mRNA_M-pyrifera_M_contig124388.4952.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124388.4952.1
Unique NamemRNA_M-pyrifera_M_contig124388.4952.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI00145ABF38 (LacI family transcriptional regulator n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI00145ABF38)

HSP 1 Score: 144 bits (362), Expect = 3.290e-39
Identity = 73/141 (51.77%), Postives = 94/141 (66.67%), Query Frame = 1
Query:    1 RNREAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
            R R  GW+ AM  AG       IVY    +E GR G  +L++ANP LTA+VCFNV+AA+GA++    R L +P D+S+VAIHD+  A+ L  PLTTVAMPLFE+G RAVE+  D T    GTS ID  +PEL++R+S A P
Sbjct:  194 RRRLDGWKKAMAAAGIDHGAGQIVYCSSDMESGRTGCAQLLDANPELTAVVCFNVMAAVGAMKEIWSRNLDIPGDISVVAIHDVSFAEFLKAPLTTVAMPLFELGKRAVEIAIDGTRP-KGTSTIDNAEPELIMRASTAGP 333          
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI001455E46A (LacI family transcriptional regulator n=1 Tax=Primorskyibacter sp. XY-301 TaxID=2562685 RepID=UPI001455E46A)

HSP 1 Score: 121 bits (304), Expect = 1.170e-30
Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
            R AGWR AM   G   +E+ +VY  P  + G  G + L++ +P+LTA+VCFNVV+A+GAL+  + RGL VPDDLSI+AIHD++ A  LS PL+ V+ PL EMG  AVE V         T+ + T+ P L++R+S + P
Sbjct:  196 RLAGWRQAM---GSHVNEDLVVYSAPHSDAGAEGTSELLDRHPDLTAIVCFNVVSAVGALREIRARGLNVPDDLSIIAIHDVKFAQDLSTPLSVVSTPLAEMGQLAVETVCSPPETSQSTTRVLTK-PTLLLRNSTSKP 330          
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A7Z0WSK2_9PSEU (HTH lacI-type domain-containing protein n=1 Tax=Actinophytocola xinjiangensis TaxID=485602 RepID=A0A7Z0WSK2_9PSEU)

HSP 1 Score: 116 bits (290), Expect = 1.410e-28
Identity = 65/141 (46.10%), Postives = 87/141 (61.70%), Query Frame = 1
Query:    7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPE--LVVRSSAASP 423
            R  GWR+ +  AG  AD   +V G  +++ G AG   L+   P  T +V  NV+AAIGAL AA++ GLRVP+DLS++A HD+  A HL   LT VAMP+ E+GA AV L+ ++  G D   ++  RDPE  LV R S A P
Sbjct:  195 RVRGWRETLTRAGLSADPGWLVAGGHTVDSGLAGMRELLAVRPAPTGVVVGNVLAAIGALTAAREAGLRVPEDLSVIAFHDVTYAGHLVPSLTAVAMPMRELGAAAVALLLERLGGADPRHVV-VRDPEPMLVARGSTAPP 334          
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI001491F187 (LacI family transcriptional regulator n=1 Tax=unclassified Roseobacter TaxID=196798 RepID=UPI001491F187)

HSP 1 Score: 115 bits (287), Expect = 3.740e-28
Identity = 64/142 (45.07%), Postives = 85/142 (59.86%), Query Frame = 1
Query:    4 NREAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASPLR 429
            +R  GWR  M   G  ADE  ++Y  P+  +G      L+  +P+LT LVCFN VAA+GAL+AA+  G  VP DLS++AIHD++ A  L VPLT V MPL EMG  ++ ++     G   T    T  PELV+R SA  P+R
Sbjct:  195 DRMQGWRQEM---GGDADEVCVIYSGPTAPEGEVATHDLLTRHPDLTGLVCFNAVAAVGALRAARAMGRNVPGDLSVIAIHDLKFAGDLRVPLTVVRMPLAEMGRVSIGMIC-APNGARATIHRITTPPELVIRESATPPVR 332          
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI000377AB82 (LacI family transcriptional regulator n=1 Tax=Actinopolymorpha alba TaxID=533267 RepID=UPI000377AB82)

