mRNA_M-pyrifera_M_contig124248.4940.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124248.4940.1
Unique NamemRNA_M-pyrifera_M_contig124248.4940.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: A0A2D7E0G6_9BACT (HD domain-containing protein n=2 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D7E0G6_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 9.720e-13
Identity = 32/44 (72.73%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MAEDVVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVAS 132
            M +DVV+KAA +AKAAHESIDQRRK+T+ PYIVHP+AVA+TV++
Sbjct:    1 MTDDVVTKAAVFAKAAHESIDQRRKFTNEPYIVHPQAVAQTVST 44
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: A0A3D3ZYP2_9PLAN (GTP pyrophosphokinase (Fragment) n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D3ZYP2_9PLAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.910e-10
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   13 VVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVAS 132
            V+ +AA YAKAAHES+DQRRK+T+ PYIVHP AVA  VAS
Sbjct:    4 VIRRAAEYAKAAHESVDQRRKFTNRPYIVHPLAVAEIVAS 43
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: A0A2E4M4Z2_9BACT (HD domain-containing protein n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2E4M4Z2_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.410e-9
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   13 VVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVAS 132
            V+ +AA YAKAAHES+DQRRK+T+ PYIVHP AVA  VAS
Sbjct:    4 VIRRAAEYAKAAHESVDQRRKFTNRPYIVHPLAVAEIVAS 43
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: A0A2E6WCC8_9BACT (HDc domain-containing protein n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2E6WCC8_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.850e-9
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   16 VSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVAS 132
            + +AA YAKAAHESIDQRRK+T+ PY++HP AVA+ VAS
Sbjct:    5 IRRAADYAKAAHESIDQRRKFTNEPYVIHPTAVAKIVAS 43
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: A0A1X0WBX7_9GAMM (GTP pyrophosphokinase n=1 Tax=Rouxiella badensis TaxID=1646377 RepID=A0A1X0WBX7_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 4.630e-8
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 MAEDVVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVAS 132
            M   +V KA  YA  AH SIDQRRKYT+ PYIVHPEAVA  V S
Sbjct:    1 MMTSLVDKARRYASKAHASIDQRRKYTNDPYIVHPEAVANIVGS 44
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: UPI001C932022 (HD domain-containing protein n=1 Tax=Gluconacetobacter entanii TaxID=108528 RepID=UPI001C932022)

HSP 1 Score: 54.7 bits (130), Expect = 7.070e-8
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   10 DVVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTV 126
            D+ S+AAA+A  AH  I+QRRKYTD PYIVHP  VARTV
Sbjct:    2 DLTSRAAAFAAVAHGKINQRRKYTDEPYIVHPWRVARTV 40
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: W1NAV2_9GAMM (Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Halomonas huangheensis TaxID=1178482 RepID=W1NAV2_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 7.450e-8
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   10 DVVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVA 129
            D+V +A  +A AAH +IDQRRKY+ APYI HPEAVAR VA
Sbjct:    4 DLVERARLFATAAHAAIDQRRKYSGAPYIEHPEAVARLVA 43
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: A0A3S4DGF6_SEROD (Bifunctional (P)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase n=1 Tax=Serratia odorifera TaxID=618 RepID=A0A3S4DGF6_SEROD)

HSP 1 Score: 52.8 bits (125), Expect = 8.890e-8
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 MAEDVVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVAS 132
            M+  +V +A  YA  AH +IDQRRKYT+APYIVHP+AV   V S
Sbjct:    1 MSSTLVERARRYATKAHAAIDQRRKYTNAPYIVHPQAVVEIVRS 44
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: A0A1X0VZ48_9GAMM (GTP pyrophosphokinase n=3 Tax=Rouxiella TaxID=1565532 RepID=A0A1X0VZ48_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 8.940e-8
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   13 VVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVAS 132
            +V KA  YA  AH SI+QRRKYT+ PYIVHPEAVA  VAS
Sbjct:    4 LVDKARRYASKAHASINQRRKYTNDPYIVHPEAVANIVAS 43
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BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Match: UPI0005D30319 (HD domain-containing protein n=1 Tax=Rouxiella chamberiensis TaxID=1513468 RepID=UPI0005D30319)

