mRNA_M-pyrifera_M_contig123956.4891.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123956.4891.1
Unique NamemRNA_M-pyrifera_M_contig123956.4891.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123956.4891.1 vs. uniprot
Match: A0A1X2HNX7_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HNX7_SYNRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.330e-7
Identity = 54/176 (30.68%), Postives = 81/176 (46.02%), Query Frame = 1
Query:    1 YMQAVAGGNIEAHFNLALMLERGQGGEEDLEMALELFHVAASADFLEALIRLGIIYGNGDG-VPKDEARSCASLERAVALGSVQAMMMLAM-YHRQTSAGAP---------------RALQLYQRAAALGCTEAISIMADILAEGYGVPADVQKATMLYADASRRGDSWSSFRLGN 477
            +M +   GN++A F +ALML  G G   D   A + +  AA      AL  LG+ Y  G G VP+D  ++    E+A  LG   AM  LAM Y  Q +   P               +A+  +++ A LG   A   +  +   G GVP D Q A  L+  A+ + D+ ++  LG+
Sbjct:  786 FMLSANRGNVDAEFQVALMLSNGTGVPCDRTEAFQWYKNAAEKRHKMALYSLGLYYLKGLGNVPRDMGKARDCFEQAAELGVTDAMAQLAMIYLSQATHPVPALDRARQQQQQQWRDKAIYWFRKGAHLGNHIAQRELGKLHDAGLGVPQDYQIAFRLFEKAAGQKDALATLLLGS 961          
BLAST of mRNA_M-pyrifera_M_contig123956.4891.1 vs. uniprot
Match: UPI000B358207 (sel1 repeat family protein n=1 Tax=Thaumasiovibrio subtropicus TaxID=1891207 RepID=UPI000B358207)

HSP 1 Score: 57.8 bits (138), Expect = 9.990e-7
Identity = 50/156 (32.05%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   22 GNIEAHFNLALMLERGQGGEEDLEMALELFHVAASADF-LEALIRLGIIYGNGDGVPKDEARSCASLERAVALGSVQAMMMLAMYH--RQTSAGAPRALQLYQRAAALGCTEAISIMADILAEGYGVPADVQKATMLYADASRRGDSWSSFRLGNI 480
            G+ EA + +  M     G E+DL  A +LF    SA+F ++A+ RLG +Y  GDG+PK+     A +ERA  +    A  +LA  H     +   P+ L   + A A    +A  +   I A+G   P D +KA  L    +    S     LGNI
Sbjct:  218 GHPEAQYLIGEMYYLALGVEQDLPKAHQLF--LQSAEFNVKAMARLGTMYIQGDGIPKEVQTGLAWVERAAEMNEPYAHYVLAALHVDGDITLDIPQYLHHLEVALAGEIPDAYCLQGMIYADGVHAPLDNEKALTLLNQGAELQSSLCQRALGNI 371          
BLAST of mRNA_M-pyrifera_M_contig123956.4891.1 vs. uniprot
Match: A0A3A9IAY3_9GAMM (Uncharacterized protein n=2 Tax=Aeromonas veronii TaxID=654 RepID=A0A3A9IAY3_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 2.850e-6
Identity = 46/159 (28.93%), Postives = 80/159 (50.31%), Query Frame = 1
Query:    7 QAVAGGNIEAHFNLALMLERGQGGEEDLEMALELFHVAASADFLEALIRLGIIYGNGDGVPKDEARSCASLERAVALGS----VQAMMMLAMYHRQTSAGAPRALQLYQRAAALGCTEAISIMADILAEGYGVPADVQKATMLYADASRRGDSWSSFRL 471
            QAV  G+  A   LA+M    QG  ++ + AL L+  AA+ + L +L+ LG+IY  G+ VPKD+ ++ +   +A  L        + ++LA  H +      + L  Y +AA LG  +A   +A+    G G   + ++A   Y  +++ G+  + F L
Sbjct:  111 QAVDLGDPTAKSLLAIMYLLEQGVIKNPKRALSLYKEAANENELLSLVNLGLIYEEGEIVPKDDNQAQSFFNKAKMLAKERNDANSQLILAYIHEKYG-DKEQTLSSYYKAAELGSADAEYYIANAYIFGIGTSKNEEQAIYWYNKSAKHGNKSAQFEL 268          
BLAST of mRNA_M-pyrifera_M_contig123956.4891.1 vs. uniprot
Match: A0A1J4J3J0_9EUKA (Uncharacterized protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4J3J0_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 3.950e-6
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 YMQAVAGGNIEAHFNLALMLERGQGGEEDLEMALELFHVAASADFLEALIRLGIIYGNG-DGVPKDEARSCASLERAVALGSVQAMMML 264
            Y QA    +++A +NLA  L    G  +D + AL   + A+S D  EAL  LG+IY  G +G+  ++ +S   L+RAV LGS++AM +L
Sbjct: 1732 YNQASTQFSLKAQYNLARCLLYEIGTTQDTQKALGYLYDASSKDLPEALYLLGLIYQKGFNGIEPNDTKSLRYLQRAVRLGSIEAMTLL 1820          
BLAST of mRNA_M-pyrifera_M_contig123956.4891.1 vs. uniprot
Match: A0A7S9GVY3_9BRAD (Sel1 repeat family protein n=1 Tax=Bradyrhizobium genosp. L TaxID=83637 RepID=A0A7S9GVY3_9BRAD)

