mRNA_M-pyrifera_M_contig124400.4955.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124400.4955.1
Unique NamemRNA_M-pyrifera_M_contig124400.4955.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124400.4955.1 vs. uniprot
Match: A0A7Y3LGH0_9ACTN (Rod shape-determining protein MreD n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7Y3LGH0_9ACTN)

HSP 1 Score: 51.6 bits (122), Expect = 1.560e-5
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 VRIDIPLILIVAVGFVDNPSDAAILGFVTDLLLDTLQFGPFGLSALVYCLAGWL 162
            V +D+PL+L++  GF +     A++GF   LL D     PFGLSALVY L G++
Sbjct:   31 VHLDLPLLLVICAGFSEGREGGAVIGFAVGLLSDGFLITPFGLSALVYSLIGYI 84
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124400.4955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y3LGH0_9ACTN1.560e-544.44Rod shape-determining protein MreD n=1 Tax=Acidimi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124400contigM-pyrifera_M_contig124400:2..367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.0385683-CDS-M-pyrifera_M_contig124400:1..3671622815761.0385683-CDS-M-pyrifera_M_contig124400:1..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124400 2..367 +
1692277556.8956158-CDS-M-pyrifera_M_contig124400:1..3671692277556.8956158-CDS-M-pyrifera_M_contig124400:1..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124400 2..367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124400.4955.1prot_M-pyrifera_M_contig124400.4955.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124400 2..367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124400.4955.1

>prot_M-pyrifera_M_contig124400.4955.1 ID=prot_M-pyrifera_M_contig124400.4955.1|Name=mRNA_M-pyrifera_M_contig124400.4955.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
VRIDIPLILIVAVGFVDNPSDAAILGFVTDLLLDTLQFGPFGLSALVYCL
AGWLIVLARLRVLQAGASFRTVQGATIVMLVTAATWAAGMIFGLRAIPLD
PTAIARLALVGLVGAVLVHPMI
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mRNA from alignment at M-pyrifera_M_contig124400:2..367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124400.4955.1 ID=mRNA_M-pyrifera_M_contig124400.4955.1|Name=mRNA_M-pyrifera_M_contig124400.4955.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig124400:2..367+ (Macrocystis pyrifera P11B4 male)
GTCCGCATCGACATCCCGTTGATCCTGATCGTGGCGGTCGGTTTCGTCGA
CAACCCGAGTGACGCCGCCATCCTCGGCTTCGTCACCGACTTGTTGCTCG
ACACACTCCAGTTCGGCCCATTTGGGCTGTCGGCATTGGTCTATTGCCTG
GCCGGCTGGTTGATCGTGCTCGCCCGGCTGCGGGTGCTGCAGGCCGGGGC
CTCGTTCCGAACCGTGCAGGGGGCCACGATCGTCATGCTCGTCACCGCCG
CCACATGGGCGGCCGGCATGATCTTCGGGCTACGTGCCATTCCGCTCGAC
CCGACGGCAATCGCCAGGCTGGCACTGGTGGGGCTCGTCGGTGCAGTCCT
CGTCCACCCGATGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124400:2..367+

>mRNA_M-pyrifera_M_contig124400.4955.1 ID=mRNA_M-pyrifera_M_contig124400.4955.1|Name=mRNA_M-pyrifera_M_contig124400.4955.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig124400:2..367+ (Macrocystis pyrifera P11B4 male)
GTCCGCATCGACATCCCGTTGATCCTGATCGTGGCGGTCGGTTTCGTCGA
CAACCCGAGTGACGCCGCCATCCTCGGCTTCGTCACCGACTTGTTGCTCG
ACACACTCCAGTTCGGCCCATTTGGGCTGTCGGCATTGGTCTATTGCCTG
GCCGGCTGGTTGATCGTGCTCGCCCGGCTGCGGGTGCTGCAGGCCGGGGC
CTCGTTCCGAACCGTGCAGGGGGCCACGATCGTCATGCTCGTCACCGCCG
CCACATGGGCGGCCGGCATGATCTTCGGGCTACGTGCCATTCCGCTCGAC
CCGACGGCAATCGCCAGGCTGGCACTGGTGGGGCTCGTCGGTGCAGTCCT
CGTCCACCCGATGATCGTCCGCATCGACATCCCGTTGATCCTGATCGTGG
CGGTCGGTTTCGTCGACAACCCGAGTGACGCCGCCATCCTCGGCTTCGTC
ACCGACTTGTTGCTCGACACACTCCAGTTCGGCCCATTTGGGCTGTCGGC
ATTGGTCTATTGCCTGGCCGGCTGGTTGATCGTGCTCGCCCGGCTGCGGG
TGCTGCAGGCCGGGGCCTCGTTCCGAACCGTGCAGGGGGCCACGATCGTC
ATGCTCGTCACCGCCGCCACATGGGCGGCCGGCATGATCTTCGGGCTACG
TGCCATTCCGCTCGACCCGACGGCAATCGCCAGGCTGGCACTGGTGGGGC
TCGTCGGTGCAGTCCTCGTCCACCCGATGATC
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