mRNA_M-pyrifera_M_contig124224.4936.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124224.4936.1
Unique NamemRNA_M-pyrifera_M_contig124224.4936.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: E4URH1_ARTGP (Structural maintenance of chromosomes protein n=12 Tax=Arthrodermataceae TaxID=34384 RepID=E4URH1_ARTGP)

HSP 1 Score: 72.4 bits (176), Expect = 1.690e-13
Identity = 29/55 (52.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTFMPLNRL+ R+S + R +D +P++E+++ D RY+PA QQVFGRT++C ++ +A
Sbjct:  576 VTFMPLNRLKPRASNIPRASDTIPMIEKLQYDPRYEPAFQQVFGRTIICPNLQIA 630
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BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: A0A080WKH4_TRIRC (Chromosome segregation protein sudA n=1 Tax=Trichophyton rubrum (strain ATCC MYA-4607 / CBS 118892) TaxID=559305 RepID=A0A080WKH4_TRIRC)

HSP 1 Score: 70.9 bits (172), Expect = 5.880e-13
Identity = 28/55 (50.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTFMPLNRL+ R+S + R +D +P++E+++ D +Y+PA QQVFGRT++C ++ +A
Sbjct:   77 VTFMPLNRLKPRASNIPRASDTIPMIEKLQYDPQYEPAFQQVFGRTIICPNLQIA 131
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BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: A0A022XMD7_TRISD (Chromosome segregation protein sudA n=1 Tax=Trichophyton soudanense CBS 452.61 TaxID=1215331 RepID=A0A022XMD7_TRISD)

HSP 1 Score: 70.9 bits (172), Expect = 5.880e-13
Identity = 28/55 (50.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTFMPLNRL+ R+S + R +D +P++E+++ D +Y+PA QQVFGRT++C ++ +A
Sbjct:   77 VTFMPLNRLKPRASNIPRASDTIPMIEKLQYDPQYEPAFQQVFGRTIICPNLQIA 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: UPI00077B0A3B (structural maintenance of chromosomes protein 3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B0A3B)

HSP 1 Score: 64.7 bits (156), Expect = 8.730e-11
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTFMPLNRLQS+  E   + D LP++ ++R D  ++PA+  VFG+TL+C +M+VA
Sbjct:  527 VTFMPLNRLQSKEHEYPSSPDALPMINKLRFDEAFRPAMNLVFGKTLICRNMEVA 581
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BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: A0A6A6GFA2_9PEZI (Structural maintenance of chromosomes protein n=2 Tax=Elsinoe TaxID=40996 RepID=A0A6A6GFA2_9PEZI)

HSP 1 Score: 64.7 bits (156), Expect = 8.750e-11
Identity = 27/55 (49.09%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTF+PLNR+++R++ L +  D +PL+ +++ DA Y+PA QQVFG+T++C S+ VA
Sbjct:  576 VTFIPLNRIRARATNLPKANDAVPLLSKMKYDAVYEPAFQQVFGKTIVCPSLQVA 630
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BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: UPI001CF51BD7 (structural maintenance of chromosomes protein 3-like isoform X1 n=3 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF51BD7)

HSP 1 Score: 64.7 bits (156), Expect = 8.750e-11
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTFMPLNRLQS+  E   + D LP++ ++R D  ++PA+  VFG+TL+C +M+VA
Sbjct:  578 VTFMPLNRLQSKEHEYPSSPDALPMINKLRFDEAFRPAMNLVFGKTLICRNMEVA 632
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BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: UPI001EB0A468 (structural maintenance of chromosomes protein 3-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EB0A468)

