mRNA_M-pyrifera_M_contig124063.4912.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124063.4912.1
Unique NamemRNA_M-pyrifera_M_contig124063.4912.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A6L7WR96_9BACT (Dienelactone hydrolase family protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L7WR96_9BACT)

HSP 1 Score: 191 bits (485), Expect = 1.730e-59
Identity = 89/117 (76.07%), Postives = 98/117 (83.76%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANLG 351
            TVGFCMGGQLSL+AACAN  VGACV++YGIHP V P+L +L  P LGFFAEKDGFVTPEVARKLEADL A GK VEI I++GADHAFFNDTR EVYH EYA + W RMLAFY  +LG
Sbjct:  109 TVGFCMGGQLSLFAACANAKVGACVDFYGIHPNVTPDLASLRAPVLGFFAEKDGFVTPEVARKLEADLRAAGKEVEITIFEGADHAFFNDTRAEVYHAEYAAECWTRMLAFYRRHLG 225          
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A6B1DDW4_9BACT (Dienelactone hydrolase family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6B1DDW4_9BACT)

HSP 1 Score: 185 bits (470), Expect = 2.890e-57
Identity = 85/116 (73.28%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANL 348
            TVGFCMGGQLSL+AACAN  VGACV++YGIHP V P+L  L  P LGFFAEKDGFVTPEVARKLEADL A GK V+I +++GADHAFFNDTR EVYH EYA + W R+LAFY  +L
Sbjct:  106 TVGFCMGGQLSLFAACANLKVGACVDFYGIHPNVTPDLAGLQAPVLGFFAEKDGFVTPEVARKLEADLKAAGKSVDITVFEGADHAFFNDTRAEVYHPEYAAECWSRVLAFYRTHL 221          
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A7X3QBM7_9BACT (Dienelactone hydrolase family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X3QBM7_9BACT)

HSP 1 Score: 181 bits (459), Expect = 1.190e-55
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANL 348
            TVGFCMGGQLSLYAACANP VGACV++YGIHP V P+L  L  P LGFFAEKDGFV P  AR+LE+DL AVGK VEI +++GADHAFFNDTR EVY+  YA + W RM+AFY A+L
Sbjct:  101 TVGFCMGGQLSLYAACANPRVGACVDFYGIHPNVQPDLATLQAPVLGFFAEKDGFVPPSAARQLESDLQAVGKSVEITVFEGADHAFFNDTRPEVYNAAYAAECWSRMVAFYNAHL 216          
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A6L8GJE8_9BACT (Dienelactone hydrolase family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8GJE8_9BACT)

HSP 1 Score: 177 bits (450), Expect = 2.250e-55
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANL 348
            TVG CMGGQLSLYAACANP VGACV++YGIHP V P+L  L  P LGFFAEKDGFV P  AR+LE+DL AVGK VEI +++GADHAFFNDTR EVY+  YA + W RM+AFY A+L
Sbjct:   21 TVGGCMGGQLSLYAACANPRVGACVDFYGIHPNVQPDLATLQAPVLGFFAEKDGFVPPSAARQLESDLQAVGKSVEITVFEGADHAFFNDTRPEVYNAAYAAECWSRMVAFYNAHL 136          
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A1E7PVR1_9GAMM (DLH domain-containing protein n=1 Tax=Marinobacter sp. X15-166B TaxID=1897620 RepID=A0A1E7PVR1_9GAMM)

HSP 1 Score: 175 bits (444), Expect = 2.960e-53
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANL 348
            TVGFCMGGQLSLY ACAN  VGACVNYYG+HP+V+P+L  L+ P LGFFAE D  V  E A KLEADL   GK VE+HIY GA+HAFFN+TR EVY++EYA+D+W+RM AF+ ANL
Sbjct:  110 TVGFCMGGQLSLYTACANDKVGACVNYYGVHPDVHPDLAALNAPVLGFFAENDRSVPVETAHKLEADLKTAGKDVEMHIYPGAEHAFFNNTRKEVYNEEYAQDSWKRMTAFFKANL 225          
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A2E4FPC5_9BACT (Carboxymethylenebutenolidase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E4FPC5_9BACT)

HSP 1 Score: 169 bits (428), Expect = 7.880e-51
Identity = 79/116 (68.10%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANL 348
            TVGFCMGGQLSLYAAC N  VGACV +YGIHP V+PNL  L  P LGFFAEKDGFV P  AR+LEADL A G+ VEI I++GADHAFFNDTR EVY + +A   W RML FY  ++
Sbjct:  110 TVGFCMGGQLSLYAACENSAVGACVVFYGIHPNVSPNLSTLQAPVLGFFAEKDGFVPPAAARQLEADLQAAGRSVEITIFEGADHAFFNDTRVEVYDEAHAATCWSRMLTFYREHV 225          
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A432X1H7_9GAMM (Dienelactone hydrolase n=1 Tax=Aliidiomarina taiwanensis TaxID=946228 RepID=A0A432X1H7_9GAMM)