HSP 1 Score: 112 bits (279), Expect = 7.200e-27
Identity = 63/142 (44.37%), Postives = 86/142 (60.56%), Query Frame = 1
Query:    1 RNREAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGT-SIIDTRDPELVVRSSAASP 423
            R+R+AGW DA+ EAG P   + + YG    E G  G T L+      TA+   +V+AA+GAL AA+D GL VPDDLS++  HD  LADH+  PL+ V +PL EMG  AV ++ D   G     +++ T  P LV+R+S A P
Sbjct:  194 RDRQAGWEDALKEAGLPVRHDLLGYGGAVPEAGYRGLTELLAHPRRPTAVFVGSVLAAVGALAAARDAGLSVPDDLSVIGYHDTWLADHVDPPLSVVRLPLDEMGREAVRILVDLIDGKPAQQALVTTPAPRLVLRASTAPP 335          
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A0D8HMW0_RHOSX (Ribose operon repressor n=1 Tax=Rhodococcus sp. (strain AD45) TaxID=103808 RepID=A0A0D8HMW0_RHOSX)

HSP 1 Score: 111 bits (277), Expect = 1.160e-26
Identity = 67/142 (47.18%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    1 RNREAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASPL 426
            R+R AGWR  M   G  A    + +   S  DG A  +RL++     TA+V  N +AA+G + AAQD G+ +P DLSIVAIHD+ELAD L   LTTV MPL  +G RAVELV     G  G  II++  PELV+R S    L
Sbjct:  197 RDRSAGWRQEMHTRGLEAPNGRLGWAGSSPADGYAAFSRLLKKGERPTAVVVSNAMAAVGVMAAAQDAGIVIPRDLSIVAIHDLELADFLRPALTTVRMPLEALGQRAVELVLGGDVG--GEVIINSPAPELVIRGSTGPAL 336          
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A7J9XAH5_9ACTN (LacI family DNA-binding transcriptional regulator n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A7J9XAH5_9ACTN)

HSP 1 Score: 110 bits (275), Expect = 2.200e-26
Identity = 63/144 (43.75%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 RNREAGWRDAMVEAG---EPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
            R+R  GWR A+  AG   EP D    ++ +P  E G     RL++ +P+LTA+V  NV+AAIGAL AA DRG  VP D+S++AIHD+ LA  +   LTTV +PL E+G + V+L++D T   D + ++    P L+ R+S A P
Sbjct:  193 RDRLRGWRRALQAAGIKPEPTDWLWGLWNEP--ESGARVMGRLLDRSPDLTAVVVCNVIAAIGALGAASDRGYEVPRDISVLAIHDLPLARFVRPALTTVQLPLAELGRQGVDLLADSTRAADASLVVSEPAPALIPRASTAPP 334          
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A6L7KM42_9RHOB (LacI family transcriptional regulator n=2 Tax=unclassified Boseongicola TaxID=2634418 RepID=A0A6L7KM42_9RHOB)

HSP 1 Score: 109 bits (273), Expect = 4.180e-26
Identity = 64/141 (45.39%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASPLR 429
            R  GWR  M   G  AD + + +  P + +G A    L+   P++T LVCFNVVAAIGA +AA   GL VP DLS+V+IHDI+ A+ L VPLT V MPL E+G  A   V  +   +     I+T  PE V R S A P R
Sbjct:  196 RMKGWRSEM---GADADPSLVAHAGPFVTEGEAATRELLLLRPDITGLVCFNVVAAIGATRAASALGLDVPRDLSVVSIHDIKFAEDLKVPLTVVRMPLAELGQVATRTVCIEAPELPARIAIET-SPEFVQRQSTAEPGR 332          
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: A0A5C8UTM8_9MICO (LacI family transcriptional regulator n=1 Tax=Lacisediminihabitans profunda TaxID=2594790 RepID=A0A5C8UTM8_9MICO)

