mRNA_M-pyrifera_M_contig123970.4892.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123970.4892.1
Unique NamemRNA_M-pyrifera_M_contig123970.4892.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A7M7RH90_STRPU (40S ribosomal protein S18 n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RH90_STRPU)

HSP 1 Score: 187 bits (476), Expect = 6.430e-59
Identity = 88/128 (68.75%), Postives = 113/128 (88.28%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
             +++ALTAIKGVGRR+A   CR ADI+ +KRAGELTDDE++KL+TILQ+P Q++IP WFLNRQ D++DGK  Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   26 KIMYALTAIKGVGRRYANICCRKADIDVSKRAGELTDDEVEKLMTILQNPRQYKIPDWFLNRQMDVKDGKYGQMMANNLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 153
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: UPI0014256AE1 (40S ribosomal protein S18 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256AE1)

HSP 1 Score: 187 bits (475), Expect = 8.840e-59
Identity = 86/128 (67.19%), Postives = 114/128 (89.06%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
             ++FA+TAIKG+GRR+A   C+ AD++ +KRAGELT+DE+ KLVTI+Q+P Q++IP WFLNRQRDI+DGK +Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 KIMFAMTAIKGIGRRYANLCCKKADVDLSKRAGELTEDEVDKLVTIMQNPRQYKIPDWFLNRQRDIKDGKFSQVLANALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: E3PQX3_MICSQ (40S ribosomal protein S18 n=3 Tax=Ascidiacea TaxID=7713 RepID=E3PQX3_MICSQ)

HSP 1 Score: 186 bits (473), Expect = 1.780e-58
Identity = 85/128 (66.41%), Postives = 113/128 (88.28%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
             +++A+TA+KGVGRRF+  +C+ AD++  KRAGELTDDEI ++VTI+Q+P Q++IP WFLNRQ+D++DGK +Q+ SN LDN LRED +RM+KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 KIMYAMTAVKGVGRRFSNLICKKADVDLTKRAGELTDDEIDRVVTIMQNPRQYKIPDWFLNRQKDVKDGKFSQVLSNQLDNKLREDTERMKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: UPI000180C23B (40S ribosomal protein S18 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI000180C23B)

HSP 1 Score: 186 bits (472), Expect = 2.530e-58
Identity = 86/128 (67.19%), Postives = 113/128 (88.28%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
            ++ FALTAIKG+GRRF+  +C+ AD++  KRAGEL+DDEI ++VTI+Q+P Q++IP WFLNRQ+D+RDGK  Q+ SN LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 HIAFALTAIKGIGRRFSTLVCKKADVDLTKRAGELSDDEIDRIVTIMQNPRQYKIPDWFLNRQKDVRDGKFGQILSNQLDNKLREDIERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A5M9MRF8_9EURO (Ribosomal 40S subunit protein S18B n=8 Tax=Aspergillus TaxID=5052 RepID=A0A5M9MRF8_9EURO)

HSP 1 Score: 186 bits (472), Expect = 2.790e-58
Identity = 86/128 (67.19%), Postives = 116/128 (90.62%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
             +++ALT IKGVGRR++  +C+ AD++ +KRAGELT +E++++VTILQ+PTQ++IPTWFLNRQRDI DGK++Q+ SN LD+ LRED++R++KIRSHRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   27 KIMYALTQIKGVGRRYSNLVCKKADVDLSKRAGELTTEELERVVTILQNPTQYKIPTWFLNRQRDITDGKDSQVLSNGLDSKLREDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 154
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A3F3RVL6_ASPNG (Uncharacterized protein n=8 Tax=Aspergillus TaxID=5052 RepID=A0A3F3RVL6_ASPNG)

HSP 1 Score: 185 bits (470), Expect = 5.620e-58
Identity = 85/128 (66.41%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
             +++ALT IKGVGRR++  +C+ AD++ +KRAGELT +E++++VTILQ PTQ++IPTWFLNRQRDI DGK++Q+ SN LD+ +RED++R++KIRSHRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   27 KIMYALTQIKGVGRRYSNLVCKKADVDLSKRAGELTTEELERIVTILQSPTQYKIPTWFLNRQRDITDGKDSQVVSNSLDSKIREDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 154
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A3N4L0Z4_9PEZI (Ribosomal protein S13 n=2 Tax=Morchella TaxID=5193 RepID=A0A3N4L0Z4_9PEZI)

