

>prot_M-pyrifera_M_contig124474.4981.1 ID=prot_M-pyrifera_M_contig124474.4981.1|Name=mRNA_M-pyrifera_M_contig124474.4981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
LSGLAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDREAVLPL
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mRNA from alignment at M-pyrifera_M_contig124474:3..149-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124474.4981.1 ID=mRNA_M-pyrifera_M_contig124474.4981.1|Name=mRNA_M-pyrifera_M_contig124474.4981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig124474:3..149- (Macrocystis pyrifera P11B4 male)
CTTTCTGGGCTGGCGTACGAGGAGAGGGTGTGGGCTCGCGGCGTGGCGCG GGTGTGTGGGTGCGACGAGGCCGGGAGGGGGCCGCTGGCGGGGCCTGTGG TGGCTGCGAGCGTTTGCATCGAAGATCGCGAGGCCGTATTGCCGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124474:3..149-

>mRNA_M-pyrifera_M_contig124474.4981.1 ID=mRNA_M-pyrifera_M_contig124474.4981.1|Name=mRNA_M-pyrifera_M_contig124474.4981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig124474:3..149- (Macrocystis pyrifera P11B4 male)
CTTTCTGGGCTGGCGTACGAGGAGAGGGTGTGGGCTCGCGGCGTGGCGCG
GGTGTGTGGGTGCGACGAGGCCGGGAGGGGGCCGCTGGCGGGGCCTGTGG
TGGCTGCGAGCGTTTGCATCGAAGATCGCGAGGCCGTATTGCCGTTGCTT
TCTGGGCTGGCGTACGAGGAGAGGGTGTGGGCTCGCGGCGTGGCGCGGGT
GTGTGGGTGCGACGAGGCCGGGAGGGGGCCGCTGGCGGGGCCTGTGGTGG
CTGCGAGCGTTTGCATCGAAGATCGCGAGGCCGTATTGCCGTTG
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