HSP 1 Score: 108 bits (269), Expect = 1.680e-25
Identity = 66/139 (47.48%), Postives = 88/139 (63.31%), Query Frame = 1
Query:    7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
            REA +R AM EAG   +E  +     +  DGRA A RL+E+    TALV  N+ AA+G L    DR LRVP D+SIVA+HD+  AD    P+TTV MPL E+GA AV  ++D  +G+  T ++D+  P+LVVR S A+P
Sbjct:  196 REAAFRAAMAEAGLSPEEAWMTRLGYAGTDGRAAAVRLLESATLPTALVVANLNAALGVLAEIHDRDLRVPGDISIVAMHDVWYADATWPPITTVRMPLSELGAAAVVALADSGSGVIHT-VLDSPAPQLVVRRSTAAP 333          
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Match: UPI001789108E (LacI family transcriptional regulator n=1 Tax=Actinopolymorpha pittospori TaxID=648752 RepID=UPI001789108E)

HSP 1 Score: 108 bits (269), Expect = 1.790e-25
Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    7 REAGWRDAMVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIGALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVELVSDKTTGIDGTSIIDTRDPELVVRSSAASP 423
            R++GWR A+   G P     IV    + E G A  ++LI      TA+   NVV ++GAL AA++ G+RVP+DLS++ +HD     H S PLTTV +PL  MG RAVELV        G  ++    PELVVR S ASP
Sbjct:  202 RQSGWRTALQRHGLPVRRKWIVEQDWNSEAGHAAMSKLISGTQRPTAVFVANVVVSVGALAAAREAGVRVPEDLSVIGLHDAWFVAHGSPPLTTVRLPLQAMGRRAVELVLSGAKAEPGGHLLSDPPPELVVRRSTASP 340          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124388.4952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00145ABF383.290e-3951.77LacI family transcriptional regulator n=1 Tax=Nitr... [more]
UPI001455E46A1.170e-3046.76LacI family transcriptional regulator n=1 Tax=Prim... [more]
A0A7Z0WSK2_9PSEU1.410e-2846.10HTH lacI-type domain-containing protein n=1 Tax=Ac... [more]
UPI001491F1873.740e-2845.07LacI family transcriptional regulator n=1 Tax=uncl... [more]
UPI000377AB827.200e-2744.37LacI family transcriptional regulator n=1 Tax=Acti... [more]
A0A0D8HMW0_RHOSX1.160e-2647.18Ribose operon repressor n=1 Tax=Rhodococcus sp. (s... [more]
A0A7J9XAH5_9ACTN2.200e-2643.75LacI family DNA-binding transcriptional regulator ... [more]
A0A6L7KM42_9RHOB4.180e-2645.39LacI family transcriptional regulator n=2 Tax=uncl... [more]
A0A5C8UTM8_9MICO1.680e-2547.48LacI family transcriptional regulator n=1 Tax=Laci... [more]
UPI001789108E1.790e-2543.88LacI family transcriptional regulator n=1 Tax=Acti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124388contigM-pyrifera_M_contig124388:1..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.1
Seed ortholog evalue6.8e-18
Seed eggNOG ortholog1120950.KB892753_gene6080
KEGG koko:K02529
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Periplasmic binding protein-like domain
EggNOG OGs2GJRG@201174,4DQYU@85009,COG1609@1,COG1609@2
COG Functional cat.K
Best tax levelPropionibacteriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size432
Cds size402
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.853112-UTR-M-pyrifera_M_contig124388:0..301622815760.853112-UTR-M-pyrifera_M_contig124388:0..30Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124388 1..30 +
1692277556.8150961-UTR-M-pyrifera_M_contig124388:0..301692277556.8150961-UTR-M-pyrifera_M_contig124388:0..30Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124388 1..30 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.8656213-CDS-M-pyrifera_M_contig124388:30..4321622815760.8656213-CDS-M-pyrifera_M_contig124388:30..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124388 31..432 +
1692277556.827182-CDS-M-pyrifera_M_contig124388:30..4321692277556.827182-CDS-M-pyrifera_M_contig124388:30..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124388 31..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124388.4952.1prot_M-pyrifera_M_contig124388.4952.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124388 31..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124388.4952.1