HSP 1 Score: 185 bits (470), Expect = 5.620e-58
Identity = 85/128 (66.41%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
             V++ALT IKGVGRR++  +C+ AD++  KRAGELT +E++++VTI+Q+PTQ++IPTWFLNRQRDI DGK+TQ+ +N LDN +RED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   27 KVMYALTKIKGVGRRYSNLVCKKADVDLNKRAGELTTEELERIVTIIQNPTQYKIPTWFLNRQRDIVDGKDTQILANALDNKMREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 154
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A3P8YST4_ESOLU (40S ribosomal protein S18 n=3 Tax=Clupeocephala TaxID=186625 RepID=A0A3P8YST4_ESOLU)

HSP 1 Score: 184 bits (466), Expect = 1.940e-57
Identity = 85/128 (66.41%), Postives = 114/128 (89.06%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
             + FA+TAIKGVGRR+A  + R ADI+ +KRAGELTDDE++++VTI+Q+P Q++IP WFLNRQ+D++DGK +Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   23 KIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTDDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 150
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: A0A6P6RFD6_CARAU (40S ribosomal protein S18 n=31 Tax=Gnathostomata TaxID=7776 RepID=A0A6P6RFD6_CARAU)

HSP 1 Score: 184 bits (466), Expect = 2.070e-57
Identity = 86/128 (67.19%), Postives = 113/128 (88.28%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
             + FA+TAIKGVGRR+A  + R ADI+  KRAGELTDDE++++VTI+Q+P Q++IP WFLNRQ+DI+DGK +Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 KIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTDDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
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BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Match: RS18_BRABE (40S ribosomal protein S18 n=4 Tax=Bilateria TaxID=33213 RepID=RS18_BRABE)

HSP 1 Score: 184 bits (466), Expect = 2.070e-57
Identity = 82/128 (64.06%), Postives = 116/128 (90.62%), Query Frame = 1 
Query:    1 NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHPTQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIRHAYGLKVRGQHTKTTGRRGRTVGVAKKK 384
             ++FALT+IKGVGRR++  +C+ ADI+ +KRAGEL+D+E+++L+TI+Q+P Q++IP WFLNRQ+D++DGK +Q+ +N LDN LRED++R++KIR+HRG+RH +GL+VRGQHTKTTGRRGRTVGV+KKK
Sbjct:   25 KIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123970.4892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M7RH90_STRPU6.430e-5968.7540S ribosomal protein S18 n=2 Tax=Echinacea TaxID=... [more]
UPI0014256AE18.840e-5967.1940S ribosomal protein S18 n=1 Tax=Anneissia japoni... [more]
E3PQX3_MICSQ1.780e-5866.4140S ribosomal protein S18 n=3 Tax=Ascidiacea TaxID... [more]
UPI000180C23B2.530e-5867.1940S ribosomal protein S18 n=1 Tax=Ciona intestinal... [more]
A0A5M9MRF8_9EURO2.790e-5867.19Ribosomal 40S subunit protein S18B n=8 Tax=Aspergi... [more]
A0A3F3RVL6_ASPNG5.620e-5866.41Uncharacterized protein n=8 Tax=Aspergillus TaxID=... [more]
A0A3N4L0Z4_9PEZI5.620e-5866.41Ribosomal protein S13 n=2 Tax=Morchella TaxID=5193... [more]
A0A3P8YST4_ESOLU1.940e-5766.4140S ribosomal protein S18 n=3 Tax=Clupeocephala Ta... [more]
A0A6P6RFD6_CARAU2.070e-5767.1940S ribosomal protein S18 n=31 Tax=Gnathostomata T... [more]
RS18_BRABE2.070e-5764.0640S ribosomal protein S18 n=4 Tax=Bilateria TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123970contigM-pyrifera_M_contig123970:135..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score188.0
Seed ortholog evalue2.8e-45
Seed eggNOG ortholog7668.SPU_006459-tr
Preferred nameRpS18
KEGG koko:K02964
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Belongs to the universal ribosomal protein uS13 family
EggNOG OGs39ZZ4@33154,3BBA9@33208,3CYJW@33213,COG0099@1,KOG3311@2759
COG Functional cat.J
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.739593-CDS-M-pyrifera_M_contig123970:134..5211622815757.739593-CDS-M-pyrifera_M_contig123970:134..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123970 135..521 -
1692277555.374128-CDS-M-pyrifera_M_contig123970:134..5211692277555.374128-CDS-M-pyrifera_M_contig123970:134..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123970 135..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123970.4892.1prot_M-pyrifera_M_contig123970.4892.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123970 135..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123970.4892.1

