mRNA_M-pyrifera_M_contig124442.4968.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124442.4968.1
Unique NamemRNA_M-pyrifera_M_contig124442.4968.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124442.4968.1 vs. uniprot
Match: A0A517PLS2_9PLAN (Putative lyase n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517PLS2_9PLAN)

HSP 1 Score: 115 bits (288), Expect = 1.050e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:   55 MRQLLTAGLTLAICLLATPLLLSASMDVNKLVQELKSNNEDAQALAAHQLGELGPSAKAAVPA 243
            MRQLLTAGLTLAICLLATPLLLSASMDVNKLVQELKSNNEDAQALAAHQLGELGPSAKAAVPA
Sbjct:    1 MRQLLTAGLTLAICLLATPLLLSASMDVNKLVQELKSNNEDAQALAAHQLGELGPSAKAAVPA 63
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BLAST of mRNA_M-pyrifera_M_contig124442.4968.1 vs. uniprot
Match: A0A518A4I6_9PLAN (Putative lyase n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A4I6_9PLAN)

HSP 1 Score: 97.4 bits (241), Expect = 2.200e-20
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:   55 MRQLLTAGLTLAICLLATPLLLSASMDVNKLVQELKSNNEDAQALAAHQLGELGPSAKAAVP 240
            MRQLLTAGLTLAICLL+TP L +AS DV+ LV+ELKS NEDAQALAAHQLGELGPSAK+AVP
Sbjct:    1 MRQLLTAGLTLAICLLSTPFLFAASTDVDSLVRELKSENEDAQALAAHQLGELGPSAKSAVP 62
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BLAST of mRNA_M-pyrifera_M_contig124442.4968.1 vs. uniprot
Match: A0A517RDS1_9PLAN (Putative phycocyanin operon protein Z n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RDS1_9PLAN)

HSP 1 Score: 75.9 bits (185), Expect = 6.940e-13
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   55 MRQLLTAGLTLAICLLATPLLLSASMDVNKLVQELKSNNEDAQALAAHQLGELGPSAKAAVPA 243
            MRQL+TAGL L++CL AT  L + S D++ L+ +LK  NED QALAAHQLGELG +AK+AVPA
Sbjct:    1 MRQLITAGLFLSLCLFATENLFAQSPDIDSLILQLKGENEDQQALAAHQLGELGSNAKSAVPA 63
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BLAST of mRNA_M-pyrifera_M_contig124442.4968.1 vs. uniprot
Match: A0A518IAH6_9PLAN (Putative lyase n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IAH6_9PLAN)

HSP 1 Score: 64.7 bits (156), Expect = 5.110e-9
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   55 MRQLLTAGLTLAICLLATPLLLSASMDVNKLVQELKSNNEDAQALAAHQLGELGPSAKAAVPA 243
            MRQLLTAGL L I LL    + + + D+N L+ EL S NE  QALAAHQLG LGP +K A+PA
Sbjct:    1 MRQLLTAGLLLGIYLLTPDFVSAQTPDINSLIIELDSENEVKQALAAHQLGTLGPVSKPAIPA 63
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124442.4968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A517PLS2_9PLAN1.050e-26100.00Putative lyase n=8 Tax=Gimesia TaxID=1649453 RepID... [more]
A0A518A4I6_9PLAN2.200e-2083.87Putative lyase n=3 Tax=Gimesia panareensis TaxID=2... [more]
A0A517RDS1_9PLAN6.940e-1363.49Putative phycocyanin operon protein Z n=1 Tax=Gime... [more]
A0A518IAH6_9PLAN5.110e-958.73Putative lyase n=1 Tax=Gimesia fumaroli TaxID=2527... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124442contigM-pyrifera_M_contig124442:2..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.686665-CDS-M-pyrifera_M_contig124442:1..5171622815761.686665-CDS-M-pyrifera_M_contig124442:1..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124442 2..517 +
1692277557.2078464-CDS-M-pyrifera_M_contig124442:1..5171692277557.2078464-CDS-M-pyrifera_M_contig124442:1..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124442 2..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124442.4968.1prot_M-pyrifera_M_contig124442.4968.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124442 2..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124442.4968.1

