mRNA_M-pyrifera_M_contig123989.4897.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123989.4897.1
Unique NamemRNA_M-pyrifera_M_contig123989.4897.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: A0A0Q3ELT4_BRADI (ER lumen protein-retaining receptor n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3ELT4_BRADI)

HSP 1 Score: 158 bits (399), Expect = 4.360e-47
Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYI 300
            PC VLAL++NE+FTF EV WAFSIYLEAVA+LPQ+V+L R  +IDNL  +YVFFLG YRALY++NWIYRYFTEPH+ HW+ WIAG VQT L +DF YYYI
Sbjct:   81 PCLVLALLINEKFTFREVMWAFSIYLEAVAILPQLVLLQRTRNIDNLAGHYVFFLGAYRALYILNWIYRYFTEPHFVHWISWIAGIVQTLLYADFFYYYI 180
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BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: A0A4D9BL02_SALSN (ER lumen protein-retaining receptor n=8 Tax=Salvia TaxID=21880 RepID=A0A4D9BL02_SALSN)

HSP 1 Score: 158 bits (400), Expect = 8.370e-47
Identity = 71/105 (67.62%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYIRRCGC 315
            PC  LALI+NERF+F EV WAFS+YLEAVA+LPQ+V+L R  +IDNLT  YVF LG YRA Y++NWIYRYFTEPHY HW++WI+G VQT L +DF YYY  R  C
Sbjct:  103 PCLFLALIVNERFSFKEVMWAFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRAFYILNWIYRYFTEPHYVHWIIWISGLVQTLLYADFFYYYFERSPC 207
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BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: I1ILR5_BRADI (ER lumen protein-retaining receptor n=22 Tax=Poaceae TaxID=4479 RepID=I1ILR5_BRADI)

HSP 1 Score: 158 bits (399), Expect = 8.380e-47
Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYI 300
            PC VLAL++NE+FTF EV WAFSIYLEAVA+LPQ+V+L R  +IDNL  +YVFFLG YRALY++NWIYRYFTEPH+ HW+ WIAG VQT L +DF YYYI
Sbjct:  103 PCLVLALLINEKFTFREVMWAFSIYLEAVAILPQLVLLQRTRNIDNLAGHYVFFLGAYRALYILNWIYRYFTEPHFVHWISWIAGIVQTLLYADFFYYYI 202
[Close]
BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: A0A3B6HYP0_WHEAT (ER lumen protein-retaining receptor n=28 Tax=Poaceae TaxID=4479 RepID=A0A3B6HYP0_WHEAT)

HSP 1 Score: 157 bits (398), Expect = 1.190e-46
Identity = 72/100 (72.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYI 300
            PC VLA ++NERFTF EV WAFSIYLEAVA+LPQ+V+L R  +IDNLT  YVFFLG YR LY++NWIYRYFTEPH+ HW+ WIAG VQT L +DF YYYI
Sbjct:  103 PCLVLAFLINERFTFREVMWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVHWISWIAGIVQTMLYADFFYYYI 202
[Close]
BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: J3N8A5_ORYBR (ER lumen protein-retaining receptor n=4 Tax=Oryzeae TaxID=147380 RepID=J3N8A5_ORYBR)

HSP 1 Score: 157 bits (396), Expect = 2.390e-46
Identity = 71/100 (71.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYI 300
            PC VLAL++NE+FTF EV WAFSIYLEAVA+LPQ+V+L R  +IDNLT  YVFFLG YR LY++NWIYRYFTEPH+ HW+ W+AG VQT L +DF YYYI
Sbjct:  103 PCLVLALLINEKFTFREVMWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVHWISWMAGIVQTLLYADFFYYYI 202
[Close]
BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: A0A5J9UQ28_9POAL (ER lumen protein-retaining receptor n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UQ28_9POAL)

HSP 1 Score: 156 bits (395), Expect = 3.380e-46
Identity = 71/100 (71.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYI 300
            PC  LAL++NE+FTF EV WAFSIYLEAVA+LPQ+V+L R  +IDNLT  YVFFLG YR LY++NWIYRYFTEPH+ HW+ WIAG VQT L +DF YYYI
Sbjct:  103 PCLALALLINEKFTFREVMWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVHWISWIAGIVQTLLYADFFYYYI 202
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BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: A0A061SJV3_9CHLO (ER lumen protein-retaining receptor n=2 Tax=Chlorodendraceae TaxID=35429 RepID=A0A061SJV3_9CHLO)

