mRNA_M-pyrifera_M_contig123981.4895.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123981.4895.1
Unique NamemRNA_M-pyrifera_M_contig123981.4895.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123981.4895.1 vs. uniprot
Match: A0A7S4HZD8_9EUKA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HZD8_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 7.040e-11
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    7 AMLNGLMPMEVLAVLQSGNILLSIFSRVPQIMLNHRERSTGQLSAFMLLLNFGGSVGSFIS 189
            A L G++PM V+A LQS N+L +I SR+PQI+ NH+  STGQLS  M+ LNFGG++   ++
Sbjct:  116 AALTGMVPMNVIAFLQSINVLFTIASRLPQIIENHKNSSTGQLSGLMIFLNFGGALARILT 176
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BLAST of mRNA_M-pyrifera_M_contig123981.4895.1 vs. uniprot
Match: A0A5B1R240_9AGAM (Mannose-P-dolichol utilization defect 1 protein homolog n=2 Tax=Dentipellis TaxID=154746 RepID=A0A5B1R240_9AGAM)

HSP 1 Score: 56.6 bits (135), Expect = 3.520e-7
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    4 IAMLNG-----LMPMEVLAVLQSGNILLSIFSRVPQIMLNHRERSTGQLSAFMLLLNFGG 168
            +AM+ G     ++P  +LA+LQ   + LS+FS++PQIM NHR RSTGQLSAF +L   GG
Sbjct:  150 VAMIAGAFTLAVVPHNILALLQLSTLPLSLFSKLPQIMQNHRARSTGQLSAFAVLAQIGG 209
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BLAST of mRNA_M-pyrifera_M_contig123981.4895.1 vs. uniprot
Match: A0A7G2CLB2_9TRYP (PQ loop repeat, putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=A0A7G2CLB2_9TRYP)

HSP 1 Score: 52.0 bits (123), Expect = 3.180e-6
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 FIAMLNGLMPMEVLAVLQSGNILLSIFSRVPQIMLNHRERSTGQLSAFMLLLNFGGSV 174
            F A   G +P  V   L S  ILL+I SRVPQI++N+R +STG LS     L FGG V
Sbjct:   15 FAAFCTGALPTSVHKALLSSQILLNISSRVPQILMNYRNKSTGALSFLTFFLAFGGGV 72
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BLAST of mRNA_M-pyrifera_M_contig123981.4895.1 vs. uniprot
Match: A0A0D7A233_9AGAR (Mannose-P-dolichol utilization defect 1 protein (Fragment) n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7A233_9AGAR)

HSP 1 Score: 53.5 bits (127), Expect = 3.570e-6
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   22 LMPMEVLAVLQSGNILLSIFSRVPQIMLNHRERSTGQLSAFMLL 153
            +MP  +L++LQ G + LS+FS++PQI  NHR+RSTGQLSAF ++
Sbjct:  159 IMPAHLLSLLQLGTVPLSLFSKIPQIAQNHRDRSTGQLSAFAVV 202
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BLAST of mRNA_M-pyrifera_M_contig123981.4895.1 vs. uniprot
Match: A0A8E2ASE5_9APHY (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2ASE5_9APHY)

HSP 1 Score: 51.6 bits (122), Expect = 2.080e-5
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   25 MPMEVLAVLQSGNILLSIFSRVPQIMLNHRERSTGQLSAFMLLLNFGG 168
            +P   LA LQ   + LS+FS++PQI+ NHR +STGQLSAF ++   GG
Sbjct:  160 LPRSALAPLQLATLPLSLFSKLPQILQNHRAKSTGQLSAFAVIAQIGG 207
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BLAST of mRNA_M-pyrifera_M_contig123981.4895.1 vs. uniprot
Match: D3AY63_POLPP (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AY63_POLPP)

