mRNA_M-pyrifera_M_contig124458.4974.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124458.4974.1
Unique NamemRNA_M-pyrifera_M_contig124458.4974.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: A0A232EN11_9HYME (Uncharacterized protein n=1 Tax=Trichomalopsis sarcophagae TaxID=543379 RepID=A0A232EN11_9HYME)

HSP 1 Score: 54.7 bits (130), Expect = 8.610e-7
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   28 IVYATQGGDVATLERYLNEYPEILTTQDNTGNTILHIAGAYNRKNVVELLLAKGADPTIQNYDGQ 222
            ++ A + G+   + R L +Y   + T+D  GNT+LH A  Y+RK+V +  L  GADP   NY+GQ
Sbjct:   83 LLIAIRVGESLAIIRLLVKYGAYIDTRDTVGNTVLHYAAKYSRKDVFDFFLKHGADPNEINYNGQ 147          
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: UPI001886165D (SH3 and multiple ankyrin repeat domains protein 2b isoform X4 n=4 Tax=Syngnathus acus TaxID=161584 RepID=UPI001886165D)

HSP 1 Score: 52.8 bits (125), Expect = 4.400e-6
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   13 DGIDAIVYATQGGDVATLERYLNEYPEILTTQDNTGNTILHIAGAYNRKNVVELLLAKGADPTIQNYDGQDCYEYA 240
            +G   I  A + G V  LE  L  Y   ++ Q+ TGNT LHI   YN+ N V++LL +GAD  ++NY+ Q  ++ A
Sbjct:  314 NGWHEIHQACRHGHVQHLEHLLF-YGADMSAQNATGNTALHICALYNQDNCVKVLLVRGADKEVKNYNSQSPFQVA 388          
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: A0A814NTZ6_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814NTZ6_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 9.260e-6
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   37 ATQGGDVATLERYLNE--YPEILTTQDNTGNTILHIAGAYNRKNVVELLLAKGADPTIQNY 213
            A Q G+ AT+E  L+   Y EI    +N G T LH A  Y  K VVELLL +GAD TI+N+
Sbjct:   20 ACQNGETATVESMLSHLTYKEINQQHEN-GRTPLHAACCYGNKKVVELLLERGADRTIENH 79          
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: UPI000742A82E (SH3 and multiple ankyrin repeat domains protein 3-like n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=UPI000742A82E)

HSP 1 Score: 50.8 bits (120), Expect = 1.970e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 DGIDAIVYATQGGDVATLERYLNEYPEILTTQDNTGNTILHIAGAYNRKNVVELLLAKGADPTIQNYDGQDCYEYA 240
            +G   +  A + G V  LE  L  Y  +++ Q+ +GNT LHI   YN+ N   +LL +GAD  ++NY+ Q  ++ A
Sbjct:  317 NGWHEVHQACRHGHVQHLEHLLF-YGAVMSAQNASGNTALHICALYNQDNCARVLLVRGADKEVKNYNSQTPFQVA 391          
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: A0A482X5J9_LAOST (Poly [ADP-ribose] polymerase n=2 Tax=Delphacidae TaxID=33362 RepID=A0A482X5J9_LAOST)

HSP 1 Score: 50.8 bits (120), Expect = 2.080e-5
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    1 PPELDGIDAIVYATQGGDVATLERYLNEYPEILTTQDNTG--NTILHIAGAYNRKNVVELLLAKGAD 195
            P  LD  + ++ A + GD   ++R L  YP I+  +D  G  +T LH A  YNR +VVE LLA GAD
Sbjct:  484 PAVLDLENQLLEAAKAGDSEQVQRLLTAYPHIVNCRDLDGRHSTPLHFAAGYNRVDVVEYLLAHGAD 550          
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: A0A3Q2PSE4_FUNHE (SH3 and multiple ankyrin repeat domains protein 2-like n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2PSE4_FUNHE)

