mRNA_M-pyrifera_M_contig124213.4933.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124213.4933.1
Unique NamemRNA_M-pyrifera_M_contig124213.4933.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5VI74_PRUPE (DUF4216 domain-containing protein (Fragment) n=2 Tax=Prunus TaxID=3754 RepID=M5VI74_PRUPE)

HSP 1 Score: 308 bits (788), Expect = 2.620e-105
Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 1 
Query:    1 LINLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            +INLQVQSELEEDNHGVSENLRWLAAGPNM+VPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:    1 MINLQVQSELEEDNHGVSENLRWLAAGPNMAVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 154
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BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5WLR8_PRUPE (DUF4216 domain-containing protein n=2 Tax=Prunus TaxID=3754 RepID=M5WLR8_PRUPE)

HSP 1 Score: 308 bits (788), Expect = 1.040e-104
Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 1 
Query:    1 LINLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            +INLQVQSE+EEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:    1 MINLQVQSEVEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 154
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BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5X8Z3_PRUPE (DUF4216 domain-containing protein (Fragment) n=2 Tax=Prunus persica TaxID=3760 RepID=M5X8Z3_PRUPE)

HSP 1 Score: 306 bits (784), Expect = 1.070e-104
Identity = 148/154 (96.10%), Postives = 153/154 (99.35%), Query Frame = 1 
Query:    1 LINLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            +INLQVQSELEEDNHGVSENLRWLAAGPNM+VPLYRSYLIKGIKFNIKAQDD+RTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLV+DELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:    1 MINLQVQSELEEDNHGVSENLRWLAAGPNMAVPLYRSYLIKGIKFNIKAQDDMRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVIDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 154
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BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5WVZ8_PRUPE (DUF4216 domain-containing protein (Fragment) n=6 Tax=Prunus persica TaxID=3760 RepID=M5WVZ8_PRUPE)

HSP 1 Score: 308 bits (788), Expect = 1.320e-104
Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 1 
Query:    1 LINLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            +INLQVQSE+EEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:    1 MINLQVQSEVEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 154
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BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5W7G5_PRUPE (DUF4216 domain-containing protein (Fragment) n=2 Tax=Prunus persica TaxID=3760 RepID=M5W7G5_PRUPE)

HSP 1 Score: 308 bits (788), Expect = 1.920e-104
Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 1 
Query:    1 LINLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            +INLQVQSE+EEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:    1 MINLQVQSEVEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 154
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BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5Y2R6_PRUPE (DUF4216 domain-containing protein n=3 Tax=Prunus persica TaxID=3760 RepID=M5Y2R6_PRUPE)

HSP 1 Score: 306 bits (784), Expect = 5.560e-104
Identity = 149/154 (96.75%), Postives = 153/154 (99.35%), Query Frame = 1 
Query:    1 LINLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            +INLQVQSE+EEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSN+GFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:    1 MINLQVQSEVEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNIGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 154
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BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5XA23_PRUPE (DUF4216 domain-containing protein (Fragment) n=2 Tax=Prunus TaxID=3754 RepID=M5XA23_PRUPE)

HSP 1 Score: 302 bits (773), Expect = 1.750e-102
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 1 
Query:    4 INLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            +  +VQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:   42 LRFKVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 194
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BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5VN60_PRUPE (DUF4216 domain-containing protein n=16 Tax=Prunus TaxID=3754 RepID=M5VN60_PRUPE)

HSP 1 Score: 301 bits (771), Expect = 3.400e-102
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 1 
Query:   16 VQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            VQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:   23 VQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5WQ08_PRUPE (DUF4216 domain-containing protein n=62 Tax=cellular organisms TaxID=131567 RepID=M5WQ08_PRUPE)

HSP 1 Score: 301 bits (770), Expect = 7.030e-102
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 1 
Query:    4 INLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            +  +VQSELEEDNHGVSENLRWLAAGPNM+VPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:   30 LRFKVQSELEEDNHGVSENLRWLAAGPNMAVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Match: M5WX35_PRUPE (DUF4216 domain-containing protein n=2 Tax=Prunus persica TaxID=3760 RepID=M5WX35_PRUPE)

HSP 1 Score: 305 bits (780), Expect = 9.230e-102
Identity = 149/154 (96.75%), Postives = 152/154 (98.70%), Query Frame = 1 
Query:    1 LINLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQDDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVDDPMH 462
            +INLQVQSELEEDNHGVSENLRWLAAGPNM+VPLYRSYLIKGIKFNIKAQDDVRTTQNS VYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRN+QFVLASQVKQI FVDDPMH
Sbjct:   95 MINLQVQSELEEDNHGVSENLRWLAAGPNMAVPLYRSYLIKGIKFNIKAQDDVRTTQNSRVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKFTIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNDQFVLASQVKQIFFVDDPMH 248
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124213.4933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M5VI74_PRUPE2.620e-10597.40DUF4216 domain-containing protein (Fragment) n=2 T... [more]
M5WLR8_PRUPE1.040e-10497.40DUF4216 domain-containing protein n=2 Tax=Prunus T... [more]
M5X8Z3_PRUPE1.070e-10496.10DUF4216 domain-containing protein (Fragment) n=2 T... [more]
M5WVZ8_PRUPE1.320e-10497.40DUF4216 domain-containing protein (Fragment) n=6 T... [more]
M5W7G5_PRUPE1.920e-10497.40DUF4216 domain-containing protein (Fragment) n=2 T... [more]
M5Y2R6_PRUPE5.560e-10496.75DUF4216 domain-containing protein n=3 Tax=Prunus p... [more]
M5XA23_PRUPE1.750e-10296.08DUF4216 domain-containing protein (Fragment) n=2 T... [more]
M5VN60_PRUPE3.400e-10298.66DUF4216 domain-containing protein n=16 Tax=Prunus ... [more]
M5WQ08_PRUPE7.030e-10295.42DUF4216 domain-containing protein n=62 Tax=cellula... [more]
M5WX35_PRUPE9.230e-10296.75DUF4216 domain-containing protein n=2 Tax=Prunus p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124213contigM-pyrifera_M_contig124213:59..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score312.4
Seed ortholog evalue1.2e-82
Seed eggNOG ortholog3760.EMJ14496
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4216)
EggNOG OGs2E08Q@1,2S7PW@2759,37X40@33090,3GM2T@35493,4JV91@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.6803122-CDS-M-pyrifera_M_contig124213:58..5201622815759.6803122-CDS-M-pyrifera_M_contig124213:58..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124213 59..520 +
1692277556.2372308-CDS-M-pyrifera_M_contig124213:58..5201692277556.2372308-CDS-M-pyrifera_M_contig124213:58..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124213 59..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124213.4933.1prot_M-pyrifera_M_contig124213.4933.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124213 59..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124213.4933.1

