mRNA_M-pyrifera_M_contig123984.4896.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123984.4896.1
Unique NamemRNA_M-pyrifera_M_contig123984.4896.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: A0A2D4BLF1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLF1_PYTIN)

HSP 1 Score: 91.3 bits (225), Expect = 5.360e-19
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:   22 GAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
            G F +A  +  + G GLA LSLD  +Q+ RAR    R   V G+  GL  G +    G+ +GVTG+V+AP +GA+E GAVG VKGT+ G++G+ VKP  G  DFAS  ++G+
Sbjct:  626 GTFDAASKISGTFGQGLANLSLDEHYQQIRARA---RRRHVRGIREGLIQGSKELSLGVYEGVTGLVLAPMRGAQESGAVGFVKGTITGIIGLPVKPVAGIFDFASRASQGV 734
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BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: A0A8K1CCI9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCI9_PYTOL)

HSP 1 Score: 89.7 bits (221), Expect = 1.900e-18
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:   22 GAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
            G F +A  +  + G GLA LSLD  +Q+ RAR    R   V G+  GL  G +    G+ +GVTG+V+ P +GARE GAVG VKGT  G++G+ VKP  G  DFAS  ++G+
Sbjct: 4036 GTFDAASKISGTFGQGLANLSLDDRYQQVRARA---RRRHVRGIKEGLIQGSKELSFGVYEGVTGLVLGPMRGARENGAVGFVKGTFTGIIGLPVKPVAGIFDFASRASQGV 4144
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BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: A0A662YB47_9STRA (PH domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YB47_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.550e-18
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:   22 GAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
            G F +A  +  + G G A LSLD  +Q+ RAR    R   V GL  GL  G R    G+ +GV G+V+ P +GA+EGGAVG V+GT+ G++G+ VKP  G  DFAS   +G+
Sbjct:  228 GTFDAASKISGTFGQGFANLSLDDHYQQIRARA---RRHHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQEGGAVGFVRGTITGIIGLPVKPVAGIFDFASRATQGV 336
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BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: A0A5D6XG13_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XG13_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.830e-18
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:   22 GAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
            G F +A  +  + G GLA +SLD  +Q+ RAR    R   V G+  GL  G +    G+ +GVTG+V+ P +GA+E GA+G VKGT+ G++G+ VKP  G  DFAS   +G+
Sbjct: 4127 GTFDAASKISGTFGQGLATMSLDDHYQQIRARA---RRHHVRGIREGLVQGSKELSLGVYEGVTGLVLGPMRGAQENGALGFVKGTITGIIGLPVKPVAGIFDFASRATQGV 4235
[Close]
BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: A0A662Y4Z9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4Z9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.830e-18
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:   22 GAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
            G F +A  +  + G G A LSLD  +Q+ RAR    R   V GL  GL  G R    G+ +GV G+V+ P +GA+EGGAVG V+GT+ G++G+ VKP  G  DFAS   +G+
Sbjct: 3949 GTFDAASKISGTFGQGFANLSLDDHYQQIRARA---RRRHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQEGGAVGFVRGTITGIIGLPVKPVAGIFDFASRATQGV 4057
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BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: A0A085MN18_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085MN18_9BILA)

HSP 1 Score: 87.0 bits (214), Expect = 1.660e-17
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:    4 LGHAGGGAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
             GHA GG   +   +  ++G G+AAL++D+++Q+ R   +   + R T L SG+A GG     G++DGVTGV V P +GARE GA+G  KG   GL+G+  +P  G +DFASS+ E +
Sbjct: 2991 FGHALGGTAGAVSRITGTLGKGIAALTMDADYQKRRQEMM---NKRPTDLTSGIARGGTGAIMGVVDGVTGVFVKPIEGAREEGAIGFAKGLGKGLIGMVTRPVSGVVDFASSSLEAV 3105
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BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: A0A8J5JDU7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JDU7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.670e-17
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:   22 GAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
            G F +A  +  + G G A LSLD  +Q+ RAR    R   V GL  GL  G R    G+ +GV G+V+ P +GA+E GAVG VKGT+ G++G+ VKP  G  DFAS   +G+
Sbjct: 2954 GTFDAASKISGTFGQGFANLSLDDHYQQNRARA---RRRHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAVGFVKGTITGIIGLPVKPVAGIFDFASRATQGV 3062
[Close]
BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: A0A329T1H9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T1H9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.670e-17
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:   22 GAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
            G F +A  +  + G G A LSLD  +Q+ RAR    R   V GL  GL  G R    G+ +GV G+V+ P +GA+E GAVG VKGT+ G++G+ VKP  G  DFAS   +G+
Sbjct: 4026 GTFDAASKISGTFGQGFANLSLDDHYQQNRARA---RRRHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAVGFVKGTITGIIGLPVKPVAGIFDFASRATQGV 4134
[Close]
BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: W2Q5C4_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2Q5C4_PHYPN)

HSP 1 Score: 87.0 bits (214), Expect = 1.670e-17
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:   22 GAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
            G F +A  +  + G G A LSLD  +Q+ RAR    R   V GL  GL  G R    G+ +GV G+V+ P +GA+E GAVG VKGT+ G++G+ VKP  G  DFAS   +G+
Sbjct: 4039 GTFDAASKISGTFGQGFANLSLDDHYQQNRARA---RRRHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAVGFVKGTITGIIGLPVKPVAGIFDFASRATQGV 4147
[Close]
BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Match: V9EYS4_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=V9EYS4_PHYPR)