HSP 1 Score: 167 bits (424), Expect = 3.280e-50
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANL 348
            TVGFCMGGQLSL+AAC+N  VGACVN+YGIHP+V P++ +L  P LGFFAE D  V P  A++LEADL A GK V IHIY  ADHAFFN+TR EVYH+ YAED W + L F+   L
Sbjct:  110 TVGFCMGGQLSLFAACSNEQVGACVNFYGIHPDVTPDIASLEAPVLGFFAENDSSVPPSAAKQLEADLKAAGKKVSIHIYPNADHAFFNNTRPEVYHQAYAEDAWDKTLTFFRQEL 225          
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A523DKI5_9BACT (Dienelactone hydrolase family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523DKI5_9BACT)

HSP 1 Score: 165 bits (417), Expect = 3.650e-49
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANL 348
            TVGFCMGGQLSLYAAC N +V ACV +YGIHP V PNL  L  P LGFFAEKD FV P  AR+LEADL A GK   I I+DGADHAFFNDTR EVY K +A   W RMLAFY  ++
Sbjct:  110 TVGFCMGGQLSLYAACENRSVSACVVFYGIHPNVTPNLSALEAPVLGFFAEKDEFVPPAAARQLEADLKAAGKTATITIFDGADHAFFNDTRAEVYDKVHAATCWSRMLAFYREHV 225          
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A2H5W3E0_9BACT (Carboxymethylenebutenolidase n=5 Tax=Bacteria TaxID=2 RepID=A0A2H5W3E0_9BACT)

HSP 1 Score: 164 bits (416), Expect = 5.030e-49
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANL 348
            T+GFCMGG LSLYAAC NP V ACV +YG HP V PNLE L  P LG +AE+D FVTPE  R+LEA L  +GK  EIHIY GADHAFFNDTR EVY++E AED W+R L F++  L
Sbjct:  109 TIGFCMGGALSLYAACENPQVSACVVFYGGHPNVKPNLEKLQAPVLGIYAERDQFVTPESVRQLEAQLKQLGKTAEIHIYPGADHAFFNDTRPEVYNREAAEDAWRRTLDFFSKYL 224          
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Match: A0A2E1W2H2_9BACT (DLH domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A2E1W2H2_9BACT)

HSP 1 Score: 164 bits (414), Expect = 1.040e-48
Identity = 77/116 (66.38%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 TVGFCMGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGFVTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTWQRMLAFYAANL 348
            TVGFCMGGQLSL AACANP VGACV++YGIHP V PNLE+L  P LGFFAEKD FV P  AR+LEADL   GK   I +++GAD AFFNDTRTEVY  + A   W RML FY  ++
Sbjct:  110 TVGFCMGGQLSLSAACANPAVGACVDFYGIHPSVTPNLESLQAPVLGFFAEKDDFVPPAAARQLEADLAVAGKTANITVFEGADXAFFNDTRTEVYDADLAATCWTRMLTFYREHV 225          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124063.4912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7WR96_9BACT1.730e-5976.07Dienelactone hydrolase family protein n=2 Tax=Acid... [more]
A0A6B1DDW4_9BACT2.890e-5773.28Dienelactone hydrolase family protein n=1 Tax=Acid... [more]
A0A7X3QBM7_9BACT1.190e-5571.55Dienelactone hydrolase family protein n=1 Tax=Acid... [more]
A0A6L8GJE8_9BACT2.250e-5570.69Dienelactone hydrolase family protein n=1 Tax=Acid... [more]
A0A1E7PVR1_9GAMM2.960e-5368.97DLH domain-containing protein n=1 Tax=Marinobacter... [more]
A0A2E4FPC5_9BACT7.880e-5168.10Carboxymethylenebutenolidase n=2 Tax=Acidobacteria... [more]
A0A432X1H7_9GAMM3.280e-5064.66Dienelactone hydrolase n=1 Tax=Aliidiomarina taiwa... [more]
A0A523DKI5_9BACT3.650e-4968.10Dienelactone hydrolase family protein n=1 Tax=Acid... [more]
A0A2H5W3E0_9BACT5.030e-4965.52Carboxymethylenebutenolidase n=5 Tax=Bacteria TaxI... [more]
A0A2E1W2H2_9BACT1.040e-4866.38DLH domain-containing protein n=3 Tax=root TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124063contigM-pyrifera_M_contig124063:2..355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score119.0
Seed ortholog evalue1.4e-24
Seed eggNOG ortholog661478.OP10G_0571
Preferred nameMA20_42490
KEGG rclassRC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686
KEGG koko:K01061
KEGG ReactionR03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222
KEGG Pathwayko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carboxymethylenebutenolidase activity
EggNOG OGsCOG0412@1,COG0412@2
EC3.1.1.45
COG Functional cat.Q
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size354
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.6791232-UTR-M-pyrifera_M_contig124063:1..161622815758.6791232-UTR-M-pyrifera_M_contig124063:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124063 2..16 +
1692277555.7599337-UTR-M-pyrifera_M_contig124063:1..161692277555.7599337-UTR-M-pyrifera_M_contig124063:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124063 2..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.6915727-CDS-M-pyrifera_M_contig124063:16..3551622815758.6915727-CDS-M-pyrifera_M_contig124063:16..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124063 17..355 +
1692277555.7714972-CDS-M-pyrifera_M_contig124063:16..3551692277555.7714972-CDS-M-pyrifera_M_contig124063:16..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124063 17..355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124063.4912.1prot_M-pyrifera_M_contig124063.4912.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124063 17..355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124063.4912.1

