mRNA_M-pyrifera_M_contig124410.4957.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124410.4957.1
Unique NamemRNA_M-pyrifera_M_contig124410.4957.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: A0A2P6NX80_9EUKA (UDENN domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NX80_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 1.750e-13
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    4 MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLI-MDCDSRTVSAP---KMKRLPNRSKLYPLYS 249
            +S IPLL P VWQGP+IPILP NM+E+L +PVP ++G S + D+   EL D  ++ ++     ++ P   K+  LP+  KLY L+S
Sbjct:  421 LSIIPLLRPYVWQGPIIPILPANMMEFLQSPVPYIVGVSELPDSLASELCDATILRINKTDDVITQPVPEKLPSLPHYEKLYLLFS 506          
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: L8HI74_ACACA (DENN (AEX3) domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HI74_ACACA)

HSP 1 Score: 67.8 bits (164), Expect = 2.630e-11
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 SMSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLIMDCDSRTVSAPKMKRLPNRSKLYPLYSPLA 258
            ++S I LL P++WQGP IPILP NM E +++PVP +IG   +D  ++  +   CL++D ++  ++ P    LPN  K   L   LA
Sbjct:  679 TLSVIALLRPLMWQGPFIPILPSNMDECVESPVPFIIGVQKLDADREAIVRSDCLVLDVENDALTLPSY-HLPNLPKERELADKLA 763          
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: UPI001FB14140 (uncharacterized protein LOC107877913 isoform X2 n=1 Tax=Capsicum annuum TaxID=4072 RepID=UPI001FB14140)

HSP 1 Score: 64.3 bits (155), Expect = 4.260e-10
Identity = 28/83 (33.73%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    4 MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLIMDCDSRTVSAPKMKRLPNRSKLYPLYSP 252
            +S IPL+ P  WQ  ++P+LP +M+++LDAPVP ++G        + +L  + +++D +   V +P + +LP + +LY   SP
Sbjct:  610 LSIIPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLT-NAILVDANKNQVKSPTLPQLPQQKELYSSLSP 691          
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: A0A3Q7HBU7_SOLLC (UDENN domain-containing protein n=20 Tax=Solanaceae TaxID=4070 RepID=A0A3Q7HBU7_SOLLC)

HSP 1 Score: 64.3 bits (155), Expect = 4.280e-10
Identity = 28/83 (33.73%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    4 MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLIMDCDSRTVSAPKMKRLPNRSKLYPLYSP 252
            +S IPL+ P  WQ  ++P+LP +M+++LDAPVP ++G        + +L  + +++D +   V +P + +LP + +LY   SP
Sbjct:  611 LSIIPLIRPYQWQSLLMPLLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLT-NAILVDANKNQVKSPTLPQLPQQKELYSCLSP 692          
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: A0A6P4A5N1_ZIZJJ (uncharacterized protein LOC107424124 n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4A5N1_ZIZJJ)

HSP 1 Score: 64.3 bits (155), Expect = 4.280e-10
Identity = 28/83 (33.73%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    4 MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLIMDCDSRTVSAPKMKRLPNRSKLYPLYSP 252
            +S IPL+ P  WQ  ++P+LP +M+++LDAPVP ++G     +  + +L+ + +++D +   V AP + +LP + +L+   SP
Sbjct:  621 LSVIPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTNEVQSKLS-NVILVDANKNQVKAPTIPQLPQQKELFSSLSP 702          
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: UPI00053C0963 (uncharacterized protein LOC104808888 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0963)

HSP 1 Score: 63.9 bits (154), Expect = 5.840e-10
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    4 MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLIMDCDSRTVSAPKMKRLPNRSKLYPLYSP 252
            +S IPL+ P  WQ  ++P+LP +M+E+LDAPVP ++G        + +LA + +++D +   + +P + +LP   +LY   SP
Sbjct:  602 LSIIPLIRPYQWQSLLMPVLPDDMLEFLDAPVPYVVGVKNKTSEVQSKLA-NVIVVDVNKNQIKSPSIPQLPQYRELYSALSP 683          
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: M5W9B8_PRUPE (UDENN domain-containing protein n=19 Tax=Prunus TaxID=3754 RepID=M5W9B8_PRUPE)

