mRNA_M-pyrifera_M_contig124202.4928.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124202.4928.1
Unique NamemRNA_M-pyrifera_M_contig124202.4928.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: A0A8K1CHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHX8_PYTOL)

HSP 1 Score: 110 bits (275), Expect = 1.230e-25
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKEDARQAAARVCTGLARL 372
            ++ F+V  CYFPITFTPPPNDP G+T EDL++ LR  FAA D++A  VLP LLEKL+S   +AK D+ +TL+    AY+      Y   +  AL+H+ V GEK++  +A+ +  T  A L
Sbjct:  221 QQYFDVVSCYFPITFTPPPNDPYGITSEDLITSLRKAFAASDLLARHVLPFLLEKLSSTVTEAKLDSIQTLVFCCEAYSINVTLLYLHTIATALYHEVVKGEKKEVIEASLKAITRFASL 340
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: A0A5D6XS49_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS49_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.020e-24
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKEDARQAA 342
            +  F+V  CYFPITFTPPPNDP G+T E+L+  LR  FAA D++A   +P LLEKLAS   +AK DA +TL+    AY   AL  +   V +AL+H+ V GE+++  +AA
Sbjct:  227 QHYFDVVSCYFPITFTPPPNDPYGITSEELIGSLRRAFAASDLLAKHAVPFLLEKLASTVVEAKLDALQTLVFCCEAYAVNALLLHMVPVANALYHEVVKGERKEVIEAA 336
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: A0A3M6VKJ3_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKJ3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.010e-24
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKED----ARQAAARVCTGLARLHA 378
            ++ F++  CYFPI FTPPPNDP G+T E+L+  LR  FAA D++AP VLP LL+KLAS   +AK DA +TL+     Y+  AL     AV  AL+ + + GEK++    ARQA +R    +AR  A
Sbjct:  238 QQYFDIVSCYFPIIFTPPPNDPYGITSEELILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNALLLQMHAVATALYDEVLDGEKQEVIIEARQAISRFSGVVARAKA 363
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: K3WEQ0_GLOUD (MMS19 nucleotide excision repair protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEQ0_GLOUD)

HSP 1 Score: 105 bits (261), Expect = 9.530e-24
Identity = 52/112 (46.43%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKEDARQAAAR 348
            ++ F+V  CYFPITFTPPPNDP G+T E+L+  LR  FAA D++A  VLP LLEKL+S   +AK D+ +TL+    AY+      +  ++ +AL+H+ V GEK++  +A+ R
Sbjct:  225 QQYFDVVSCYFPITFTPPPNDPYGITSEELILSLRKAFAASDLLAKHVLPFLLEKLSSTVVEAKLDSLQTLVFCCEAYSINVALLHMLSIANALYHEVVKGEKKEVIEASLR 336
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: D0NXI8_PHYIT (MMS19 nucleotide excision repair protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0NXI8_PHYIT)

HSP 1 Score: 104 bits (260), Expect = 1.300e-23
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKED----ARQAAARVCTGLARLHA 378
            ++ F+V  CYFPI FTPPPNDP G+T E L+  LR  FAA D++AP VLP LL+KLAS   +AK DA +TL+     Y+  AL     AV  AL+ + + GEK++    ARQA +R    +AR  A
Sbjct:  266 QQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDAIQTLVFCGERYSVNALLLQMHAVATALYDEVLDGEKQEVIAEARQAISRFSGVVARAKA 391
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: A0A3R7JFL1_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JFL1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.320e-23
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKED----ARQAAARVCTGLARLHA 378
            ++ F+V  CYFPI FTPPPNDP G+T E L+  LR  FAA D++AP VLP LL+KLAS   +AK DA +TL+     Y+  AL     AV  AL+ + + GEK++    ARQA +R    +AR  A
Sbjct:  608 QQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNALLLQMHAVATALYDEVLDGEKQEVITEARQAISRFSGVVARAKA 733
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: A0A421GLT5_9STRA (MMS19 nucleotide excision repair protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GLT5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.320e-23
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKED----ARQAAARVCTGLARLHA 378
            ++ F+V  CYFPI FTPPPNDP G+T E L+  LR  FAA D++AP VLP LL+KLAS   +AK DA +TL+     Y+  AL     AV  AL+ + + GEK++    ARQA +R    +AR  A
Sbjct:  609 QQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNALLLQMHAVATALYDEVLDGEKQEVITEARQAISRFSGVVARAKA 734
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: H3GFF5_PHYRM (MMS19 nucleotide excision repair protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GFF5_PHYRM)