HSP 1 Score: 49.7 bits (117), Expect = 8.300e-5
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   34 EVLAVLQSGNILLSIFSRVPQIMLNHRERSTGQLSAFMLLLNFGGSV 174
            E+L +L S NI ++IFS++PQ+ +N RE+S GQLS    LLNF GS+
Sbjct:  136 ELLLILTSANIGVAIFSKIPQLFMNFREKSVGQLSFVTTLLNFIGSL 182
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123981.4895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S4HZD8_9EUKA7.040e-1152.46Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A5B1R240_9AGAM3.520e-751.67Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A7G2CLB2_9TRYP3.180e-650.00PQ loop repeat, putative n=1 Tax=Angomonas deanei ... [more]
A0A0D7A233_9AGAR3.570e-656.82Mannose-P-dolichol utilization defect 1 protein (F... [more]
A0A8E2ASE5_9APHY2.080e-552.08Mannose-P-dolichol utilization defect 1 protein ho... [more]
D3AY63_POLPP8.300e-553.19Mannose-P-dolichol utilization defect 1 protein ho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123981contigM-pyrifera_M_contig123981:83..394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.897873-UTR-M-pyrifera_M_contig123981:82..911622815757.897873-UTR-M-pyrifera_M_contig123981:82..91Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123981 83..91 +
1692277555.4396615-UTR-M-pyrifera_M_contig123981:82..911692277555.4396615-UTR-M-pyrifera_M_contig123981:82..91Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123981 83..91 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.91187-CDS-M-pyrifera_M_contig123981:91..3941622815757.91187-CDS-M-pyrifera_M_contig123981:91..394Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123981 92..394 +
1692277555.4496543-CDS-M-pyrifera_M_contig123981:91..3941692277555.4496543-CDS-M-pyrifera_M_contig123981:91..394Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123981 92..394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123981.4895.1prot_M-pyrifera_M_contig123981.4895.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123981 92..394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123981.4895.1

>prot_M-pyrifera_M_contig123981.4895.1 ID=prot_M-pyrifera_M_contig123981.4895.1|Name=mRNA_M-pyrifera_M_contig123981.4895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MLNGLMPMEVLAVLQSGNILLSIFSRVPQIMLNHRERSTGQLSAFMLLLN
FGGSVGSFISLSLPLPLLYLNSLLSLSLSHTHTLSLSLPPSPCPLPIREP
F
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mRNA from alignment at M-pyrifera_M_contig123981:83..394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123981.4895.1 ID=mRNA_M-pyrifera_M_contig123981.4895.1|Name=mRNA_M-pyrifera_M_contig123981.4895.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig123981:83..394+ (Macrocystis pyrifera P11B4 male)
TTCATTGCGATGCTGAATGGCCTGATGCCCATGGAGGTGCTGGCGGTGCT
GCAGTCTGGCAACATTCTCCTTTCGATCTTCTCGCGCGTGCCGCAGATTA
TGCTCAACCACAGGGAGCGTAGCACCGGACAGCTGAGCGCCTTCATGCTC
CTCCTCAACTTCGGAGGCTCAGTTGGTTCGTTCATCTCTCTCTCTCTCCC
CCTTCCCCTGCTTTATCTCAACTCCCTTCTCTCTCTCTCTCTCTCACACA
CACACACACTCTCTCTCTCTCTTCCCCCCTCCCCGTGCCCACTTCCCATC
CGTGAGCCTTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123981:83..394+

>mRNA_M-pyrifera_M_contig123981.4895.1 ID=mRNA_M-pyrifera_M_contig123981.4895.1|Name=mRNA_M-pyrifera_M_contig123981.4895.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig123981:83..394+ (Macrocystis pyrifera P11B4 male)
ATGCTGAATGGCCTGATGCCCATGGAGGTGCTGGCGGTGCTGCAGTCTGG
CAACATTCTCCTTTCGATCTTCTCGCGCGTGCCGCAGATTATGCTCAACC
ACAGGGAGCGTAGCACCGGACAGCTGAGCGCCTTCATGCTCCTCCTCAAC
TTCGGAGGCTCAGTTGGTTCGTTCATCTCTCTCTCTCTCCCCCTTCCCCT
GCTTTATCTCAACTCCCTTCTCTCTCTCTCTCTCTCACACACACACACAC
TCTCTCTCTCTCTTCCCCCCTCCCCGTGCCCACTTCCCATCCGTGAGCCT
TTTATGCTGAATGGCCTGATGCCCATGGAGGTGCTGGCGGTGCTGCAGTC
TGGCAACATTCTCCTTTCGATCTTCTCGCGCGTGCCGCAGATTATGCTCA
ACCACAGGGAGCGTAGCACCGGACAGCTGAGCGCCTTCATGCTCCTCCTC
AACTTCGGAGGCTCAGTTGGTTCGTTCATCTCTCTCTCTCTCCCCCTTCC
CCTGCTTTATCTCAACTCCCTTCTCTCTCTCTCTCTCTCACACACACACA
CACTCTCTCTCTCTCTTCCCCCCTCCCCGTGCCCACTTCCCATCCGTGAG
CCTTTT
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