HSP 1 Score: 64.3 bits (155), Expect = 1.200e-10
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTFMPLNRL SR +    T D +P++++I+ + ++ PA++ VFG+TL+C SM+VA
Sbjct:  585 VTFMPLNRLDSRDTIYPDTQDAIPMIQKIKYEMKFDPAIKHVFGKTLVCRSMEVA 639
[Close]
BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: B6Q4Z0_TALMQ (Structural maintenance of chromosomes protein n=9 Tax=Eurotiales TaxID=5042 RepID=B6Q4Z0_TALMQ)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 25/55 (45.45%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTFMPLNRL+ R + + + +D +P++E+++ D +Y+ A QQVFG+T++C ++ VA
Sbjct:  576 VTFMPLNRLKPRPTNVPKASDTIPMIEKLQYDPQYEKAFQQVFGKTIICPNLQVA 630
[Close]
BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: A0A2K1R3H2_9PEZI (Structural maintenance of chromosomes protein n=1 Tax=Sphaceloma murrayae TaxID=2082308 RepID=A0A2K1R3H2_9PEZI)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 25/55 (45.45%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTF+PLNR+++R++ L R AD +P++ +++ D R++PA QQVFG+T++C  + +A
Sbjct:  576 VTFIPLNRVRARATNLPRAADAVPILLKMKYDERFEPAFQQVFGKTIVCPELQIA 630
[Close]
BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Match: B6K8E1_SCHJY (Structural maintenance of chromosomes protein n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K8E1_SCHJY)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 VTFMPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMDVA 165
            VTFMPLN+L  +       +D LPLV++++ DA+++PA  QVFG+T++C S+DVA
Sbjct:  572 VTFMPLNKLHPKPVNYPEASDALPLVKRLKFDAKFEPAFMQVFGKTVVCPSLDVA 626
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124224.4936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E4URH1_ARTGP1.690e-1352.73Structural maintenance of chromosomes protein n=12... [more]
A0A080WKH4_TRIRC5.880e-1350.91Chromosome segregation protein sudA n=1 Tax=Tricho... [more]
A0A022XMD7_TRISD5.880e-1350.91Chromosome segregation protein sudA n=1 Tax=Tricho... [more]
UPI00077B0A3B8.730e-1150.91structural maintenance of chromosomes protein 3-li... [more]
A0A6A6GFA2_9PEZI8.750e-1149.09Structural maintenance of chromosomes protein n=2 ... [more]
UPI001CF51BD78.750e-1150.91structural maintenance of chromosomes protein 3-li... [more]
UPI001EB0A4681.200e-1049.09structural maintenance of chromosomes protein 3-li... [more]
B6Q4Z0_TALMQ2.230e-1045.45Structural maintenance of chromosomes protein n=9 ... [more]
A0A2K1R3H2_9PEZI2.230e-1045.45Structural maintenance of chromosomes protein n=1 ... [more]
B6K8E1_SCHJY2.230e-1049.09Structural maintenance of chromosomes protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124224contigM-pyrifera_M_contig124224:355..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score66.6
Seed ortholog evalue3.8e-09
Seed eggNOG ortholog63402.XP_003174876.1
Preferred nameSMC3
KEGG koko:K06669
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008278,GO:0009653,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030892,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034293,GO:0034502,GO:0034613,GO:0034641,GO:0034990,GO:0035825,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043934,GO:0043935,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045144,GO:0046483,GO:0048285,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051641,GO:0051704,GO:0051716,GO:0061775,GO:0061780,GO:0061982,GO:0061983,GO:0062022,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070193,GO:0070601,GO:0070727,GO:0071168,GO:0071704,GO:0071840,GO:0071921,GO:0071960,GO:0071962,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990414
EggNOG free text desc.Structural maintenance of chromosomes protein
EggNOG OGs20AHE@147545,38BNB@33154,3AZCX@33183,3FVIR@34384,3NWDY@4751,3QPAP@4890,COG1196@1,KOG0964@2759
Ec32 ortholog descriptionsimilar to Structural maintenance of chromosome 3
Ec32 orthologEc-21_005610.1
COG Functional cat.D
Best tax levelArthrodermataceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00535,ko03036
Exons1
Model size165
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.7858286-UTR-M-pyrifera_M_contig124224:354..3631622815759.7858286-UTR-M-pyrifera_M_contig124224:354..363Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124224 355..363 +
1692277556.28002-UTR-M-pyrifera_M_contig124224:354..3631692277556.28002-UTR-M-pyrifera_M_contig124224:354..363Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124224 355..363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.8010576-CDS-M-pyrifera_M_contig124224:363..5191622815759.8010576-CDS-M-pyrifera_M_contig124224:363..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124224 364..519 +
1692277556.2899039-CDS-M-pyrifera_M_contig124224:363..5191692277556.2899039-CDS-M-pyrifera_M_contig124224:363..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124224 364..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124224.4936.1prot_M-pyrifera_M_contig124224.4936.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124224 364..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124224.4936.1

>prot_M-pyrifera_M_contig124224.4936.1 ID=prot_M-pyrifera_M_contig124224.4936.1|Name=mRNA_M-pyrifera_M_contig124224.4936.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
MPLNRLQSRSSELVRTADVLPLVEQIRTDARYQPAVQQVFGRTLLCSSMD
VA
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mRNA from alignment at M-pyrifera_M_contig124224:355..519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124224.4936.1 ID=mRNA_M-pyrifera_M_contig124224.4936.1|Name=mRNA_M-pyrifera_M_contig124224.4936.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig124224:355..519+ (Macrocystis pyrifera P11B4 male)
GTGACGTTCATGCCCCTGAACCGACTCCAGAGCAGGAGTTCTGAGTTAGT
GCGCACTGCAGACGTACTCCCGCTGGTCGAGCAGATCCGCACGGACGCGA
GGTACCAGCCGGCGGTGCAGCAGGTGTTTGGCAGGACGCTGCTGTGCAGC
AGCATGGACGTGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124224:355..519+

>mRNA_M-pyrifera_M_contig124224.4936.1 ID=mRNA_M-pyrifera_M_contig124224.4936.1|Name=mRNA_M-pyrifera_M_contig124224.4936.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig124224:355..519+ (Macrocystis pyrifera P11B4 male)
ATGCCCCTGAACCGACTCCAGAGCAGGAGTTCTGAGTTAGTGCGCACTGC
AGACGTACTCCCGCTGGTCGAGCAGATCCGCACGGACGCGAGGTACCAGC
CGGCGGTGCAGCAGGTGTTTGGCAGGACGCTGCTGTGCAGCAGCATGGAC
GTGGCCATGCCCCTGAACCGACTCCAGAGCAGGAGTTCTGAGTTAGTGCG
CACTGCAGACGTACTCCCGCTGGTCGAGCAGATCCGCACGGACGCGAGGT
ACCAGCCGGCGGTGCAGCAGGTGTTTGGCAGGACGCTGCTGTGCAGCAGC
ATGGACGTGGCC
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