HSP 1 Score: 104 bits (259), Expect = 1.780e-23
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKED----ARQAAARVCTGLARLHA 378
            ++ F++  CYFPI FTPPPNDP G+T E L+  LR  FAA D++AP VLP LL+KLAS   +AK DA +TL+     Y+  AL     AV  AL+ + + GEK++    ARQA +R    +AR  A
Sbjct:  238 QQYFDIVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNALLLQMHAVATALYDEVLDGEKQEVIAEARQAISRFSGVVARAKA 363
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: A0A2P4Y010_9STRA (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y010_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.120e-22
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKED----ARQAAARVCTGLARLHA 378
            ++ F++  CYFPI FTPPPNDP G+T E L+  LR  FAA D++AP VLP LL+KLAS   +AK DA +TL+     Y+  AL     AV  AL+ + + GEK++    AR A +R    +AR  A
Sbjct:  647 QQYFDIVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNALLLQMHAVATALYDEVLDGEKQEVIAEARLAISRFSGVVARARA 772
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BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Match: A0A662XHF0_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHF0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.130e-22
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   13 EELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAPFVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHHDAVHGEKED----ARQAAARVCTGLARLHA 378
            ++ F+V  CYFPI FTPPPNDP G+T E L+  LR  FAA D++AP VLP LL+KLAS   +AK DA +TL+     Y+  AL     A+  AL+ + + GEK++    AR A +R    +AR  A
Sbjct:  238 QQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNALLLQMHALATALYDEVLDGEKQEVITEARLAVSRFAGIVARAKA 363
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124202.4928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1CHX8_PYTOL1.230e-2546.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XS49_9STRA2.020e-2449.09MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A3M6VKJ3_9STRA7.010e-2446.83MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
K3WEQ0_GLOUD9.530e-2446.43MMS19 nucleotide excision repair protein n=1 Tax=G... [more]
D0NXI8_PHYIT1.300e-2347.62MMS19 nucleotide excision repair protein n=10 Tax=... [more]
A0A3R7JFL1_9STRA1.320e-2347.62MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A421GLT5_9STRA1.320e-2347.62MMS19 nucleotide excision repair protein n=3 Tax=P... [more]
H3GFF5_PHYRM1.780e-2346.83MMS19 nucleotide excision repair protein n=22 Tax=... [more]
A0A2P4Y010_9STRA1.120e-2246.03MMS19 nucleotide excision repair protein (Fragment... [more]
A0A662XHF0_9STRA2.130e-2246.03MMS19 nucleotide excision repair protein n=2 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124202contigM-pyrifera_M_contig124202:143..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue2.1e-21
Seed eggNOG ortholog65071.PYU1_T003441
Preferred nameMMS19
KEGG koko:K15075
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000160,GO:0000228,GO:0000428,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006351,GO:0006355,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0007059,GO:0007154,GO:0007165,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010569,GO:0010604,GO:0010628,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022607,GO:0023052,GO:0030159,GO:0030331,GO:0030674,GO:0030880,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031618,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032947,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035258,GO:0035556,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045739,GO:0045893,GO:0045911,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051186,GO:0051252,GO:0051254,GO:0051427,GO:0051604,GO:0051716,GO:0055029,GO:0060090,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090575,GO:0097361,GO:0097428,GO:0097659,GO:0098687,GO:0106035,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1905168,GO:1990234,GO:2000112,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001141
EggNOG free text desc.MMS19 nucleotide excision repair protein. Source PGD
EggNOG OGs1MEHP@121069,KOG1967@1,KOG1967@2759
COG Functional cat.KL
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.483689-CDS-M-pyrifera_M_contig124202:142..5201622815759.483689-CDS-M-pyrifera_M_contig124202:142..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124202 143..520 +
1692277556.1526022-CDS-M-pyrifera_M_contig124202:142..5201692277556.1526022-CDS-M-pyrifera_M_contig124202:142..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124202 143..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124202.4928.1prot_M-pyrifera_M_contig124202.4928.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124202 143..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124202.4928.1

