mRNA_M-pyrifera_M_contig12388.4886.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12388.4886.1
Unique NamemRNA_M-pyrifera_M_contig12388.4886.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12388.4886.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.980e-79
Identity = 112/197 (56.85%), Postives = 149/197 (75.63%), Query Frame = 1 
Query:    1 LVRPKHAAVSCSHFWATALMVSGVAGFIVGAVLLSEWGGLGSFWVGLMAVGSGVAGVYITHNEPSGGTATVFFGLLSFATLVAATVSIMLGEGVAYLVVRETGGNCFESDGCPVGSCGDDQCVCWEPDASEACSGGSSLRYCMRYGGDRCSDIKDSESLLLGSTVTIGIIAVFALCSVLVAVNTCWFCKRVIVVDSN 591
            +VRPKHAA+SCSH WA AL+V G++  +VG ++ +EW G+GSFWVG +A+ +G +G+Y+T  E SGG ATVF+ LLS  TL A+ VSI LGEG  +L+VR+  GNC + D CP   C +D CVCWEPD ++ CS   S+RYC+ +GGD CSDIKDSE+LLLGS + + IIA  +  S++VAVNTCW+CKR IVV+S+
Sbjct:   20 MVRPKHAAISCSHLWANALVVVGLSSVVVGVIIFTEWKGMGSFWVGAVAMAAGTSGIYVTQGEASGGLATVFYALLSLVTLAASVVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEDACVCWEPDGTDVCSDAGSVRYCVPFGGDSCSDIKDSENLLLGSFIILVIIAFCSFWSLVVAVNTCWYCKRTIVVESS 216
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BLAST of mRNA_M-pyrifera_M_contig12388.4886.1 vs. uniprot
Match: D7G5U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.920e-39
Identity = 81/189 (42.86%), Postives = 107/189 (56.61%), Query Frame = 1 
Query:    1 LVRPKHAAVSCSHFWATALMVSGVAGFIVGAVLLSEWGGLGSFWVGLMAVGSGVAGVYITHNEPSGGTATVFFGLLSFATLVAATVSIMLGEGVAYLVVRETGGNCFESDGCPVGSCGDDQCVCWEPDASEACSGGSSLRYCMRYGGDRCSDIKDSESLLLGSTVTIGIIAVFALCSVLVAVNTCWFCK 567
            L RP    V  SH     L+ +G A  +VGA++ ++W   G FWVG MA+ +GVAG  ++  E SGG  T  F   S   LVAAT+S++L +G+ Y  V+ T GNC ++  C    CG   CVCWEPD S  C  G+S R C++Y G  C +I+DSESLL  ST    II      ++LV   TC  CK
Sbjct:   36 LTRPFPRIVKASHVLGWILVAAGSAEIVVGALIFNDWKYAGGFWVGFMALAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVQSTEGNCVDTSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRTCLQYQGSSCDEIEDSESLLAASTFLHIIIMALVAIAMLVTSATCCGCK 224
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BLAST of mRNA_M-pyrifera_M_contig12388.4886.1 vs. uniprot
Match: A0A6H5KT21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT21_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.380e-21
Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 1 
Query:  142 MAVGSGVAGVYITHNEPSGGTATVFFGLLSFATLVAATVSIMLGEGVAYLVVRETGGNCFESDGCPVGSCGDDQCVCWEPDASEACSGGSSLRYCMRYGGDRCSDIK 462
            MA  +GVAG  ++  E SGG  T  F   S   LVAAT+S++L +G+ Y  V  T GNC E+  C    CG   CVCWEPD S  C  G+S R C++Y G  C DI+