HSP 1 Score: 156 bits (395), Expect = 3.380e-46
Identity = 69/101 (68.32%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYIR 303
            PCAVLALI+N +F+F E+ W FSIYLEAVA+LPQ+V+L R  +IDN+T NYVFFLGTYR LY++NWIYRYFTE  Y  W+VWI+G +QTAL  DF YYYI+
Sbjct:  103 PCAVLALIINHQFSFMEILWTFSIYLEAVAILPQLVLLQRTSNIDNMTGNYVFFLGTYRGLYILNWIYRYFTETRYRQWIVWISGVIQTALYCDFFYYYIK 203
[Close]
BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: A0A2P6TZR4_CHLSO (ER lumen protein-retaining receptor n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZR4_CHLSO)

HSP 1 Score: 156 bits (394), Expect = 4.790e-46
Identity = 71/101 (70.30%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYIR 303
            PC VLAL+LN RFTF EV W FSIYLEAVA+LPQ+V++ R  +IDNLTANYV  LG YR LY++NWIYRYFTEPHY  WLVWI+G VQTAL +DF Y+Y +
Sbjct:  103 PCLVLALVLNHRFTFTEVLWTFSIYLEAVAILPQLVLMQRTQNIDNLTANYVALLGAYRGLYIVNWIYRYFTEPHYRQWLVWISGVVQTALYADFFYFYTK 203
[Close]
BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: A0A2S3I5V3_9POAL (ER lumen protein-retaining receptor n=7 Tax=Poaceae TaxID=4479 RepID=A0A2S3I5V3_9POAL)

HSP 1 Score: 155 bits (392), Expect = 9.630e-46
Identity = 69/101 (68.32%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYIR 303
            PC +LAL+++E+FTF EV W FSIYLEAVA+LPQ+V+L R  +IDNLT  YVFFLG YR+LY++NWIYRYFTEPHY HW+ WI+G VQT L +DF YYYI 
Sbjct:  103 PCLILALLIHEQFTFKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRSLYILNWIYRYFTEPHYVHWITWISGFVQTLLYADFFYYYIN 203
[Close]
BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Match: A0A315AD77_PRUYE (ER lumen protein-retaining receptor n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A315AD77_PRUYE)

HSP 1 Score: 153 bits (387), Expect = 1.400e-45
Identity = 68/101 (67.33%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTANYVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYIR 303
            PC +LAL++NERFTF EV W FS+YLEAVA+LPQ+V+L R  +IDNLT  YVF LG YRALY++NWIYRYFTE HY HW+ WIAG +QT L  DF YYY +
Sbjct:   57 PCLLLALVINERFTFKEVLWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALYILNWIYRYFTEEHYVHWITWIAGTIQTLLYGDFFYYYFQ 157
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123989.4897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0Q3ELT4_BRADI4.360e-4772.00ER lumen protein-retaining receptor n=1 Tax=Brachy... [more]
A0A4D9BL02_SALSN8.370e-4767.62ER lumen protein-retaining receptor n=8 Tax=Salvia... [more]
I1ILR5_BRADI8.380e-4772.00ER lumen protein-retaining receptor n=22 Tax=Poace... [more]
A0A3B6HYP0_WHEAT1.190e-4672.00ER lumen protein-retaining receptor n=28 Tax=Poace... [more]
J3N8A5_ORYBR2.390e-4671.00ER lumen protein-retaining receptor n=4 Tax=Oryzea... [more]
A0A5J9UQ28_9POAL3.380e-4671.00ER lumen protein-retaining receptor n=2 Tax=Eragro... [more]
A0A061SJV3_9CHLO3.380e-4668.32ER lumen protein-retaining receptor n=2 Tax=Chloro... [more]
A0A2P6TZR4_CHLSO4.790e-4670.30ER lumen protein-retaining receptor n=1 Tax=Chlore... [more]
A0A2S3I5V3_9POAL9.630e-4668.32ER lumen protein-retaining receptor n=7 Tax=Poacea... [more]
A0A315AD77_PRUYE1.400e-4567.33ER lumen protein-retaining receptor n=1 Tax=Prunus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123989contigM-pyrifera_M_contig123989:3..317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score157.9
Seed ortholog evalue2.6e-36
Seed eggNOG ortholog4513.MLOC_3045.1
KEGG koko:K10949
KEGG Pathwayko05110,map05110
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ER lumen protein retaining receptor
EggNOG OGs37NC0@33090,3G83R@35493,3IF0I@38820,3KTIX@4447,COG5196@1,KOG3106@2759
COG Functional cat.U
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.9973853-CDS-M-pyrifera_M_contig123989:2..3171622815757.9973853-CDS-M-pyrifera_M_contig123989:2..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123989 3..317 +
1692277555.4735231-CDS-M-pyrifera_M_contig123989:2..3171692277555.4735231-CDS-M-pyrifera_M_contig123989:2..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123989 3..317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123989.4897.1prot_M-pyrifera_M_contig123989.4897.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123989 3..317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123989.4897.1