HSP 1 Score: 52.0 bits (123), Expect = 7.060e-5
Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  142 ALIRLGIIYGNGDGVPKDEARSCASLERAVALGSVQAMMMLAMYHRQTSAGAPRALQLYQRAAALGCTEAISIMADILAEGYGVPADVQKATMLYADAS 438
            A++ LG+ YG G GV KDEA++ A  ERA   G+ + +  LA     T++   RA +L  +AA     EA   +  +LAEG G P D   A  L+  A+
Sbjct:  106 AMVELGVHYGTGAGVAKDEAQARALFERAAQAGNARGVSNLAALGGSTASDPVRARELLGKAAETNA-EAQYQLGMMLAEGKGGPQDDVAARALFEKAA 203          
BLAST of mRNA_M-pyrifera_M_contig123956.4891.1 vs. uniprot
Match: A0A4V1T3S4_9HYPH (CASPASE_P20 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4V1T3S4_9HYPH)

HSP 1 Score: 52.4 bits (124), Expect = 7.170e-5
Identity = 41/120 (34.17%), Postives = 60/120 (50.00%), Query Frame = 1
Query:    7 QAVAGGNIEAHFNLALMLERGQGGEEDLEMALELFHVAASADFLEALIRLGIIYGNGDGVPKDEARSCASLERAVALGSVQAMMMLAMYH---RQTSAGAPRALQLYQRAAALGCTEAIS 357
            +AV  G+  A + LA  L  GQ G  D   AL LF+ AA A    A++R+G+IY NG G  +D A++ A    A+ L        LA  +   R       +A QL+++ AA G   +I+
Sbjct:  443 KAVDLGHPLALYVLADKLLSGQDGPRDASRALALFYRAADAGISGAVVRIGLIYANGQGTGRDHAKAVAFYNLALKLDEPTVYPELAAAYLAGRGVLKDIDKACQLFRQGAAAGNAASIA 562          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123956.4891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A1X2HNX7_SYNRA1.330e-730.68Uncharacterized protein n=1 Tax=Syncephalastrum ra... [more]
UPI000B3582079.990e-732.05sel1 repeat family protein n=1 Tax=Thaumasiovibrio... [more]
A0A3A9IAY3_9GAMM2.850e-628.93Uncharacterized protein n=2 Tax=Aeromonas veronii ... [more]
A0A1J4J3J0_9EUKA3.950e-639.33Uncharacterized protein n=1 Tax=Tritrichomonas foe... [more]
A0A7S9GVY3_9BRAD7.060e-537.37Sel1 repeat family protein n=1 Tax=Bradyrhizobium ... [more]
A0A4V1T3S4_9HYPH7.170e-534.17CASPASE_P20 domain-containing protein n=1 Tax=Hyph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123956contigM-pyrifera_M_contig123956:29..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog1088868.CIN_12620
KEGG koko:K07126
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sel1 domain protein repeat-containing protein
EggNOG OGs1MWPA@1224,2TR2B@28211,COG0790@1,COG0790@2
COG Functional cat.C
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size492
Cds size489
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.6988335-CDS-M-pyrifera_M_contig123956:28..5171622815757.6988335-CDS-M-pyrifera_M_contig123956:28..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123956 29..517 -
1692277555.350726-CDS-M-pyrifera_M_contig123956:28..5171692277555.350726-CDS-M-pyrifera_M_contig123956:28..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123956 29..517 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.7095244-UTR-M-pyrifera_M_contig123956:517..5201622815757.7095244-UTR-M-pyrifera_M_contig123956:517..520Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123956 518..520 -
1692277555.3635771-UTR-M-pyrifera_M_contig123956:517..5201692277555.3635771-UTR-M-pyrifera_M_contig123956:517..520Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123956 518..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123956.4891.1prot_M-pyrifera_M_contig123956.4891.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123956 29..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123956.4891.1