>prot_M-pyrifera_M_contig124388.4952.1 ID=prot_M-pyrifera_M_contig124388.4952.1|Name=mRNA_M-pyrifera_M_contig124388.4952.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MVEAGEPADENSIVYGQPSIEDGRAGATRLIEANPNLTALVCFNVVAAIG
ALQAAQDRGLRVPDDLSIVAIHDIELADHLSVPLTTVAMPLFEMGARAVE
LVSDKTTGIDGTSIIDTRDPELVVRSSAASPLR*
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mRNA from alignment at M-pyrifera_M_contig124388:1..432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124388.4952.1 ID=mRNA_M-pyrifera_M_contig124388.4952.1|Name=mRNA_M-pyrifera_M_contig124388.4952.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig124388:1..432+ (Macrocystis pyrifera P11B4 male)
CGCAATCGTGAGGCCGGGTGGAGAGATGCGATGGTTGAGGCCGGAGAACC GGCGGATGAAAACAGCATCGTCTATGGCCAACCCTCCATCGAGGACGGAC GCGCCGGCGCAACGCGGTTGATCGAAGCCAATCCAAACCTGACGGCGCTT GTGTGTTTCAATGTGGTGGCTGCCATCGGTGCGTTGCAGGCGGCGCAGGA CAGGGGGCTGCGCGTACCGGACGACCTTTCCATTGTGGCGATTCATGATA TCGAACTGGCGGACCATCTCAGCGTTCCGCTGACAACGGTCGCCATGCCG CTCTTCGAGATGGGTGCCCGGGCCGTCGAACTTGTCAGCGACAAGACCAC CGGGATCGACGGAACATCCATTATCGATACCCGCGATCCCGAACTGGTCG TTCGGTCCAGTGCTGCTTCACCGTTGCGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124388:1..432+

>mRNA_M-pyrifera_M_contig124388.4952.1 ID=mRNA_M-pyrifera_M_contig124388.4952.1|Name=mRNA_M-pyrifera_M_contig124388.4952.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig124388:1..432+ (Macrocystis pyrifera P11B4 male)
ATGGTTGAGGCCGGAGAACCGGCGGATGAAAACAGCATCGTCTATGGCCA
ACCCTCCATCGAGGACGGACGCGCCGGCGCAACGCGGTTGATCGAAGCCA
ATCCAAACCTGACGGCGCTTGTGTGTTTCAATGTGGTGGCTGCCATCGGT
GCGTTGCAGGCGGCGCAGGACAGGGGGCTGCGCGTACCGGACGACCTTTC
CATTGTGGCGATTCATGATATCGAACTGGCGGACCATCTCAGCGTTCCGC
TGACAACGGTCGCCATGCCGCTCTTCGAGATGGGTGCCCGGGCCGTCGAA
CTTGTCAGCGACAAGACCACCGGGATCGACGGAACATCCATTATCGATAC
CCGCGATCCCGAACTGGTCGTTCGGTCCAGTGCTGCTTCACCGTTGCGTT
GAATGGTTGAGGCCGGAGAACCGGCGGATGAAAACAGCATCGTCTATGGC
CAACCCTCCATCGAGGACGGACGCGCCGGCGCAACGCGGTTGATCGAAGC
CAATCCAAACCTGACGGCGCTTGTGTGTTTCAATGTGGTGGCTGCCATCG
GTGCGTTGCAGGCGGCGCAGGACAGGGGGCTGCGCGTACCGGACGACCTT
TCCATTGTGGCGATTCATGATATCGAACTGGCGGACCATCTCAGCGTTCC
GCTGACAACGGTCGCCATGCCGCTCTTCGAGATGGGTGCCCGGGCCGTCG
AACTTGTCAGCGACAAGACCACCGGGATCGACGGAACATCCATTATCGAT
ACCCGCGATCCCGAACTGGTCGTTCGGTCCAGTGCTGCTTCACCGTTGCG
TTGA
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