mRNA_M-pyrifera_M_contig123937.4888.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123937.4888.1
Unique NamemRNA_M-pyrifera_M_contig123937.4888.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: D8LNW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW2_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.870e-32
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVDRL 165
            +VGYTGIACRC+YVFCSLHRYP+QHDCTFDFKTSDRNDLKRTVVGGGQFSKV+RL
Sbjct:  216 KVGYTGIACRCDYVFCSLHRYPDQHDCTFDFKTSDRNDLKRTVVGGGQFSKVERL 270
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BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: A0A835YMJ6_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMJ6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.350e-22
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVD 159
            +VG TG+ACRC YV+CS HRYPE+H CT+DFK S+R  L +TVVGGG FSKVD
Sbjct:   67 KVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVD 119
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BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: A0A836CLQ8_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLQ8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.060e-22
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVDRL 165
            +VG TGI CRC  VFC LHRYPE HDC FDFK SDR  L++ V+GGG FSKVDRL
Sbjct:   98 KVGLTGIECRCKLVFCGLHRYPESHDCGFDFKASDRLALEKVVLGGGAFSKVDRL 152
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BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: A0A836CDM0_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDM0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.830e-21
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVDRL 165
            +VG TG+ C+C YVFCS HRYPE+H C++DF+ SDR  L +TVVGGGQF KV ++
Sbjct:   64 KVGLTGLECKCGYVFCSKHRYPEEHSCSYDFRASDRAQLAKTVVGGGQFIKVAQI 118
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BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: A0A2D4C9V6_PYTIN (Zinc-finger containing protein, partial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9V6_PYTIN)

HSP 1 Score: 84.7 bits (208), Expect = 1.020e-19
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVDRL 165
            +VG T I CRC YVFCS HRYP+QH+C+FDFK +DR +L R   GGGQF K+++L
Sbjct:   80 KVGLTAIECRCGYVFCSGHRYPDQHNCSFDFKAADRAELARRNPGGGQFGKLEKL 134
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BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: A0A421GSI5_9STRA (AN1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GSI5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.700e-19
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVDRL 165
            +VG T I CRC YVFCS HRY +QH C+FDFKT+DR +L R   GGGQF K+++L
Sbjct:   77 KVGLTAIECRCGYVFCSNHRYADQHSCSFDFKTADRAELARRNPGGGQFGKLEKL 131
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BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: H6S3Z9_PLAVT (Zinc-finger containing protein (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S3Z9_PLAVT)

HSP 1 Score: 84.0 bits (206), Expect = 3.470e-19
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVDRL 165
            +VG T I CRC YVFCS HR+ +QH CTFDFKT+DR +L R   GGG+FSK+++L
Sbjct:  101 KVGLTAIECRCGYVFCSSHRFEDQHSCTFDFKTADRAELARRNPGGGKFSKLEKL 155
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BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: H3G9H4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9H4_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 9.160e-19
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVDRL 165
            +VG T I CRC YVFCS HRY +QH+C+FDFK SDR +L R   GGGQF K+++L
Sbjct:   98 KVGLTAIECRCGYVFCSGHRYADQHNCSFDFKASDRAELARRNPGGGQFGKLEKL 152
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BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: W2J011_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2J011_PHYPR)

HSP 1 Score: 82.8 bits (203), Expect = 1.010e-18
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVDRL 165
            +VG T I CRC YVFCS HR+ +QH+CTFDFK +DR +L R   GGG+FSK+++L
Sbjct:  102 KVGLTAIECRCGYVFCSSHRFEDQHNCTFDFKAADRAELARRNPGGGEFSKLEKL 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Match: A0A836CMZ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.010e-18
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFSKVDRL 165
            + G TGI C+C  VFCSLHR+PE H+C FDFK   R  L+R V+GGG FSKVDRL
Sbjct:  185 KTGLTGIECKCKLVFCSLHRHPEAHNCAFDFKEDGRRALERVVLGGGAFSKVDRL 239
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123937.4888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNW2_ECTSI3.870e-3292.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMJ6_9STRA1.350e-2269.81AN1-type domain-containing protein n=1 Tax=Tribone... [more]
A0A836CLQ8_9STRA3.060e-2270.91AN1-type domain-containing protein n=1 Tax=Tribone... [more]
A0A836CDM0_9STRA5.830e-2161.82AN1-type domain-containing protein n=1 Tax=Tribone... [more]
A0A2D4C9V6_PYTIN1.020e-1961.82Zinc-finger containing protein, partial n=1 Tax=Py... [more]
A0A421GSI5_9STRA2.700e-1961.82AN1-type domain-containing protein n=3 Tax=Phytoph... [more]
H6S3Z9_PLAVT3.470e-1961.82Zinc-finger containing protein (Fragment) n=1 Tax=... [more]
H3G9H4_PHYRM9.160e-1961.82Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
W2J011_PHYPR1.010e-1860.00Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A836CMZ9_9STRA1.010e-1863.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123937contigM-pyrifera_M_contig123937:196..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue9.2e-25
Seed eggNOG ortholog2880.D8LNW2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG3173@1,KOG3173@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.5090873-CDS-M-pyrifera_M_contig123937:195..3631622815757.5090873-CDS-M-pyrifera_M_contig123937:195..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123937 196..363 +
1692277555.2496986-CDS-M-pyrifera_M_contig123937:195..3631692277555.2496986-CDS-M-pyrifera_M_contig123937:195..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123937 196..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123937.4888.1prot_M-pyrifera_M_contig123937.4888.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123937 196..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123937.4888.1

>prot_M-pyrifera_M_contig123937.4888.1 ID=prot_M-pyrifera_M_contig123937.4888.1|Name=mRNA_M-pyrifera_M_contig123937.4888.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
QVGYTGIACRCNYVFCSLHRYPEQHDCTFDFKTSDRNDLKRTVVGGGQFS
KVDRL*
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mRNA from alignment at M-pyrifera_M_contig123937:196..363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123937.4888.1 ID=mRNA_M-pyrifera_M_contig123937.4888.1|Name=mRNA_M-pyrifera_M_contig123937.4888.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig123937:196..363+ (Macrocystis pyrifera P11B4 male)
CAGGTGGGATACACGGGCATCGCCTGCCGCTGCAACTACGTGTTCTGCTC
TCTCCACCGGTACCCAGAACAACATGACTGCACCTTCGACTTCAAAACAT
CCGACCGCAACGACCTCAAGAGGACAGTCGTCGGGGGCGGGCAGTTCAGC
AAAGTCGATCGCCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123937:196..363+

>mRNA_M-pyrifera_M_contig123937.4888.1 ID=mRNA_M-pyrifera_M_contig123937.4888.1|Name=mRNA_M-pyrifera_M_contig123937.4888.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig123937:196..363+ (Macrocystis pyrifera P11B4 male)
CAGGTGGGATACACGGGCATCGCCTGCCGCTGCAACTACGTGTTCTGCTC
TCTCCACCGGTACCCAGAACAACATGACTGCACCTTCGACTTCAAAACAT
CCGACCGCAACGACCTCAAGAGGACAGTCGTCGGGGGCGGGCAGTTCAGC
AAAGTCGATCGCCTCTGACAGGTGGGATACACGGGCATCGCCTGCCGCTG
CAACTACGTGTTCTGCTCTCTCCACCGGTACCCAGAACAACATGACTGCA
CCTTCGACTTCAAAACATCCGACCGCAACGACCTCAAGAGGACAGTCGTC
GGGGGCGGGCAGTTCAGCAAAGTCGATCGCCTCTGA
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