mRNA_M-pyrifera_M_contig124388.4952.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI00145ABF38 (LacI family transcriptional regulator n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI00145ABF38) HSP 1 Score: 144 bits (362), Expect = 3.290e-39 Identity = 73/141 (51.77%), Postives = 94/141 (66.67%), Query Frame = 1
Query: 1 RNREAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
R R GW+ AM AG IVY +E GR G +L++ANP LTA+VCFNV+AA+GA++ R L +P D+S+VAIHD+ A+ L PLTTVAMPLFE+G RAVE+ D T GTS ID +PEL++R+S A P
Sbjct: 194 RRRLDGWKKAMAAAGIDHGAGQIVYCSSDMESGRTGCAQLLDANPELTAVVCFNVMAAVGAMKEIWSRNLDIPGDISVVAIHDVSFAEFLKAPLTTVAMPLFELGKRAVEIAIDGTRP-KGTSTIDNAEPELIMRASTAGP 333
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI001455E46A (LacI family transcriptional regulator n=1 Tax=Primorskyibacter sp. XY-301 TaxID=2562685 RepID=UPI001455E46A) HSP 1 Score: 121 bits (304), Expect = 1.170e-30 Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = 1
Query: 7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
R AGWR AM G +E+ +VY P + G G + L++ +P+LTA+VCFNVV+A+GAL+ + RGL VPDDLSI+AIHD++ A LS PL+ V+ PL EMG AVE V T+ + T+ P L++R+S + P
Sbjct: 196 RLAGWRQAM---GSHVNEDLVVYSAPHSDAGAEGTSELLDRHPDLTAIVCFNVVSAVGALREIRARGLNVPDDLSIIAIHDVKFAQDLSTPLSVVSTPLAEMGQLAVETVCSPPETSQSTTRVLTK-PTLLLRNSTSKP 330
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A7Z0WSK2_9PSEU (HTH lacI-type domain-containing protein n=1 Tax=Actinophytocola xinjiangensis TaxID=485602 RepID=A0A7Z0WSK2_9PSEU) HSP 1 Score: 116 bits (290), Expect = 1.410e-28 Identity = 65/141 (46.10%), Postives = 87/141 (61.70%), Query Frame = 1
Query: 7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPE--LVVRSSAASP 423
R GWR+ + AG AD +V G +++ G AG L+ P T +V NV+AAIGAL AA++ GLRVP+DLS++A HD+ A HL LT VAMP+ E+GA AV L+ ++ G D ++ RDPE LV R S A P
Sbjct: 195 RVRGWRETLTRAGLSADPGWLVAGGHTVDSGLAGMRELLAVRPAPTGVVVGNVLAAIGALTAAREAGLRVPEDLSVIAFHDVTYAGHLVPSLTAVAMPMRELGAAAVALLLERLGGADPRHVV-VRDPEPMLVARGSTAPP 334
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI001491F187 (LacI family transcriptional regulator n=1 Tax=unclassified Roseobacter TaxID=196798 RepID=UPI001491F187) HSP 1 Score: 115 bits (287), Expect = 3.740e-28 Identity = 64/142 (45.07%), Postives = 85/142 (59.86%), Query Frame = 1
Query: 4 NREAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASPLR 429
+R GWR M G ADE ++Y P+ +G L+ +P+LT LVCFN VAA+GAL+AA+ G VP DLS++AIHD++ A L VPLT V MPL EMG ++ ++ G T T PELV+R SA P+R
Sbjct: 195 DRMQGWRQEM---GGDADEVCVIYSGPTAPEGEVATHDLLTRHPDLTGLVCFNAVAAVGALRAARAMGRNVPGDLSVIAIHDLKFAGDLRVPLTVVRMPLAEMGRVSIGMIC-APNGARATIHRITTPPELVIRESATPPVR 332
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI000377AB82 (LacI family transcriptional regulator n=1 Tax=Actinopolymorpha alba TaxID=533267 RepID=UPI000377AB82) HSP 1 Score: 112 bits (279), Expect = 7.200e-27 Identity = 63/142 (44.37%), Postives = 86/142 (60.56%), Query Frame = 1
Query: 1 RNREAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGT-SIIDTRDPELVVRSSAASP 423
R+R+AGW DA+ EAG P + + YG E G G T L+ TA+ +V+AA+GAL AA+D GL VPDDLS++ HD LADH+ PL+ V +PL EMG AV ++ D G +++ T P LV+R+S A P
Sbjct: 194 RDRQAGWEDALKEAGLPVRHDLLGYGGAVPEAGYRGLTELLAHPRRPTAVFVGSVLAAVGALAAARDAGLSVPDDLSVIGYHDTWLADHVDPPLSVVRLPLDEMGREAVRILVDLIDGKPAQQALVTTPAPRLVLRASTAPP 335
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A0D8HMW0_RHOSX (Ribose operon repressor n=1 Tax=Rhodococcus sp. (strain AD45) TaxID=103808 RepID=A0A0D8HMW0_RHOSX) HSP 1 Score: 111 bits (277), Expect = 1.160e-26 Identity = 67/142 (47.18%), Postives = 84/142 (59.15%), Query Frame = 1
Query: 1 RNREAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASPL 426