HSP 1 Score: 63.9 bits (154), Expect = 5.850e-10
Identity = 28/83 (33.73%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    4 MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLIMDCDSRTVSAPKMKRLPNRSKLYPLYSP 252
            +S IPL+ P  WQ  ++P+LP +M+++LDAPVP ++G     +  + +LA + +++D +   V +P + +LP   +L+   SP
Sbjct:  622 LSIIPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTNEVQSKLA-NVILVDANKNQVKSPTLPQLPQHKELFSSLSP 703          
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: A0A4D9BIL3_SALSN (UDENN domain-containing protein n=7 Tax=Salvia TaxID=21880 RepID=A0A4D9BIL3_SALSN)

HSP 1 Score: 63.9 bits (154), Expect = 5.860e-10
Identity = 27/83 (32.53%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    4 MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLIMDCDSRTVSAPKMKRLPNRSKLYPLYSP 252
            +S IPL+ P  WQ  ++P+LP +M+++LDAPVP ++G    +  + +    + +++D +   V +P + +LP + +L+ L SP
Sbjct:  627 LSIIPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVK--NKTELQAKLTNVIVVDANKNQVKSPSLPQLPQQRELHSLLSP 707          
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: A0A371HIX9_MUCPR (DENN domain-containing protein 5B (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HIX9_MUCPR)

HSP 1 Score: 62.8 bits (151), Expect = 6.160e-10
Identity = 25/77 (32.47%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    4 MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLIMDCDSRTVSAPKMKRLPNRSKL 234
            +S IPL+ P  WQ  ++PILP +++E+LDAPVP ++G    ++  + +L ++ +++D +   V +  + +LP + +L
Sbjct:   41 LSVIPLIRPFQWQSLLMPILPNDLLEFLDAPVPYIVGVKNKNNEVQSKLTNNIILIDANRNQVKSSTIPQLPRQKEL 117          
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Match: A0A059CLW7_EUCGR (UDENN domain-containing protein (Fragment) n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CLW7_EUCGR)

HSP 1 Score: 63.5 bits (153), Expect = 7.870e-10
Identity = 28/83 (33.73%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    4 MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELADHCLIMDCDSRTVSAPKMKRLPNRSKLYPLYSP 252
            +S IPL+ P  WQ  ++P+LP +M+E+LDAPVP ++G        + ++A + +++D +   V +P + +LP   +L+   SP
Sbjct:  426 LSVIPLIRPYQWQSLLMPVLPNDMLEFLDAPVPYVVGIKNKTSEVQSKIA-NVILVDANKNQVKSPSIPQLPRHKELFSSLSP 507          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124410.4957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6NX80_9EUKA1.750e-1344.19UDENN domain-containing protein n=1 Tax=Planoproto... [more]
L8HI74_ACACA2.630e-1139.53DENN (AEX3) domain containing protein n=1 Tax=Acan... [more]
UPI001FB141404.260e-1033.73uncharacterized protein LOC107877913 isoform X2 n=... [more]
A0A3Q7HBU7_SOLLC4.280e-1033.73UDENN domain-containing protein n=20 Tax=Solanacea... [more]
A0A6P4A5N1_ZIZJJ4.280e-1033.73uncharacterized protein LOC107424124 n=3 Tax=Zizip... [more]
UPI00053C09635.840e-1034.94uncharacterized protein LOC104808888 n=1 Tax=Taren... [more]
M5W9B8_PRUPE5.850e-1033.73UDENN domain-containing protein n=19 Tax=Prunus Ta... [more]
A0A4D9BIL3_SALSN5.860e-1032.53UDENN domain-containing protein n=7 Tax=Salvia Tax... [more]
A0A371HIX9_MUCPR6.160e-1032.47DENN domain-containing protein 5B (Fragment) n=1 T... [more]
A0A059CLW7_EUCGR7.870e-1033.73UDENN domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124410contigM-pyrifera_M_contig124410:134..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog225117.XP_009361695.1
KEGG koko:K20161,ko:K20164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
EggNOG OGs28JXY@1,2QSCA@2759,37KGY@33090,3GEPS@35493,4JNNB@91835
COG Functional cat.T
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size258
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.1390314-UTR-M-pyrifera_M_contig124410:133..1361622815761.1390314-UTR-M-pyrifera_M_contig124410:133..136Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124410 134..136 +
1692277556.9576657-UTR-M-pyrifera_M_contig124410:133..1361692277556.9576657-UTR-M-pyrifera_M_contig124410:133..136Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124410 134..136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.155182-CDS-M-pyrifera_M_contig124410:136..3911622815761.155182-CDS-M-pyrifera_M_contig124410:136..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124410 137..391 +
1692277556.9695585-CDS-M-pyrifera_M_contig124410:136..3911692277556.9695585-CDS-M-pyrifera_M_contig124410:136..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124410 137..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124410.4957.1prot_M-pyrifera_M_contig124410.4957.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124410 137..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124410.4957.1

