mRNA_M-pyrifera_M_contig124459.4975.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124459.4975.1
Unique NamemRNA_M-pyrifera_M_contig124459.4975.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: A0A2F0BL28_ESCRO (Intraflagellar transport protein (Fragment) n=1 Tax=Eschrichtius robustus TaxID=9764 RepID=A0A2F0BL28_ESCRO)

HSP 1 Score: 163 bits (413), Expect = 1.050e-45
Identity = 79/128 (61.72%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:    1 EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            E+ R E L+++A    +QG +HLATK YT AGDR+KAMR LLKSGDTEKI+ FAGVSR +EIY++AAN+LQ+L+W  DP++M++IISFYT+ +A + LA FY ACA VE+++Y+NYDKAH AL EA K
Sbjct:  262 EESRRELLEQIASCCMRQGNYHLATKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWQKDPEIMKSIISFYTKGRALDLLAGFYNACAQVEIDEYQNYDKAHGALTEAYK 389
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BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: A0A8D0M065_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0M065_PIG)

HSP 1 Score: 164 bits (414), Expect = 3.590e-44
Identity = 81/128 (63.28%), Postives = 103/128 (80.47%), Query Frame = 1 
Query:    1 EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            E+ R E L+++A    +QG++HLA K YT AGDR+KAMR LLKSGDTEKI+ FAGVSR +E+YV+AAN+LQ+L+W  DP++M+ IISFYTR +A E LA FY ACA VEV++Y+NYDKAH AL EA K
Sbjct: 1148 EESRRELLEQVASCCMRQGSYHLAAKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEVYVMAANYLQSLDWRRDPEIMKNIISFYTRGRAPELLAGFYDACAQVEVDEYQNYDKAHGALTEAYK 1275
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BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: F1RG13_PIG (Intraflagellar transport 140 n=11 Tax=Suidae TaxID=9821 RepID=F1RG13_PIG)

HSP 1 Score: 164 bits (414), Expect = 3.600e-44
Identity = 81/128 (63.28%), Postives = 103/128 (80.47%), Query Frame = 1 
Query:    1 EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            E+ R E L+++A    +QG++HLA K YT AGDR+KAMR LLKSGDTEKI+ FAGVSR +E+YV+AAN+LQ+L+W  DP++M+ IISFYTR +A E LA FY ACA VEV++Y+NYDKAH AL EA K
Sbjct: 1208 EESRRELLEQVASCCMRQGSYHLAAKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEVYVMAANYLQSLDWRRDPEIMKNIISFYTRGRAPELLAGFYDACAQVEVDEYQNYDKAHGALTEAYK 1335
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BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: A0A4X1W096_PIG (Intraflagellar transport 140 n=11 Tax=Suidae TaxID=9821 RepID=A0A4X1W096_PIG)

HSP 1 Score: 164 bits (414), Expect = 3.610e-44
Identity = 81/128 (63.28%), Postives = 103/128 (80.47%), Query Frame = 1 
Query:    1 EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            E+ R E L+++A    +QG++HLA K YT AGDR+KAMR LLKSGDTEKI+ FAGVSR +E+YV+AAN+LQ+L+W  DP++M+ IISFYTR +A E LA FY ACA VEV++Y+NYDKAH AL EA K
Sbjct: 1175 EESRRELLEQVASCCMRQGSYHLAAKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEVYVMAANYLQSLDWRRDPEIMKNIISFYTRGRAPELLAGFYDACAQVEVDEYQNYDKAHGALTEAYK 1302
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BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: A0A8C9E2I0_PHOSS (Intraflagellar transport 140 n=1 Tax=Phocoena sinus TaxID=42100 RepID=A0A8C9E2I0_PHOSS)

HSP 1 Score: 163 bits (413), Expect = 4.890e-44
Identity = 79/128 (61.72%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:    1 EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            E+ R E L+++A    +QG +HLATK YT AGDR+KAMR LLKSGDTEKI+ FAGVSR +EIY++AAN+LQ+L+W  DP++M++IISFYT+ +A + LA FY ACA VE+++Y+NYDKAH AL EA K
Sbjct: 1063 EESRRELLEQIASCCMRQGNYHLATKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKDPEIMKSIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYK 1190
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BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: A0A8B6ZRU3_ORYAF (LOW QUALITY PROTEIN: intraflagellar transport protein 140 homolog n=1 Tax=Orycteropus afer afer TaxID=1230840 RepID=A0A8B6ZRU3_ORYAF)

HSP 1 Score: 163 bits (413), Expect = 4.900e-44
Identity = 78/125 (62.40%), Postives = 103/125 (82.40%), Query Frame = 1 
Query:   10 RVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            R E L+++A    +QG++HLATK YT AGD++KAMR LLKSGDTEKI+ FAGVSR +E+Y++AAN+LQ+L+W  +PD+MR IISFYT+ +A + LA FYAACA VE+++Y+NYDKAH AL EA K
Sbjct: 1121 RRELLEQIAACCMRQGSYHLATKKYTQAGDKLKAMRALLKSGDTEKIMFFAGVSRQKEVYIMAANYLQSLDWRKEPDIMRGIISFYTKGRALDLLAAFYAACAQVEIDEYQNYDKAHGALTEAYK 1245
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BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: A0A8B8V644_BALMU (intraflagellar transport protein 140 homolog isoform X2 n=1 Tax=Balaenoptera musculus TaxID=9771 RepID=A0A8B8V644_BALMU)