Sbjct:    1 MAFAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVHSTEGNCVETSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRKCLQYQGGSCDDIE 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12388.4886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KV47_9PHAE1.980e-7956.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U1_ECTSI2.920e-3942.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT21_9PHAE3.380e-2145.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12388contigM-pyrifera_M_contig12388:5981..9195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_009140.1
Exons5
Model size591
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12388.4886.1prot_M-pyrifera_M_contig12388.4886.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12388 5981..9195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.2905715-CDS-M-pyrifera_M_contig12388:5980..61091622815757.2905715-CDS-M-pyrifera_M_contig12388:5980..6109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 5981..6109 -
1692277555.0863454-CDS-M-pyrifera_M_contig12388:5980..61091692277555.0863454-CDS-M-pyrifera_M_contig12388:5980..6109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 5981..6109 -
1622815757.3009934-CDS-M-pyrifera_M_contig12388:6431..65431622815757.3009934-CDS-M-pyrifera_M_contig12388:6431..6543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 6432..6543 -
1692277555.0971816-CDS-M-pyrifera_M_contig12388:6431..65431692277555.0971816-CDS-M-pyrifera_M_contig12388:6431..6543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 6432..6543 -
1622815757.3119922-CDS-M-pyrifera_M_contig12388:7249..73161622815757.3119922-CDS-M-pyrifera_M_contig12388:7249..7316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 7250..7316 -
1692277555.1075587-CDS-M-pyrifera_M_contig12388:7249..73161692277555.1075587-CDS-M-pyrifera_M_contig12388:7249..7316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 7250..7316 -
1622815757.325027-CDS-M-pyrifera_M_contig12388:7880..80571622815757.325027-CDS-M-pyrifera_M_contig12388:7880..8057Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 7881..8057 -
1692277555.120339-CDS-M-pyrifera_M_contig12388:7880..80571692277555.120339-CDS-M-pyrifera_M_contig12388:7880..8057Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 7881..8057 -
1622815757.335939-CDS-M-pyrifera_M_contig12388:9089..91951622815757.335939-CDS-M-pyrifera_M_contig12388:9089..9195Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 9090..9195 -
1692277555.1403518-CDS-M-pyrifera_M_contig12388:9089..91951692277555.1403518-CDS-M-pyrifera_M_contig12388:9089..9195Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12388 9090..9195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12388.4886.1

>prot_M-pyrifera_M_contig12388.4886.1 ID=prot_M-pyrifera_M_contig12388.4886.1|Name=mRNA_M-pyrifera_M_contig12388.4886.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
LVRPKHAAVSCSHFWATALMVSGVAGFIVGAVLLSEWGGLGSFWVGLMAV
GSGVAGVYITHNEPSGGTATVFFGLLSFATLVAATVSIMLGEGVAYLVVR