>prot_M-pyrifera_M_contig124410.4957.1 ID=prot_M-pyrifera_M_contig124410.4957.1|Name=mRNA_M-pyrifera_M_contig124410.4957.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MSAIPLLHPIVWQGPMIPILPRNMVEYLDAPVPSLIGTSLVDDAKKEELA
DHCLIMDCDSRTVSAPKMKRLPNRSKLYPLYSPLA
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mRNA from alignment at M-pyrifera_M_contig124410:134..391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124410.4957.1 ID=mRNA_M-pyrifera_M_contig124410.4957.1|Name=mRNA_M-pyrifera_M_contig124410.4957.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig124410:134..391+ (Macrocystis pyrifera P11B4 male)
AGCATGTCAGCGATTCCGCTGCTTCACCCCATTGTGTGGCAGGGACCGAT GATTCCCATCCTGCCACGCAACATGGTGGAGTACCTTGATGCGCCGGTGC CGTCGCTCATAGGCACATCCCTCGTGGACGACGCCAAGAAGGAAGAGCTC GCCGACCACTGCCTCATCATGGACTGCGACAGCCGAACAGTCAGCGCCCC CAAGATGAAGCGCCTCCCGAACCGCTCCAAGCTATATCCTCTCTACAGCC CACTCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124410:134..391+

>mRNA_M-pyrifera_M_contig124410.4957.1 ID=mRNA_M-pyrifera_M_contig124410.4957.1|Name=mRNA_M-pyrifera_M_contig124410.4957.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig124410:134..391+ (Macrocystis pyrifera P11B4 male)
ATGTCAGCGATTCCGCTGCTTCACCCCATTGTGTGGCAGGGACCGATGAT
TCCCATCCTGCCACGCAACATGGTGGAGTACCTTGATGCGCCGGTGCCGT
CGCTCATAGGCACATCCCTCGTGGACGACGCCAAGAAGGAAGAGCTCGCC
GACCACTGCCTCATCATGGACTGCGACAGCCGAACAGTCAGCGCCCCCAA
GATGAAGCGCCTCCCGAACCGCTCCAAGCTATATCCTCTCTACAGCCCAC
TCGCTATGTCAGCGATTCCGCTGCTTCACCCCATTGTGTGGCAGGGACCG
ATGATTCCCATCCTGCCACGCAACATGGTGGAGTACCTTGATGCGCCGGT
GCCGTCGCTCATAGGCACATCCCTCGTGGACGACGCCAAGAAGGAAGAGC
TCGCCGACCACTGCCTCATCATGGACTGCGACAGCCGAACAGTCAGCGCC
CCCAAGATGAAGCGCCTCCCGAACCGCTCCAAGCTATATCCTCTCTACAG
CCCACTCGCT
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