>prot_M-pyrifera_M_contig124213.4933.1 ID=prot_M-pyrifera_M_contig124213.4933.1|Name=mRNA_M-pyrifera_M_contig124213.4933.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
LINLQVQSELEEDNHGVSENLRWLAAGPNMSVPLYRSYLIKGIKFNIKAQ
DDVRTTQNSGVYLLAHTMQVASAKDKNPILSNMGFYGVIQEIWDLDYQKF
TIPVFRCDWIDSSGLVVDELGFTLVDLSKIGHRNEQFVLASQVKQICFVD
DPMH
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mRNA from alignment at M-pyrifera_M_contig124213:59..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124213.4933.1 ID=mRNA_M-pyrifera_M_contig124213.4933.1|Name=mRNA_M-pyrifera_M_contig124213.4933.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig124213:59..520+ (Macrocystis pyrifera P11B4 male)
TTGATTAATTTGCAGGTTCAAAGTGAACTTGAGGAAGACAATCATGGCGT
ATCAGAAAATTTAAGGTGGCTAGCAGCTGGTCCAAACATGTCAGTGCCAT
TATATAGGAGCTATCTTATTAAAGGTATTAAATTCAATATCAAGGCACAA
GATGATGTGCGGACAACTCAAAATAGTGGAGTTTATTTACTTGCACATAC
CATGCAAGTTGCTAGTGCCAAGGATAAAAACCCAATTCTCTCAAATATGG
GTTTCTATGGTGTCATTCAAGAAATTTGGGACCTTGACTACCAAAAGTTT
ACAATCCCAGTCTTTAGGTGTGATTGGATAGATAGTTCTGGTCTTGTAGT
CGACGAACTTGGATTTACCCTTGTAGATTTGAGTAAAATTGGACATAGGA
ATGAGCAATTTGTTTTGGCTTCTCAAGTCAAACAAATATGTTTTGTTGAC
GACCCGATGCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124213:59..520+

>mRNA_M-pyrifera_M_contig124213.4933.1 ID=mRNA_M-pyrifera_M_contig124213.4933.1|Name=mRNA_M-pyrifera_M_contig124213.4933.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig124213:59..520+ (Macrocystis pyrifera P11B4 male)
TTGATTAATTTGCAGGTTCAAAGTGAACTTGAGGAAGACAATCATGGCGT
ATCAGAAAATTTAAGGTGGCTAGCAGCTGGTCCAAACATGTCAGTGCCAT
TATATAGGAGCTATCTTATTAAAGGTATTAAATTCAATATCAAGGCACAA
GATGATGTGCGGACAACTCAAAATAGTGGAGTTTATTTACTTGCACATAC
CATGCAAGTTGCTAGTGCCAAGGATAAAAACCCAATTCTCTCAAATATGG
GTTTCTATGGTGTCATTCAAGAAATTTGGGACCTTGACTACCAAAAGTTT
ACAATCCCAGTCTTTAGGTGTGATTGGATAGATAGTTCTGGTCTTGTAGT
CGACGAACTTGGATTTACCCTTGTAGATTTGAGTAAAATTGGACATAGGA
ATGAGCAATTTGTTTTGGCTTCTCAAGTCAAACAAATATGTTTTGTTGAC
GACCCGATGCATTTGATTAATTTGCAGGTTCAAAGTGAACTTGAGGAAGA
CAATCATGGCGTATCAGAAAATTTAAGGTGGCTAGCAGCTGGTCCAAACA
TGTCAGTGCCATTATATAGGAGCTATCTTATTAAAGGTATTAAATTCAAT
ATCAAGGCACAAGATGATGTGCGGACAACTCAAAATAGTGGAGTTTATTT
ACTTGCACATACCATGCAAGTTGCTAGTGCCAAGGATAAAAACCCAATTC
TCTCAAATATGGGTTTCTATGGTGTCATTCAAGAAATTTGGGACCTTGAC
TACCAAAAGTTTACAATCCCAGTCTTTAGGTGTGATTGGATAGATAGTTC
TGGTCTTGTAGTCGACGAACTTGGATTTACCCTTGTAGATTTGAGTAAAA
TTGGACATAGGAATGAGCAATTTGTTTTGGCTTCTCAAGTCAAACAAATA
TGTTTTGTTGACGACCCGATGCAT
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