R+R AGWR M G A + + S DG A +RL++ TA+V N +AA+G + AAQD G+ +P DLSIVAIHD+ELAD L LTTV MPL +G RAVELV G G II++ PELV+R S L
Sbjct: 197 RDRSAGWRQEMHTRGLEAPNGRLGWAGSSPADGYAAFSRLLKKGERPTAVVVSNAMAAVGVMAAAQDAGIVIPRDLSIVAIHDLELADFLRPALTTVRMPLEALGQRAVELVLGGDVG--GEVIINSPAPELVIRGSTGPAL 336
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A7J9XAH5_9ACTN (LacI family DNA-binding transcriptional regulator n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A7J9XAH5_9ACTN) HSP 1 Score: 110 bits (275), Expect = 2.200e-26 Identity = 63/144 (43.75%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 RNREAGWRDAMVEAG---EPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
R+R GWR A+ AG EP D ++ +P E G RL++ +P+LTA+V NV+AAIGAL AA DRG VP D+S++AIHD+ LA + LTTV +PL E+G + V+L++D T D + ++ P L+ R+S A P
Sbjct: 193 RDRLRGWRRALQAAGIKPEPTDWLWGLWNEP--ESGARVMGRLLDRSPDLTAVVVCNVIAAIGALGAASDRGYEVPRDISVLAIHDLPLARFVRPALTTVQLPLAELGRQGVDLLADSTRAADASLVVSEPAPALIPRASTAPP 334
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A6L7KM42_9RHOB (LacI family transcriptional regulator n=2 Tax=unclassified Boseongicola TaxID=2634418 RepID=A0A6L7KM42_9RHOB) HSP 1 Score: 109 bits (273), Expect = 4.180e-26 Identity = 64/141 (45.39%), Postives = 81/141 (57.45%), Query Frame = 1
Query: 7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASPLR 429
R GWR M G AD + + + P + +G A L+ P++T LVCFNVVAAIGA +AA GL VP DLS+V+IHDI+ A+ L VPLT V MPL E+G A V + + I+T PE V R S A P R
Sbjct: 196 RMKGWRSEM---GADADPSLVAHAGPFVTEGEAATRELLLLRPDITGLVCFNVVAAIGATRAASALGLDVPRDLSVVSIHDIKFAEDLKVPLTVVRMPLAELGQVATRTVCIEAPELPARIAIET-SPEFVQRQSTAEPGR 332
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A5C8UTM8_9MICO (LacI family transcriptional regulator n=1 Tax=Lacisediminihabitans profunda TaxID=2594790 RepID=A0A5C8UTM8_9MICO) HSP 1 Score: 108 bits (269), Expect = 1.680e-25 Identity = 66/139 (47.48%), Postives = 88/139 (63.31%), Query Frame = 1
Query: 7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
REA +R AM EAG +E + + DGRA A RL+E+ TALV N+ AA+G L DR LRVP D+SIVA+HD+ AD P+TTV MPL E+GA AV ++D +G+ T ++D+ P+LVVR S A+P
Sbjct: 196 REAAFRAAMAEAGLSPEEAWMTRLGYAGTDGRAAAVRLLESATLPTALVVANLNAALGVLAEIHDRDLRVPGDISIVAMHDVWYADATWPPITTVRMPLSELGAAAVVALADSGSGVIHT-VLDSPAPQLVVRRSTAAP 333
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI001789108E (LacI family transcriptional regulator n=1 Tax=Actinopolymorpha pittospori TaxID=648752 RepID=UPI001789108E) HSP 1 Score: 108 bits (269), Expect = 1.790e-25 Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1
Query: 7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
R++GWR A+ G P IV + E G A ++LI TA+ NVV ++GAL AA++ G+RVP+DLS++ +HD H S PLTTV +PL MG RAVELV G ++ PELVVR S ASP
Sbjct: 202 RQSGWRTALQRHGLPVRRKWIVEQDWNSEAGHAAMSKLISGTQRPTAVFVANVVVSVGALAAAREAGVRVPEDLSVIGLHDAWFVAHGSPPLTTVRLPLQAMGRRAVELVLSGAKAEPGGHLLSDPPPELVVRRSTASP 340 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124388.4952.1 >prot_M-pyrifera_M_contig124388.4952.1 ID=prot_M-pyrifera_M_contig124388.4952.1|Name=mRNA_M-pyrifera_M_contig124388.4952.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp MVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGback to top mRNA from alignment at M-pyrifera_M_contig124388:1..432+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124388.4952.1 ID=mRNA_M-pyrifera_M_contig124388.4952.1|Name=mRNA_M-pyrifera_M_contig124388.4952.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig124388:1..432+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124388:1..432+ >mRNA_M-pyrifera_M_contig124388.4952.1 ID=mRNA_M-pyrifera_M_contig124388.4952.1|Name=mRNA_M-pyrifera_M_contig124388.4952.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig124388:1..432+ (Macrocystis pyrifera P11B4 male)back to top |