HSP 1 Score: 50.8 bits (120), Expect = 2.100e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 DGIDAIVYATQGGDVATLERYLNEYPEILTTQDNTGNTILHIAGAYNRKNVVELLLAKGADPTIQNYDGQDCYEYA 240
            +G   +  A + G V  LE  L  Y  +++ Q+ +GNT LHI   YN+ N   +LL +GAD  ++NY+ Q  ++ A
Sbjct:  296 NGWHEVHQACRHGHVQHLEHLLF-YGAVMSAQNASGNTALHICALYNQDNCARVLLVRGADKEVKNYNSQTPFQVA 370          
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: UPI00165BA6AC (SH3 and multiple ankyrin repeat domains protein 2 isoform X3 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165BA6AC)

HSP 1 Score: 50.8 bits (120), Expect = 2.100e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 DGIDAIVYATQGGDVATLERYLNEYPEILTTQDNTGNTILHIAGAYNRKNVVELLLAKGADPTIQNYDGQDCYEYA 240
            +G   +  A + G V  LE  L  Y  +++ Q+ +GNT LHI   YN+ N   +LL +GAD  ++NY+ Q  ++ A
Sbjct:  308 NGWHEVHQACRHGHVQHLEHLLF-YGAVMSAQNASGNTALHICALYNQDNCARVLLVRGADKEVKNYNSQTPFQVA 382          
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: UPI00072E98B0 (SH3 and multiple ankyrin repeat domains protein 3-like n=1 Tax=Poecilia mexicana TaxID=48701 RepID=UPI00072E98B0)

HSP 1 Score: 50.4 bits (119), Expect = 2.790e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 DGIDAIVYATQGGDVATLERYLNEYPEILTTQDNTGNTILHIAGAYNRKNVVELLLAKGADPTIQNYDGQDCYEYA 240
            +G   +  A + G V  LE  L  Y  +++ Q+ +GNT LHI   YN+ N   +LL +GAD  ++NY+ Q  ++ A
Sbjct:  461 NGWHEVHQACRHGHVQHLEHLLF-YGALMSAQNASGNTALHICALYNQDNCARVLLVRGADKEVKNYNSQTPFQVA 535          
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: M4AHD3_XIPMA (Uncharacterized protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=M4AHD3_XIPMA)

HSP 1 Score: 50.4 bits (119), Expect = 2.870e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 DGIDAIVYATQGGDVATLERYLNEYPEILTTQDNTGNTILHIAGAYNRKNVVELLLAKGADPTIQNYDGQDCYEYA 240
            +G   +  A + G V  LE  L  Y  +++ Q+ +GNT LHI   YN+ N   +LL +GAD  ++NY+ Q  ++ A
Sbjct:  296 NGWHEVHQACRHGHVQHLEHLLF-YGALMSAQNASGNTALHICALYNQDNCARVLLVRGADKEVKNYNSQTPFQVA 370          
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Match: UPI00072E8917 (SH3 and multiple ankyrin repeat domains protein 2 isoform X3 n=1 Tax=Poecilia latipinna TaxID=48699 RepID=UPI00072E8917)