HSP 1 Score: 87.0 bits (214), Expect = 1.670e-17
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:   22 GAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTGLLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGVAVKPTVGALDFASSTAEGL 357
            G F +A  +  + G G A LSLD  +Q+ RAR    R   V GL  GL  G R    G+ +GV G+V+ P +GA+E GAVG VKGT+ G++G+ VKP  G  DFAS   +G+
Sbjct: 4039 GTFDAASKISGTFGQGFANLSLDDHYQQNRARA---RRRHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAVGFVKGTITGIIGLPVKPVAGIFDFASRATQGV 4147
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123984.4896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4BLF1_PYTIN5.360e-1945.54Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CCI9_PYTOL1.900e-1845.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662YB47_9STRA4.550e-1844.64PH domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A5D6XG13_9STRA4.830e-1842.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662Y4Z9_9STRA4.830e-1844.64Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A085MN18_9BILA1.660e-1742.37Uncharacterized protein n=2 Tax=Trichuris suis Tax... [more]
A0A8J5JDU7_9STRA1.670e-1744.64Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A329T1H9_9STRA1.670e-1744.64Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
W2Q5C4_PHYPN1.670e-1744.64Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9EYS4_PHYPR1.670e-1744.64Uncharacterized protein n=6 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123984contigM-pyrifera_M_contig123984:4..360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog42099.EPrPV00000013606
KEGG koko:K18441,ko:K19525,ko:K19527
KEGG Pathwayko04072,ko04144,map04072,map04144
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Vacuolar protein sorting-associated protein. Source PGD
EggNOG OGs1MD67@121069,COG5043@1,COG5307@1,KOG0930@2759,KOG1796@1,KOG1796@2759,KOG1809@2759
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.9533765-CDS-M-pyrifera_M_contig123984:3..3601622815757.9533765-CDS-M-pyrifera_M_contig123984:3..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123984 4..360 +
1692277555.4603019-CDS-M-pyrifera_M_contig123984:3..3601692277555.4603019-CDS-M-pyrifera_M_contig123984:3..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123984 4..360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123984.4896.1prot_M-pyrifera_M_contig123984.4896.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123984 4..360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123984.4896.1

>prot_M-pyrifera_M_contig123984.4896.1 ID=prot_M-pyrifera_M_contig123984.4896.1|Name=mRNA_M-pyrifera_M_contig123984.4896.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
FLGHAGGGAFRSARGVVRSVGTGLAALSLDSEFQRARARQLYGRSGRVTG
LLSGLATGGRHFGRGLLDGVTGVVVAPYQGAREGGAVGLVKGTVIGLLGV
AVKPTVGALDFASSTAEGL
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mRNA from alignment at M-pyrifera_M_contig123984:4..360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123984.4896.1 ID=mRNA_M-pyrifera_M_contig123984.4896.1|Name=mRNA_M-pyrifera_M_contig123984.4896.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig123984:4..360+ (Macrocystis pyrifera P11B4 male)
TTCCTCGGCCACGCCGGCGGCGGCGCGTTTCGATCGGCCCGCGGGGTCGT
CCGCTCGGTGGGCACCGGCCTGGCGGCGCTCAGCCTGGACTCGGAGTTCC
AGCGCGCGCGGGCGCGGCAGCTGTACGGCAGGTCCGGCAGGGTGACTGGC
CTGCTGTCCGGGCTGGCGACGGGCGGCCGGCACTTTGGCCGCGGCCTGCT
GGACGGGGTGACGGGGGTGGTGGTGGCGCCGTACCAGGGCGCGCGAGAGG
GCGGCGCCGTCGGGCTGGTGAAGGGCACGGTCATCGGGCTGCTGGGCGTG
GCGGTGAAGCCCACCGTCGGCGCCCTCGACTTCGCGTCGTCCACGGCGGA
GGGCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123984:4..360+

>mRNA_M-pyrifera_M_contig123984.4896.1 ID=mRNA_M-pyrifera_M_contig123984.4896.1|Name=mRNA_M-pyrifera_M_contig123984.4896.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig123984:4..360+ (Macrocystis pyrifera P11B4 male)
TTCCTCGGCCACGCCGGCGGCGGCGCGTTTCGATCGGCCCGCGGGGTCGT
CCGCTCGGTGGGCACCGGCCTGGCGGCGCTCAGCCTGGACTCGGAGTTCC
AGCGCGCGCGGGCGCGGCAGCTGTACGGCAGGTCCGGCAGGGTGACTGGC
CTGCTGTCCGGGCTGGCGACGGGCGGCCGGCACTTTGGCCGCGGCCTGCT
GGACGGGGTGACGGGGGTGGTGGTGGCGCCGTACCAGGGCGCGCGAGAGG
GCGGCGCCGTCGGGCTGGTGAAGGGCACGGTCATCGGGCTGCTGGGCGTG
GCGGTGAAGCCCACCGTCGGCGCCCTCGACTTCGCGTCGTCCACGGCGGA
GGGCTTGTTCCTCGGCCACGCCGGCGGCGGCGCGTTTCGATCGGCCCGCG
GGGTCGTCCGCTCGGTGGGCACCGGCCTGGCGGCGCTCAGCCTGGACTCG
GAGTTCCAGCGCGCGCGGGCGCGGCAGCTGTACGGCAGGTCCGGCAGGGT
GACTGGCCTGCTGTCCGGGCTGGCGACGGGCGGCCGGCACTTTGGCCGCG
GCCTGCTGGACGGGGTGACGGGGGTGGTGGTGGCGCCGTACCAGGGCGCG
CGAGAGGGCGGCGCCGTCGGGCTGGTGAAGGGCACGGTCATCGGGCTGCT
GGGCGTGGCGGTGAAGCCCACCGTCGGCGCCCTCGACTTCGCGTCGTCCA
CGGCGGAGGGCTTG
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