>prot_M-pyrifera_M_contig123956.4891.1 ID=prot_M-pyrifera_M_contig123956.4891.1|Name=mRNA_M-pyrifera_M_contig123956.4891.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MQAVAGGNIEAHFNLALMLERGQGGEEDLEMALELFHVAASADFLEALIR
LGIIYGNGDGVPKDEARSCASLERAVALGSVQAMMMLAMYHRQTSAGAPR
ALQLYQRAAALGCTEAISIMADILAEGYGVPADVQKATMLYADASRRGDS
WSSFRLGNIAEEI
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mRNA from alignment at M-pyrifera_M_contig123956:29..520-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123956.4891.1 ID=mRNA_M-pyrifera_M_contig123956.4891.1|Name=mRNA_M-pyrifera_M_contig123956.4891.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig123956:29..520- (Macrocystis pyrifera P11B4 male)
TACATGCAGGCGGTTGCAGGAGGCAATATTGAAGCCCATTTCAACCTCGC CCTCATGTTGGAGAGGGGGCAAGGAGGTGAGGAGGACCTAGAGATGGCAC TGGAACTCTTCCACGTGGCTGCTTCTGCCGACTTCCTCGAGGCACTCATC CGCCTTGGGATCATTTACGGCAACGGTGATGGTGTGCCCAAGGATGAGGC TAGGTCATGTGCCAGCCTCGAGAGAGCCGTGGCATTGGGCTCGGTCCAGG CAATGATGATGTTGGCGATGTACCACAGGCAAACGTCTGCTGGAGCCCCG CGTGCCCTGCAGCTCTATCAGAGGGCTGCTGCACTGGGCTGCACGGAGGC GATCTCCATAATGGCTGACATCCTCGCCGAAGGCTATGGAGTGCCAGCTG ACGTGCAGAAGGCTACGATGCTCTATGCTGATGCATCTCGCAGAGGAGAC TCCTGGTCCAGTTTTCGCCTCGGCAACATCGCAGAGGAGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123956:29..520-

>mRNA_M-pyrifera_M_contig123956.4891.1 ID=mRNA_M-pyrifera_M_contig123956.4891.1|Name=mRNA_M-pyrifera_M_contig123956.4891.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig123956:29..520- (Macrocystis pyrifera P11B4 male)
ATGCAGGCGGTTGCAGGAGGCAATATTGAAGCCCATTTCAACCTCGCCCT
CATGTTGGAGAGGGGGCAAGGAGGTGAGGAGGACCTAGAGATGGCACTGG
AACTCTTCCACGTGGCTGCTTCTGCCGACTTCCTCGAGGCACTCATCCGC
CTTGGGATCATTTACGGCAACGGTGATGGTGTGCCCAAGGATGAGGCTAG
GTCATGTGCCAGCCTCGAGAGAGCCGTGGCATTGGGCTCGGTCCAGGCAA
TGATGATGTTGGCGATGTACCACAGGCAAACGTCTGCTGGAGCCCCGCGT
GCCCTGCAGCTCTATCAGAGGGCTGCTGCACTGGGCTGCACGGAGGCGAT
CTCCATAATGGCTGACATCCTCGCCGAAGGCTATGGAGTGCCAGCTGACG
TGCAGAAGGCTACGATGCTCTATGCTGATGCATCTCGCAGAGGAGACTCC
TGGTCCAGTTTTCGCCTCGGCAACATCGCAGAGGAGATTATGCAGGCGGT
TGCAGGAGGCAATATTGAAGCCCATTTCAACCTCGCCCTCATGTTGGAGA
GGGGGCAAGGAGGTGAGGAGGACCTAGAGATGGCACTGGAACTCTTCCAC
GTGGCTGCTTCTGCCGACTTCCTCGAGGCACTCATCCGCCTTGGGATCAT
TTACGGCAACGGTGATGGTGTGCCCAAGGATGAGGCTAGGTCATGTGCCA
GCCTCGAGAGAGCCGTGGCATTGGGCTCGGTCCAGGCAATGATGATGTTG
GCGATGTACCACAGGCAAACGTCTGCTGGAGCCCCGCGTGCCCTGCAGCT
CTATCAGAGGGCTGCTGCACTGGGCTGCACGGAGGCGATCTCCATAATGG
CTGACATCCTCGCCGAAGGCTATGGAGTGCCAGCTGACGTGCAGAAGGCT
ACGATGCTCTATGCTGATGCATCTCGCAGAGGAGACTCCTGGTCCAGTTT
TCGCCTCGGCAACATCGCAGAGGAGATT
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