>prot_M-pyrifera_M_contig124442.4968.1 ID=prot_M-pyrifera_M_contig124442.4968.1|Name=mRNA_M-pyrifera_M_contig124442.4968.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
FLSTDHWYSQRSAPGTMLMRQLLTAGLTLAICLLATPLLLSASMDVNKLV
QELKSNNEDAQALAAHQLGELGPSAKAAVPALISVVKEGSVAARSEAITA
LGKIGPDASAAVPELAKVLRGYSVILKYNALQALRQIGPGAKPALKQIMP
LLESNNSYLKISAAWAAAKIDP
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mRNA from alignment at M-pyrifera_M_contig124442:2..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124442.4968.1 ID=mRNA_M-pyrifera_M_contig124442.4968.1|Name=mRNA_M-pyrifera_M_contig124442.4968.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig124442:2..517+ (Macrocystis pyrifera P11B4 male)
TTCTTATCCACAGACCACTGGTACTCGCAACGATCAGCTCCAGGAACCAT
GCTCATGCGTCAGTTACTTACTGCAGGACTCACTTTGGCGATCTGTCTGC
TCGCGACTCCCCTACTTCTTTCAGCCAGCATGGACGTCAATAAACTGGTC
CAGGAACTGAAAAGCAACAATGAGGACGCTCAGGCACTGGCAGCACACCA
GTTGGGCGAATTGGGGCCGAGTGCGAAAGCTGCGGTACCAGCGCTGATTT
CTGTCGTTAAAGAGGGTTCTGTAGCGGCCCGCAGTGAAGCCATCACCGCC
CTGGGAAAAATCGGGCCTGATGCCTCAGCTGCCGTTCCTGAACTTGCCAA
AGTTCTGCGTGGTTATTCTGTCATTCTTAAGTACAACGCTTTGCAGGCCC
TCCGCCAGATTGGTCCCGGGGCCAAACCCGCTCTGAAGCAGATCATGCCT
CTGCTGGAGAGTAACAATTCTTACTTGAAAATTTCCGCCGCCTGGGCTGC
TGCGAAAATCGATCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124442:2..517+

>mRNA_M-pyrifera_M_contig124442.4968.1 ID=mRNA_M-pyrifera_M_contig124442.4968.1|Name=mRNA_M-pyrifera_M_contig124442.4968.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig124442:2..517+ (Macrocystis pyrifera P11B4 male)
TTCTTATCCACAGACCACTGGTACTCGCAACGATCAGCTCCAGGAACCAT
GCTCATGCGTCAGTTACTTACTGCAGGACTCACTTTGGCGATCTGTCTGC
TCGCGACTCCCCTACTTCTTTCAGCCAGCATGGACGTCAATAAACTGGTC
CAGGAACTGAAAAGCAACAATGAGGACGCTCAGGCACTGGCAGCACACCA
GTTGGGCGAATTGGGGCCGAGTGCGAAAGCTGCGGTACCAGCGCTGATTT
CTGTCGTTAAAGAGGGTTCTGTAGCGGCCCGCAGTGAAGCCATCACCGCC
CTGGGAAAAATCGGGCCTGATGCCTCAGCTGCCGTTCCTGAACTTGCCAA
AGTTCTGCGTGGTTATTCTGTCATTCTTAAGTACAACGCTTTGCAGGCCC
TCCGCCAGATTGGTCCCGGGGCCAAACCCGCTCTGAAGCAGATCATGCCT
CTGCTGGAGAGTAACAATTCTTACTTGAAAATTTCCGCCGCCTGGGCTGC
TGCGAAAATCGATCCTTTCTTATCCACAGACCACTGGTACTCGCAACGAT
CAGCTCCAGGAACCATGCTCATGCGTCAGTTACTTACTGCAGGACTCACT
TTGGCGATCTGTCTGCTCGCGACTCCCCTACTTCTTTCAGCCAGCATGGA
CGTCAATAAACTGGTCCAGGAACTGAAAAGCAACAATGAGGACGCTCAGG
CACTGGCAGCACACCAGTTGGGCGAATTGGGGCCGAGTGCGAAAGCTGCG
GTACCAGCGCTGATTTCTGTCGTTAAAGAGGGTTCTGTAGCGGCCCGCAG
TGAAGCCATCACCGCCCTGGGAAAAATCGGGCCTGATGCCTCAGCTGCCG
TTCCTGAACTTGCCAAAGTTCTGCGTGGTTATTCTGTCATTCTTAAGTAC
AACGCTTTGCAGGCCCTCCGCCAGATTGGTCCCGGGGCCAAACCCGCTCT
GAAGCAGATCATGCCTCTGCTGGAGAGTAACAATTCTTACTTGAAAATTT
CCGCCGCCTGGGCTGCTGCGAAAATCGATCCT
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