HSP 1 Score: 163 bits (413), Expect = 4.910e-44
Identity = 79/128 (61.72%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:    1 EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            E+ R E L+++A    +QG +HLATK YT AGDR+KAMR LLKSGDTEKI+ FAGVSR +EIY++AAN+LQ+L+W  DP++M++IISFYT+ +A + LA FY ACA VE+++Y+NYDKAH AL EA K
Sbjct: 1165 EESRRELLEQIASCCMRQGNYHLATKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWQKDPEIMKSIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYK 1292
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BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: A0A6J3Q390_TURTR (intraflagellar transport protein 140 homolog isoform X3 n=27 Tax=Odontoceti TaxID=9722 RepID=A0A6J3Q390_TURTR)

HSP 1 Score: 163 bits (413), Expect = 4.910e-44
Identity = 79/128 (61.72%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:    1 EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            E+ R E L+++A    +QG +HLATK YT AGDR+KAMR LLKSGDTEKI+ FAGVSR +EIY++AAN+LQ+L+W  DP++M++IISFYT+ +A + LA FY ACA VE+++Y+NYDKAH AL EA K
Sbjct: 1168 EESRRELLEQIASCCMRQGNYHLATKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKDPEIMKSIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYK 1295
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BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: A0A2Y9Q3M9_DELLE (intraflagellar transport protein 140 homolog isoform X2 n=20 Tax=Cetacea TaxID=9721 RepID=A0A2Y9Q3M9_DELLE)

HSP 1 Score: 163 bits (413), Expect = 4.910e-44
Identity = 79/128 (61.72%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:    1 EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            E+ R E L+++A    +QG +HLATK YT AGDR+KAMR LLKSGDTEKI+ FAGVSR +EIY++AAN+LQ+L+W  DP++M++IISFYT+ +A + LA FY ACA VE+++Y+NYDKAH AL EA K
Sbjct: 1186 EESRRELLEQIASCCMRQGNYHLATKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKDPEIMKSIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYK 1313
[Close]
BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Match: A0A6J3Q2Q8_TURTR (intraflagellar transport protein 140 homolog isoform X2 n=4 Tax=Delphinidae TaxID=9726 RepID=A0A6J3Q2Q8_TURTR)

HSP 1 Score: 163 bits (413), Expect = 4.910e-44
Identity = 79/128 (61.72%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:    1 EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKIIVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLANFYAACADVEVEQYRNYDKAHEALLEARK 384
            E+ R E L+++A    +QG +HLATK YT AGDR+KAMR LLKSGDTEKI+ FAGVSR +EIY++AAN+LQ+L+W  DP++M++IISFYT+ +A + LA FY ACA VE+++Y+NYDKAH AL EA K
Sbjct: 1186 EESRRELLEQIASCCMRQGNYHLATKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKDPEIMKSIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYK 1313
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124459.4975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2F0BL28_ESCRO1.050e-4561.72Intraflagellar transport protein (Fragment) n=1 Ta... [more]
A0A8D0M065_PIG3.590e-4463.28Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
F1RG13_PIG3.600e-4463.28Intraflagellar transport 140 n=11 Tax=Suidae TaxID... [more]
A0A4X1W096_PIG3.610e-4463.28Intraflagellar transport 140 n=11 Tax=Suidae TaxID... [more]
A0A8C9E2I0_PHOSS4.890e-4461.72Intraflagellar transport 140 n=1 Tax=Phocoena sinu... [more]
A0A8B6ZRU3_ORYAF4.900e-4462.40LOW QUALITY PROTEIN: intraflagellar transport prot... [more]
A0A8B8V644_BALMU4.910e-4461.72intraflagellar transport protein 140 homolog isofo... [more]
A0A6J3Q390_TURTR4.910e-4461.72intraflagellar transport protein 140 homolog isofo... [more]
A0A2Y9Q3M9_DELLE4.910e-4461.72intraflagellar transport protein 140 homolog isofo... [more]
A0A6J3Q2Q8_TURTR4.910e-4461.72intraflagellar transport protein 140 homolog isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124459contigM-pyrifera_M_contig124459:26..436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score167.5
Seed ortholog evalue4.2e-39
Seed eggNOG ortholog9823.ENSSSCP00000008565
Preferred nameIFT140
KEGG koko:K19672
Hectar predicted targeting categoryother localisation
GOsGO:0001501,GO:0001654,GO:0001655,GO:0001750,GO:0003002,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0008589,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010646,GO:0010970,GO:0015630,GO:0016043,GO:0021532,GO:0021915,GO:0022008,GO:0022607,GO:0023051,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031076,GO:0031344,GO:0031503,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035721,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0042073,GO:0042461,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048666,GO:0048699,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060041,GO:0060173,GO:0060271,GO:0060429,GO:0060491,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1904888,GO:1905515,GO:1990403
EggNOG free text desc.Intraflagellar transport protein 140 homolog
EggNOG OGs38CRP@33154,3BENH@33208,3CU2T@33213,3J3A1@40674,48B8P@7711,495R0@7742,4IVM3@91561,KOG3617@1,KOG3617@2759
COG Functional cat.S
Best tax levelCetartiodactyla
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.947147-CDS-M-pyrifera_M_contig124459:25..4361622815761.947147-CDS-M-pyrifera_M_contig124459:25..436Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124459 26..436 -
1692277557.3204978-CDS-M-pyrifera_M_contig124459:25..4361692277557.3204978-CDS-M-pyrifera_M_contig124459:25..436Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124459 26..436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124459.4975.1prot_M-pyrifera_M_contig124459.4975.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124459 26..436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124459.4975.1