>prot_M-pyrifera_M_contig124063.4912.1 ID=prot_M-pyrifera_M_contig124063.4912.1|Name=mRNA_M-pyrifera_M_contig124063.4912.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MGGQLSLYAACANPNVGACVNYYGIHPEVNPNLENLHGPFLGFFAEKDGF
VTPEVARKLEADLNAVGKPVEIHIYDGADHAFFNDTRTEVYHKEYAEDTW
QRMLAFYAANLG*
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mRNA from alignment at M-pyrifera_M_contig124063:2..355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124063.4912.1 ID=mRNA_M-pyrifera_M_contig124063.4912.1|Name=mRNA_M-pyrifera_M_contig124063.4912.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig124063:2..355+ (Macrocystis pyrifera P11B4 male)
ACGGTTGGATTCTGCATGGGCGGCCAATTGTCGCTATACGCCGCATGCGC GAATCCGAATGTCGGGGCGTGCGTCAATTACTACGGGATTCATCCCGAGG TCAACCCCAACCTCGAAAACTTACACGGGCCGTTTCTCGGATTCTTCGCG GAGAAGGATGGATTTGTCACGCCGGAAGTGGCGCGCAAATTGGAAGCCGA CCTCAACGCCGTCGGTAAGCCGGTCGAAATCCACATCTACGACGGCGCCG ATCACGCGTTCTTTAACGACACGCGCACCGAGGTCTACCACAAGGAATAC GCTGAGGATACCTGGCAACGGATGCTCGCATTCTATGCCGCGAACTTGGG CTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124063:2..355+

>mRNA_M-pyrifera_M_contig124063.4912.1 ID=mRNA_M-pyrifera_M_contig124063.4912.1|Name=mRNA_M-pyrifera_M_contig124063.4912.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig124063:2..355+ (Macrocystis pyrifera P11B4 male)
ATGGGCGGCCAATTGTCGCTATACGCCGCATGCGCGAATCCGAATGTCGG
GGCGTGCGTCAATTACTACGGGATTCATCCCGAGGTCAACCCCAACCTCG
AAAACTTACACGGGCCGTTTCTCGGATTCTTCGCGGAGAAGGATGGATTT
GTCACGCCGGAAGTGGCGCGCAAATTGGAAGCCGACCTCAACGCCGTCGG
TAAGCCGGTCGAAATCCACATCTACGACGGCGCCGATCACGCGTTCTTTA
ACGACACGCGCACCGAGGTCTACCACAAGGAATACGCTGAGGATACCTGG
CAACGGATGCTCGCATTCTATGCCGCGAACTTGGGCTAGATGGGCGGCCA
ATTGTCGCTATACGCCGCATGCGCGAATCCGAATGTCGGGGCGTGCGTCA
ATTACTACGGGATTCATCCCGAGGTCAACCCCAACCTCGAAAACTTACAC
GGGCCGTTTCTCGGATTCTTCGCGGAGAAGGATGGATTTGTCACGCCGGA
AGTGGCGCGCAAATTGGAAGCCGACCTCAACGCCGTCGGTAAGCCGGTCG
AAATCCACATCTACGACGGCGCCGATCACGCGTTCTTTAACGACACGCGC
ACCGAGGTCTACCACAAGGAATACGCTGAGGATACCTGGCAACGGATGCT
CGCATTCTATGCCGCGAACTTGGGCTAG
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