>prot_M-pyrifera_M_contig123970.4892.1 ID=prot_M-pyrifera_M_contig123970.4892.1|Name=mRNA_M-pyrifera_M_contig123970.4892.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
NVVFALTAIKGVGRRFAGELCRLADINKAKRAGELTDDEIQKLVTILQHP
TQFEIPTWFLNRQRDIRDGKNTQLYSNYLDNSLREDMQRMRKIRSHRGIR
HAYGLKVRGQHTKTTGRRGRTVGVAKKK*
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mRNA from alignment at M-pyrifera_M_contig123970:135..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123970.4892.1 ID=mRNA_M-pyrifera_M_contig123970.4892.1|Name=mRNA_M-pyrifera_M_contig123970.4892.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig123970:135..521- (Macrocystis pyrifera P11B4 male)
AACGTTGTGTTCGCTCTCACTGCCATCAAGGGAGTGGGTCGCCGCTTCGC
TGGCGAGCTCTGCCGCCTGGCTGATATCAACAAGGCCAAGCGCGCCGGTG
AGCTCACCGACGACGAGATCCAGAAGCTTGTGACTATCCTCCAGCACCCC
ACCCAGTTCGAGATCCCCACGTGGTTCCTGAACAGGCAGAGGGACATCAG
GGACGGCAAGAACACTCAGCTGTACTCTAACTACCTCGACAACAGCCTCC
GTGAGGACATGCAGCGCATGCGCAAGATCAGGAGCCACCGTGGTATCCGC
CACGCCTACGGCCTCAAGGTGCGCGGCCAGCACACCAAGACCACCGGCAG
GCGCGGACGCACCGTCGGTGTCGCCAAGAAGAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123970:135..521-

>mRNA_M-pyrifera_M_contig123970.4892.1 ID=mRNA_M-pyrifera_M_contig123970.4892.1|Name=mRNA_M-pyrifera_M_contig123970.4892.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig123970:135..521- (Macrocystis pyrifera P11B4 male)
AACGTTGTGTTCGCTCTCACTGCCATCAAGGGAGTGGGTCGCCGCTTCGC
TGGCGAGCTCTGCCGCCTGGCTGATATCAACAAGGCCAAGCGCGCCGGTG
AGCTCACCGACGACGAGATCCAGAAGCTTGTGACTATCCTCCAGCACCCC
ACCCAGTTCGAGATCCCCACGTGGTTCCTGAACAGGCAGAGGGACATCAG
GGACGGCAAGAACACTCAGCTGTACTCTAACTACCTCGACAACAGCCTCC
GTGAGGACATGCAGCGCATGCGCAAGATCAGGAGCCACCGTGGTATCCGC
CACGCCTACGGCCTCAAGGTGCGCGGCCAGCACACCAAGACCACCGGCAG
GCGCGGACGCACCGTCGGTGTCGCCAAGAAGAAGTAAAACGTTGTGTTCG
CTCTCACTGCCATCAAGGGAGTGGGTCGCCGCTTCGCTGGCGAGCTCTGC
CGCCTGGCTGATATCAACAAGGCCAAGCGCGCCGGTGAGCTCACCGACGA
CGAGATCCAGAAGCTTGTGACTATCCTCCAGCACCCCACCCAGTTCGAGA
TCCCCACGTGGTTCCTGAACAGGCAGAGGGACATCAGGGACGGCAAGAAC
ACTCAGCTGTACTCTAACTACCTCGACAACAGCCTCCGTGAGGACATGCA
GCGCATGCGCAAGATCAGGAGCCACCGTGGTATCCGCCACGCCTACGGCC
TCAAGGTGCGCGGCCAGCACACCAAGACCACCGGCAGGCGCGGACGCACC
GTCGGTGTCGCCAAGAAGAAGTAA
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