>prot_M-pyrifera_M_contig124459.4975.1 ID=prot_M-pyrifera_M_contig124459.4975.1|Name=mRNA_M-pyrifera_M_contig124459.4975.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
EKQRVETLQKLARALRKQGAWHLATKAYTAAGDRVKAMRCLLKSGDTEKI
IVFAGVSRDREIYVLAANFLQTLEWHSDPDLMRAIISFYTRAKAKESLAN
FYAACADVEVEQYRNYDKAHEALLEARKQMQDSGAEN
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mRNA from alignment at M-pyrifera_M_contig124459:26..436-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124459.4975.1 ID=mRNA_M-pyrifera_M_contig124459.4975.1|Name=mRNA_M-pyrifera_M_contig124459.4975.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig124459:26..436- (Macrocystis pyrifera P11B4 male)
GAAAAGCAACGTGTGGAAACGCTGCAAAAGCTTGCGCGTGCACTGCGAAA
ACAAGGCGCGTGGCATCTTGCAACCAAAGCGTACACAGCTGCAGGGGATC
GTGTGAAAGCAATGCGTTGCCTTCTCAAGTCTGGAGATACAGAAAAGATT
ATTGTCTTTGCTGGTGTGTCCCGAGATCGTGAAATTTATGTTCTAGCAGC
CAACTTCCTTCAAACTTTGGAATGGCATTCTGACCCAGACCTTATGCGTG
CTATCATCTCCTTCTATACCCGTGCCAAAGCCAAAGAATCGTTGGCAAAC
TTTTATGCCGCTTGTGCTGATGTTGAAGTGGAACAGTACCGAAACTATGA
CAAAGCACATGAAGCTTTGTTGGAAGCACGCAAACAGATGCAAGATTCTG
GTGCCGAGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124459:26..436-

>mRNA_M-pyrifera_M_contig124459.4975.1 ID=mRNA_M-pyrifera_M_contig124459.4975.1|Name=mRNA_M-pyrifera_M_contig124459.4975.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig124459:26..436- (Macrocystis pyrifera P11B4 male)
GAAAAGCAACGTGTGGAAACGCTGCAAAAGCTTGCGCGTGCACTGCGAAA
ACAAGGCGCGTGGCATCTTGCAACCAAAGCGTACACAGCTGCAGGGGATC
GTGTGAAAGCAATGCGTTGCCTTCTCAAGTCTGGAGATACAGAAAAGATT
ATTGTCTTTGCTGGTGTGTCCCGAGATCGTGAAATTTATGTTCTAGCAGC
CAACTTCCTTCAAACTTTGGAATGGCATTCTGACCCAGACCTTATGCGTG
CTATCATCTCCTTCTATACCCGTGCCAAAGCCAAAGAATCGTTGGCAAAC
TTTTATGCCGCTTGTGCTGATGTTGAAGTGGAACAGTACCGAAACTATGA
CAAAGCACATGAAGCTTTGTTGGAAGCACGCAAACAGATGCAAGATTCTG
GTGCCGAGAATGAAAAGCAACGTGTGGAAACGCTGCAAAAGCTTGCGCGT
GCACTGCGAAAACAAGGCGCGTGGCATCTTGCAACCAAAGCGTACACAGC
TGCAGGGGATCGTGTGAAAGCAATGCGTTGCCTTCTCAAGTCTGGAGATA
CAGAAAAGATTATTGTCTTTGCTGGTGTGTCCCGAGATCGTGAAATTTAT
GTTCTAGCAGCCAACTTCCTTCAAACTTTGGAATGGCATTCTGACCCAGA
CCTTATGCGTGCTATCATCTCCTTCTATACCCGTGCCAAAGCCAAAGAAT
CGTTGGCAAACTTTTATGCCGCTTGTGCTGATGTTGAAGTGGAACAGTAC
CGAAACTATGACAAAGCACATGAAGCTTTGTTGGAAGCACGCAAACAGAT
GCAAGATTCTGGTGCCGAGAAT
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