mRNA_M-pyrifera_M_contig12442.4960.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12442.4960.1
Unique NamemRNA_M-pyrifera_M_contig12442.4960.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12442.4960.1 vs. uniprot
Match: D7G739_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G739_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 7.990e-21
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:   43 SSTQHKLEFLEDRVLLVISSLGLLCVTAAIFWVVRQSPDWARGGAGHPGGDEDAAGDGVVLGTRTRVVPGGREATKASRKE 285
            S  + +L FL+D ++LVISS+GLLCVTAA+ WVVRQSPDW +     P G++D  GD  +LG RTRVVPGGREA KA+RKE
Sbjct:    3 SDQEDQLTFLDDTLILVISSVGLLCVTAAVLWVVRQSPDWQKADR-QPAGEQD--GDAGLLGGRTRVVPGGREAAKAARKE 80
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12442.4960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G739_ECTSI7.990e-2161.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12442contigM-pyrifera_M_contig12442:7877..8183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue3.4e-17
Seed eggNOG ortholog2880.D7G739
Preferred nameDDRGK1
KEGG koko:K15437
Hectar predicted targeting categorysignal anchor
GOsGO:0001085,GO:0001103,GO:0001501,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006355,GO:0006357,GO:0006464,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010952,GO:0012505,GO:0016020,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0030334,GO:0030335,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0033143,GO:0033146,GO:0033554,GO:0034976,GO:0036211,GO:0040012,GO:0040017,GO:0042127,GO:0042175,GO:0042176,GO:0042325,GO:0042327,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043122,GO:0043123,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045862,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051174,GO:0051216,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051716,GO:0051726,GO:0052547,GO:0060255,GO:0060341,GO:0060548,GO:0061136,GO:0061448,GO:0065007,GO:0065009,GO:0070013,GO:0070491,GO:0070647,GO:0071569,GO:0071704,GO:0080090,GO:0090068,GO:0098827,GO:1901564,GO:1901800,GO:1901987,GO:1901989,GO:1902531,GO:1902533,GO:1902680,GO:1902806,GO:1902808,GO:1903025,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903719,GO:1903721,GO:1903827,GO:1903829,GO:1905048,GO:1905050,GO:1905550,GO:1905552,GO:1905636,GO:1990564,GO:1990592,GO:2000058,GO:2000060,GO:2000112,GO:2000145,GO:2000147,GO:2000677,GO:2000679,GO:2001141
EggNOG free text desc.positive regulation of I-kappaB phosphorylation
EggNOG OGsKOG3054@1,KOG3054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Exons1
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.3378081-CDS-M-pyrifera_M_contig12442:7876..81821622815761.3378081-CDS-M-pyrifera_M_contig12442:7876..8182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12442 7877..8182 +
1692277557.0403342-CDS-M-pyrifera_M_contig12442:7876..81821692277557.0403342-CDS-M-pyrifera_M_contig12442:7876..8182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12442 7877..8182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12442.4960.1prot_M-pyrifera_M_contig12442.4960.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12442 7877..8182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12442.4960.1

>prot_M-pyrifera_M_contig12442.4960.1 ID=prot_M-pyrifera_M_contig12442.4960.1|Name=mRNA_M-pyrifera_M_contig12442.4960.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
AVLGAGAHSIIRVMSSTQHKLEFLEDRVLLVISSLGLLCVTAAIFWVVRQ
SPDWARGGAGHPGGDEDAAGDGVVLGTRTRVVPGGREATKASRKEAKKRA
KA
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mRNA from alignment at M-pyrifera_M_contig12442:7877..8183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12442.4960.1 ID=mRNA_M-pyrifera_M_contig12442.4960.1|Name=mRNA_M-pyrifera_M_contig12442.4960.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=307bp|location=Sequence derived from alignment at M-pyrifera_M_contig12442:7877..8183+ (Macrocystis pyrifera P11B4 male)
GCTGTGCTTGGTGCTGGCGCACACAGCATCATTCGCGTCATGTCTTCGAC
ACAACACAAGCTCGAATTCTTGGAAGATAGAGTCCTTCTGGTGATATCTT
CGCTGGGGCTTTTATGCGTGACTGCGGCAATTTTTTGGGTTGTCCGACAG
AGCCCCGACTGGGCACGAGGAGGAGCTGGCCATCCAGGTGGAGATGAGGA
TGCGGCCGGGGATGGGGTCGTGCTTGGCACCAGGACTAGGGTTGTCCCAG
GAGGACGTGAAGCTACGAAGGCGTCTCGGAAAGAGGCCAAGAAGCGAGCA
AAGGCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12442:7877..8183+

>mRNA_M-pyrifera_M_contig12442.4960.1 ID=mRNA_M-pyrifera_M_contig12442.4960.1|Name=mRNA_M-pyrifera_M_contig12442.4960.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig12442:7877..8183+ (Macrocystis pyrifera P11B4 male)
GCTGTGCTTGGTGCTGGCGCACACAGCATCATTCGCGTCATGTCTTCGAC
ACAACACAAGCTCGAATTCTTGGAAGATAGAGTCCTTCTGGTGATATCTT
CGCTGGGGCTTTTATGCGTGACTGCGGCAATTTTTTGGGTTGTCCGACAG
AGCCCCGACTGGGCACGAGGAGGAGCTGGCCATCCAGGTGGAGATGAGGA
TGCGGCCGGGGATGGGGTCGTGCTTGGCACCAGGACTAGGGTTGTCCCAG
GAGGACGTGAAGCTACGAAGGCGTCTCGGAAAGAGGCCAAGAAGCGAGCA
AAGGCGGCTGTGCTTGGTGCTGGCGCACACAGCATCATTCGCGTCATGTC
TTCGACACAACACAAGCTCGAATTCTTGGAAGATAGAGTCCTTCTGGTGA
TATCTTCGCTGGGGCTTTTATGCGTGACTGCGGCAATTTTTTGGGTTGTC
CGACAGAGCCCCGACTGGGCACGAGGAGGAGCTGGCCATCCAGGTGGAGA
TGAGGATGCGGCCGGGGATGGGGTCGTGCTTGGCACCAGGACTAGGGTTG
TCCCAGGAGGACGTGAAGCTACGAAGGCGTCTCGGAAAGAGGCCAAGAAG
CGAGCAAAGGCG
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