HSP 1 Score: 50.4 bits (119), Expect = 2.870e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 DGIDAIVYATQGGDVATLERYLNEYPEILTTQDNTGNTILHIAGAYNRKNVVELLLAKGADPTIQNYDGQDCYEYA 240
            +G   +  A + G V  LE  L  Y  +++ Q+ +GNT LHI   YN+ N   +LL +GAD  ++NY+ Q  ++ A
Sbjct:  226 NGWHEVHQACRHGHVQHLEHLLF-YGALMSAQNASGNTALHICALYNQDNCARVLLVRGADKEVKNYNSQTPFQVA 300          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124458.4974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A232EN11_9HYME8.610e-740.00Uncharacterized protein n=1 Tax=Trichomalopsis sar... [more]
UPI001886165D4.400e-639.47SH3 and multiple ankyrin repeat domains protein 2b... [more]
A0A814NTZ6_9BILA9.260e-649.18Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
UPI000742A82E1.970e-535.53SH3 and multiple ankyrin repeat domains protein 3-... [more]
A0A482X5J9_LAOST2.080e-543.28Poly [ADP-ribose] polymerase n=2 Tax=Delphacidae T... [more]
A0A3Q2PSE4_FUNHE2.100e-535.53SH3 and multiple ankyrin repeat domains protein 2-... [more]
UPI00165BA6AC2.100e-535.53SH3 and multiple ankyrin repeat domains protein 2 ... [more]
UPI00072E98B02.790e-535.53SH3 and multiple ankyrin repeat domains protein 3-... [more]
M4AHD3_XIPMA2.870e-535.53Uncharacterized protein n=1 Tax=Xiphophorus macula... [more]
UPI00072E89172.870e-535.53SH3 and multiple ankyrin repeat domains protein 2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124458contigM-pyrifera_M_contig124458:273..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.9132068-CDS-M-pyrifera_M_contig124458:272..5181622815761.9132068-CDS-M-pyrifera_M_contig124458:272..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124458 273..518 +
1692277557.309136-CDS-M-pyrifera_M_contig124458:272..5181692277557.309136-CDS-M-pyrifera_M_contig124458:272..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124458 273..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124458.4974.1prot_M-pyrifera_M_contig124458.4974.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124458 273..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124458.4974.1

>prot_M-pyrifera_M_contig124458.4974.1 ID=prot_M-pyrifera_M_contig124458.4974.1|Name=mRNA_M-pyrifera_M_contig124458.4974.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
PPELDGIDAIVYATQGGDVATLERYLNEYPEILTTQDNTGNTILHIAGAY
NRKNVVELLLAKGADPTIQNYDGQDCYEYADD
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mRNA from alignment at M-pyrifera_M_contig124458:273..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124458.4974.1 ID=mRNA_M-pyrifera_M_contig124458.4974.1|Name=mRNA_M-pyrifera_M_contig124458.4974.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig124458:273..518+ (Macrocystis pyrifera P11B4 male)
CCCCCCGAGCTGGACGGTATCGACGCCATCGTCTACGCCACCCAGGGAGG CGATGTGGCAACCTTGGAGCGGTACCTCAATGAGTACCCGGAAATACTGA CCACCCAGGACAACACGGGTAACACCATACTCCACATTGCCGGTGCCTAT AACCGCAAGAATGTTGTCGAACTACTGCTCGCCAAGGGCGCCGACCCCAC CATCCAGAACTACGACGGCCAGGATTGTTATGAATACGCGGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124458:273..518+

>mRNA_M-pyrifera_M_contig124458.4974.1 ID=mRNA_M-pyrifera_M_contig124458.4974.1|Name=mRNA_M-pyrifera_M_contig124458.4974.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig124458:273..518+ (Macrocystis pyrifera P11B4 male)
CCCCCCGAGCTGGACGGTATCGACGCCATCGTCTACGCCACCCAGGGAGG
CGATGTGGCAACCTTGGAGCGGTACCTCAATGAGTACCCGGAAATACTGA
CCACCCAGGACAACACGGGTAACACCATACTCCACATTGCCGGTGCCTAT
AACCGCAAGAATGTTGTCGAACTACTGCTCGCCAAGGGCGCCGACCCCAC
CATCCAGAACTACGACGGCCAGGATTGTTATGAATACGCGGACGACCCCC
CCGAGCTGGACGGTATCGACGCCATCGTCTACGCCACCCAGGGAGGCGAT
GTGGCAACCTTGGAGCGGTACCTCAATGAGTACCCGGAAATACTGACCAC
CCAGGACAACACGGGTAACACCATACTCCACATTGCCGGTGCCTATAACC
GCAAGAATGTTGTCGAACTACTGCTCGCCAAGGGCGCCGACCCCACCATC
CAGAACTACGACGGCCAGGATTGTTATGAATACGCGGACGAC
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