>prot_M-pyrifera_M_contig123989.4897.1 ID=prot_M-pyrifera_M_contig123989.4897.1|Name=mRNA_M-pyrifera_M_contig123989.4897.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
PCAVLALILNERFTFFEVFWAFSIYLEAVALLPQIVVLVRYGDIDNLTAN
YVFFLGTYRALYLINWIYRYFTEPHYSHWLVWIAGAVQTALVSDFLYYYI
RRCGC
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mRNA from alignment at M-pyrifera_M_contig123989:3..317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123989.4897.1 ID=mRNA_M-pyrifera_M_contig123989.4897.1|Name=mRNA_M-pyrifera_M_contig123989.4897.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig123989:3..317+ (Macrocystis pyrifera P11B4 male)
CCGTGTGCTGTGCTGGCCCTCATTCTCAACGAGAGATTCACCTTCTTTGA
GGTCTTCTGGGCCTTTTCTATCTATCTCGAAGCAGTCGCTCTTCTACCGC
AGATTGTCGTCCTTGTTCGGTACGGTGACATTGACAACCTCACTGCTAAC
TATGTCTTCTTCCTTGGCACCTATCGCGCTCTCTACCTCATCAACTGGAT
CTACCGCTACTTCACCGAGCCTCATTACTCCCACTGGCTTGTATGGATTG
CTGGCGCCGTTCAAACCGCCCTCGTCTCCGACTTCCTGTACTACTACATC
AGAAGGTGCGGTTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123989:3..317+

>mRNA_M-pyrifera_M_contig123989.4897.1 ID=mRNA_M-pyrifera_M_contig123989.4897.1|Name=mRNA_M-pyrifera_M_contig123989.4897.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig123989:3..317+ (Macrocystis pyrifera P11B4 male)
CCGTGTGCTGTGCTGGCCCTCATTCTCAACGAGAGATTCACCTTCTTTGA
GGTCTTCTGGGCCTTTTCTATCTATCTCGAAGCAGTCGCTCTTCTACCGC
AGATTGTCGTCCTTGTTCGGTACGGTGACATTGACAACCTCACTGCTAAC
TATGTCTTCTTCCTTGGCACCTATCGCGCTCTCTACCTCATCAACTGGAT
CTACCGCTACTTCACCGAGCCTCATTACTCCCACTGGCTTGTATGGATTG
CTGGCGCCGTTCAAACCGCCCTCGTCTCCGACTTCCTGTACTACTACATC
AGAAGGTGCGGTTGTCCGTGTGCTGTGCTGGCCCTCATTCTCAACGAGAG
ATTCACCTTCTTTGAGGTCTTCTGGGCCTTTTCTATCTATCTCGAAGCAG
TCGCTCTTCTACCGCAGATTGTCGTCCTTGTTCGGTACGGTGACATTGAC
AACCTCACTGCTAACTATGTCTTCTTCCTTGGCACCTATCGCGCTCTCTA
CCTCATCAACTGGATCTACCGCTACTTCACCGAGCCTCATTACTCCCACT
GGCTTGTATGGATTGCTGGCGCCGTTCAAACCGCCCTCGTCTCCGACTTC
CTGTACTACTACATCAGAAGGTGCGGTTGT
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