>prot_M-pyrifera_M_contig124202.4928.1 ID=prot_M-pyrifera_M_contig124202.4928.1|Name=mRNA_M-pyrifera_M_contig124202.4928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MSAAEELFEVTGCYFPITFTPPPNDPNGVTKEDLVSRLRAVFAAGDVMAP
FVLPLLLEKLASARADAKRDAAETLLHVARAYTPAALTKYWPAVVDALHH
DAVHGEKEDARQAAARVCTGLARLHA
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mRNA from alignment at M-pyrifera_M_contig124202:143..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124202.4928.1 ID=mRNA_M-pyrifera_M_contig124202.4928.1|Name=mRNA_M-pyrifera_M_contig124202.4928.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig124202:143..520+ (Macrocystis pyrifera P11B4 male)
ATGAGCGCGGCGGAGGAGCTGTTCGAGGTCACCGGCTGCTACTTCCCCAT
CACCTTCACGCCGCCGCCCAACGACCCTAACGGCGTCACCAAGGAGGACC
TGGTGAGCCGCCTGCGCGCTGTCTTCGCCGCCGGCGACGTCATGGCGCCC
TTCGTGCTGCCGCTGCTGCTGGAGAAGCTGGCGTCGGCGCGCGCGGACGC
GAAGCGGGACGCGGCGGAGACGCTGCTTCACGTCGCCCGCGCCTACACCC
CCGCCGCCCTCACCAAGTACTGGCCCGCCGTCGTCGACGCCCTGCACCAC
GACGCGGTGCACGGCGAGAAGGAAGACGCCCGCCAGGCGGCCGCGCGCGT
GTGCACGGGGCTGGCCCGCCTGCACGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124202:143..520+

>mRNA_M-pyrifera_M_contig124202.4928.1 ID=mRNA_M-pyrifera_M_contig124202.4928.1|Name=mRNA_M-pyrifera_M_contig124202.4928.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig124202:143..520+ (Macrocystis pyrifera P11B4 male)
ATGAGCGCGGCGGAGGAGCTGTTCGAGGTCACCGGCTGCTACTTCCCCAT
CACCTTCACGCCGCCGCCCAACGACCCTAACGGCGTCACCAAGGAGGACC
TGGTGAGCCGCCTGCGCGCTGTCTTCGCCGCCGGCGACGTCATGGCGCCC
TTCGTGCTGCCGCTGCTGCTGGAGAAGCTGGCGTCGGCGCGCGCGGACGC
GAAGCGGGACGCGGCGGAGACGCTGCTTCACGTCGCCCGCGCCTACACCC
CCGCCGCCCTCACCAAGTACTGGCCCGCCGTCGTCGACGCCCTGCACCAC
GACGCGGTGCACGGCGAGAAGGAAGACGCCCGCCAGGCGGCCGCGCGCGT
GTGCACGGGGCTGGCCCGCCTGCACGCGATGAGCGCGGCGGAGGAGCTGT
TCGAGGTCACCGGCTGCTACTTCCCCATCACCTTCACGCCGCCGCCCAAC
GACCCTAACGGCGTCACCAAGGAGGACCTGGTGAGCCGCCTGCGCGCTGT
CTTCGCCGCCGGCGACGTCATGGCGCCCTTCGTGCTGCCGCTGCTGCTGG
AGAAGCTGGCGTCGGCGCGCGCGGACGCGAAGCGGGACGCGGCGGAGACG
CTGCTTCACGTCGCCCGCGCCTACACCCCCGCCGCCCTCACCAAGTACTG
GCCCGCCGTCGTCGACGCCCTGCACCACGACGCGGTGCACGGCGAGAAGG
AAGACGCCCGCCAGGCGGCCGCGCGCGTGTGCACGGGGCTGGCCCGCCTG
CACGCG
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