mRNA_M-pyrifera_M_contig124281.4947.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A7K1Z813_9ACTN (Branched-chain amino acid ABC transporter permease n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z813_9ACTN) HSP 1 Score: 125 bits (313), Expect = 1.550e-32 Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPD-GLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
+YGSIIGAL+ITA+PRFI+G I D G+PGVA K++D GLV+ +SLNVIIYGFLIALFLLVE RGLAGIW RIR+YFSTWPFSY
Sbjct: 296 IYGSIIGALVITALPRFIDG-------ISADYGVPGVAAKSTDSGLVSVASLNVIIYGFLIALFLLVEHRGLAGIWVRIRNYFSTWPFSY 378
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A2E6VLG1_9ACTN (Branched-chain amino acid ABC transporter permease n=10 Tax=root TaxID=1 RepID=A0A2E6VLG1_9ACTN) HSP 1 Score: 89.7 bits (221), Expect = 3.020e-19 Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSD-PGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
++GSIIGA ++ ++PRF+E D LPGV+ G+++ SSLN IIYG LIA FLL+E RG+AGIW R+++YF TWPFSY
Sbjct: 296 IHGSIIGAFVLGSLPRFVENISRDYD------LPGVSGDQGGIGGMISISSLNHIIYGILIAAFLLLEPRGIAGIWMRVKTYFKTWPFSY 379
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A076MH80_AMYME (Branched chain amino acid ABC superfamily ATP binding cassette transporter, membrane protein n=8 Tax=Pseudonocardiaceae TaxID=2070 RepID=A0A076MH80_AMYME) HSP 1 Score: 85.9 bits (211), Expect = 7.050e-18 Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
++GS++GAL + A+P I+ + D +PGV D G ++ +LN I+G LI LFL++E RGLAGIW RI++YF WPFSY
Sbjct: 285 IFGSVLGALFVGALPALIDR--------YSDVIPGVQTSVGDSGFISVFALNQAIFGLLIVLFLVLEPRGLAGIWLRIKTYFKAWPFSY 365
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A2E8E9P9_9BACT (Branched-chain amino acid ABC transporter permease n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8E9P9_9BACT) HSP 1 Score: 84.3 bits (207), Expect = 2.850e-17 Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAV-KNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
V+GSIIGAL + A+PR I+G D LPGV K G+++ SSLN +I+G LIA FLL+E RG+AGI R+R+YF WPFSY
Sbjct: 296 VHGSIIGALFVGALPRVIDGLAKDYD------LPGVGGDKGGLEGILSVSSLNQVIFGLLIAGFLLLEPRGIAGILARVRAYFKAWPFSY 379
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: H5XC00_9PSEU (ABC-type branched-chain amino acid transport system, permease component n=2 Tax=Saccharomonospora TaxID=1851 RepID=H5XC00_9PSEU) HSP 1 Score: 82.4 bits (202), Expect = 1.300e-16 Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
++G+++GA+ + A+P I+ + D +PGV G ++ +LN ++G LI LFL++E RGLAGIW R+++YF TWPFSY
Sbjct: 284 IFGAVLGAVFVGALPALIDR--------YSDAIPGVRTSVGGDGFISVFALNQALFGVLIVLFLVLEPRGLAGIWLRVKTYFKTWPFSY 364
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: UPI001670DE83 (branched-chain amino acid ABC transporter permease n=1 Tax=Actinokineospora fastidiosa TaxID=1816 RepID=UPI001670DE83) HSP 1 Score: 82.4 bits (202), Expect = 1.310e-16 Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
++G+++GA+ + A+P I+ + D +PGV G ++ +LN I+G LI +FL+VE RGLAGIW RI++YF TWPFSY
Sbjct: 285 IFGAVLGAIFVGALPALIDR--------YSDVIPGVQTSVGGDGFISVFALNQAIFGVLIVVFLVVEPRGLAGIWLRIKTYFRTWPFSY 365
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A1I5TGH5_9PSEU (Branched-chain amino acid transport system permease protein n=1 Tax=Amycolatopsis arida TaxID=587909 RepID=A0A1I5TGH5_9PSEU) HSP 1 Score: 82.0 bits (201), Expect = 1.820e-16 Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
V+GS++GA+ + A+P I+ + +PGV GL++ +LN I+G LI LFL++E RGLAGIW R+++YF WPFSY
Sbjct: 285 VFGSVLGAIFVGALPALIDR--------YSAAIPGVRTSVGGDGLISVFALNQAIFGLLIVLFLVLEPRGLAGIWLRVKNYFKAWPFSY 365
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A7G7MBZ2_9PSEU (Branched-chain amino acid ABC transporter permease n=1 Tax=Pseudonocardia sp. CGMCC 4.1532 TaxID=2761535 RepID=A0A7G7MBZ2_9PSEU) HSP 1 Score: 82.0 bits (201), Expect = 2.190e-16 Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
V G I+GAL + A+P I+ + D +PGV+ G ++ S+LN ++G LI +FL+VE RGLAGIW R+++YF++WPFSY
Sbjct: 319 VMGPILGALFVGALPALIDR--------YSDVIPGVSDGVGSDGFISVSALNQAVFGLLIVVFLVVEPRGLAGIWLRVKAYFTSWPFSY 399
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A4V2ERQ2_9PSEU (Amino acid/amide ABC transporter membrane protein 2 (HAAT family) n=1 Tax=Herbihabitans rhizosphaerae TaxID=1872711 RepID=A0A4V2ERQ2_9PSEU) HSP 1 Score: 80.9 bits (198), Expect = 4.920e-16 Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
++GS++GA+ + A+P I+ + + LPGV G ++ +LN I+G LI LFL++E RGLAGIW RI++YF WPFSY
Sbjct: 289 IFGSVLGAIFVGALPALIDR--------YSEYLPGVQTGVGGEGFISVFALNQAIFGLLIVLFLVLEPRGLAGIWLRIKAYFKAWPFSY 369
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A7X7S5C2_9ACTO (Branched-chain amino acid ABC transporter permease n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A7X7S5C2_9ACTO) HSP 1 Score: 78.6 bits (192), Expect = 1.280e-15 Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
+ GS+IGA + MPR +E P L V GL+T L I++G LI LFL++E RGL G+W RIR+YF+TWPFSY
Sbjct: 185 ISGSLIGAAFVVLMPRLLEWLAPWLPF----------VSTGSGGLITIFQLQSILFGLLIVLFLILEPRGLFGLWHRIRTYFTTWPFSY 263 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124281.4947.1 >prot_M-pyrifera_M_contig124281.4947.1 ID=prot_M-pyrifera_M_contig124281.4947.1|Name=mRNA_M-pyrifera_M_contig124281.4947.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSback to top mRNA from alignment at M-pyrifera_M_contig124281:250..519- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124281.4947.1 ID=mRNA_M-pyrifera_M_contig124281.4947.1|Name=mRNA_M-pyrifera_M_contig124281.4947.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig124281:250..519- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124281:250..519- >mRNA_M-pyrifera_M_contig124281.4947.1 ID=mRNA_M-pyrifera_M_contig124281.4947.1|Name=mRNA_M-pyrifera_M_contig124281.4947.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig124281:250..519- (Macrocystis pyrifera P11B4 male)back to top |