HSP 1 Score: 54.7 bits (130), Expect = 9.240e-8
Identity = 28/41 (68.29%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   10 DVVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVAS 132
            D V KA  YA  AH SIDQRRKYT  PYIVHPEAV   V+S
Sbjct:    3 DFVDKARRYASKAHASIDQRRKYTHDPYIVHPEAVVNIVSS 43
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124248.4940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7E0G6_9BACT9.720e-1372.73HD domain-containing protein n=2 Tax=Rhodopirellul... [more]
A0A3D3ZYP2_9PLAN2.910e-1072.50GTP pyrophosphokinase (Fragment) n=2 Tax=Planctomy... [more]
A0A2E4M4Z2_9BACT1.410e-972.50HD domain-containing protein n=1 Tax=Rhodopirellul... [more]
A0A2E6WCC8_9BACT2.850e-969.23HDc domain-containing protein n=1 Tax=Rhodopirellu... [more]
A0A1X0WBX7_9GAMM4.630e-865.91GTP pyrophosphokinase n=1 Tax=Rouxiella badensis T... [more]
UPI001C9320227.070e-869.23HD domain-containing protein n=1 Tax=Gluconacetoba... [more]
W1NAV2_9GAMM7.450e-867.50Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohyd... [more]
A0A3S4DGF6_SEROD8.890e-859.09Bifunctional (P)ppGpp synthetase II/ guanosine-3',... [more]
A0A1X0VZ48_9GAMM8.940e-870.00GTP pyrophosphokinase n=3 Tax=Rouxiella TaxID=1565... [more]
UPI0005D303199.240e-868.29HD domain-containing protein n=1 Tax=Rouxiella cha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124248contigM-pyrifera_M_contig124248:388..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.0414503-CDS-M-pyrifera_M_contig124248:387..5191622815760.0414503-CDS-M-pyrifera_M_contig124248:387..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124248 388..519 +
1692277556.4303703-CDS-M-pyrifera_M_contig124248:387..5191692277556.4303703-CDS-M-pyrifera_M_contig124248:387..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124248 388..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124248.4940.1prot_M-pyrifera_M_contig124248.4940.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124248 388..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124248.4940.1

>prot_M-pyrifera_M_contig124248.4940.1 ID=prot_M-pyrifera_M_contig124248.4940.1|Name=mRNA_M-pyrifera_M_contig124248.4940.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
MAEDVVSKAAAYAKAAHESIDQRRKYTDAPYIVHPEAVARTVAS
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mRNA from alignment at M-pyrifera_M_contig124248:388..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124248.4940.1 ID=mRNA_M-pyrifera_M_contig124248.4940.1|Name=mRNA_M-pyrifera_M_contig124248.4940.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig124248:388..519+ (Macrocystis pyrifera P11B4 male)
ATGGCTGAGGATGTGGTCTCCAAAGCAGCGGCATATGCAAAGGCTGCACA
CGAAAGCATTGACCAGCGCCGTAAGTACACCGACGCTCCGTACATTGTCC
ATCCGGAAGCTGTTGCGAGAACAGTTGCCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124248:388..519+

>mRNA_M-pyrifera_M_contig124248.4940.1 ID=mRNA_M-pyrifera_M_contig124248.4940.1|Name=mRNA_M-pyrifera_M_contig124248.4940.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig124248:388..519+ (Macrocystis pyrifera P11B4 male)
ATGGCTGAGGATGTGGTCTCCAAAGCAGCGGCATATGCAAAGGCTGCACA
CGAAAGCATTGACCAGCGCCGTAAGTACACCGACGCTCCGTACATTGTCC
ATCCGGAAGCTGTTGCGAGAACAGTTGCCTCCATGGCTGAGGATGTGGTC
TCCAAAGCAGCGGCATATGCAAAGGCTGCACACGAAAGCATTGACCAGCG
CCGTAAGTACACCGACGCTCCGTACATTGTCCATCCGGAAGCTGTTGCGA
GAACAGTTGCCTCC
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