ETGGNCFESDGCPVGSCGDDQCVCWEPDASEACSGGSSLRYCMRYGGDRC
SDIKDSESLLLGSTVTIGIIAVFALCSVLVAVNTCWFCKRVIVVDSN
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mRNA from alignment at M-pyrifera_M_contig12388:5981..9195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12388.4886.1 ID=mRNA_M-pyrifera_M_contig12388.4886.1|Name=mRNA_M-pyrifera_M_contig12388.4886.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3215bp|location=Sequence derived from alignment at M-pyrifera_M_contig12388:5981..9195- (Macrocystis pyrifera P11B4 male)
TTGGTTAGGCCAAAGCATGCCGCTGTCAGCTGCTCACACTTCTGGGCTAC
CGCGCTTATGGTGTCTGGGGTAGCCGGGTTCATTGTCGGGGCTGTCCTGC
TCAGCGGTGAGGCTTTTACTGCAGTTTGGAGGCGGTGGTGGTTAGGGGAG
ACAGGGTGGGGTGTCGATGATGGACGGGCTTGCGTGCGCTCTTGCTACCG
CAAGCGTTGTACCGCCGTTTGGTTTTGGGCTGGATTAGGCAAGACTACTG
TAGATTGTGCGGTTAATTTTGGTTGAAAAATGAAAAAAGATCTTCAAGTT
GCGTGTTGTGTCAAAGGGTTGATGCGGGAAACGATGCAAATGACACTTCA
TCGGGCACACACTTCGGCTTTTGGACCAGACGGCCAGATGTGACGCTCGA
AGTTGCCCTTTACCGTTTCTTTTTCACTGTTCGTTTTGTGCTGTCTCTGA
CCGGAGAGCACAGATGCTTAGCTTTCGTATTCAACGGTGCCTGTCTCGGC
GAATATTGGTCCCTGGAATGACGGCGAATGTTAGGCCCTCCCCTGTCCGA
GTCAGGGTTGTTCCCGAATGTGTATCGCCTGTCACGGTGGGGGGGGGAGC
CCGTGGCAAGCTTTGTCTGCCTCGTTGAAGTGTTGGCCCCTACGAAGCCC
CTACCAAAGTGTCCGTCCCAACCCAGAGCTTCAGCTATAGGCTCAACGCT
CCAACGAATAACAGGCTGCTACGTACATGGTGACCACACAGATCCTACGC
CCCAGAAAGGCGTGTCTAAGCCCCGTCCCTTCCGGATATCGCTGATCGCC
CAACGGATTTGTAAATATATATACACACCCTTTGGTTTTGTTGGTGGTTG
GTTCGAATTTTTTCTGGGGTGGGGGCGTTGTATTTATCATCTATAACCTT
AACCCCAAATACCCCAAACACGTCATTAATGAAACCAAAATATCGTGAGT
CCACCTTGAGAAGCATCCGGGGGGTATGCAGGGATATTTTTGCAAACCTG
TTTTTGCATTTAGAAGTGGGCATGTCTTTCCCTCTTTTCACGTATTCGCT
ACATCCACCGGTTCACCCCTGAAACCTCCGTCGTGTTTCTATCGTCGTTT
TCTTTCTTACCTGGTACGTTTTTTGCACCGCGCGACAGAGTGGGGAGGCT
TAGGGTCCTTCTGGGTGGGGTTGATGGCGGTCGGGTCCGGAGTAGCCGGG
GTGTACATCACGCATAACGAGCCCTCCGGAGGCACGGCTACCGTGTTCTT
CGGTCTCCTTTCTTTCGCCACCCTCGTCGCGGCAACGGTTTCCATCATGC
TGGGCGAAGGCGTTGGTGAGATGGATGAACGGGGGGGGGAGGGGGGGATG
TATACGTTTTTGTTGATTGCCAGCAACGGTACTAGACTTTTCATTGTTGA
AAAAATGTAGACTAAATATTTCCCTGCCCCCGGCGCAGGCCCCGCCCCTC
GCCCACTTCGATATATTGTTAGTAGTGGTCCATCTATAGCGCCGGTTGCC
CGCGTTTGTCCTGTGGAATCGCTTGGCACAGATGGGATTCACCAGTGTTG
TAGTGCCGGTTGCCGTTGTAAATATTGCCGGTTTTGTTGACTGGTTCATA
CCGGCACTGCGTATTGAGGGACCACAACTGTATATAGACGGGGGTTTTCT
CTCCTTTGTTTTGGTTTCATTTTTATATTGTACCGCAACCCACCGCCAAA
GACGTAAAAGGTACAACTGTAATCGATGCGTTATTTGCTTTTCCTGCCTT
TTAATATTAATAGAAGCGGTGCGTCCGTCCTACCCCCGCCCCCCCCTCCC
TCTTCCTCTATGTATGTTTGTCCGGCTCTCCTCTCGCCGGGCAACCCGTC
CGCGCGGCTTGCGGGAACGATTCGGGCAGCCTATCTCGTGGTTCGGGAAA
CGGGGGGGAACTGCTTCGAAAGCGACGGCTGTCCTGTGGGCTCCTGGTAA
GTACTGTGTGTTGCTGTTTTTTTTAGGGGGCAGTACTGTATTTCGGAAGA
ACGAACGTATATAGTGATTAGAACAAATCTGGTGTGTAAACATGGGGGAA
TATATATATATATATATATTATTGGGTCCATCTTGAGTTCTGATTTATAC
TACCCCTCGTATTAGCAGTAGTACGTACGACTACTACTCGGAGCGTGGCG
AAAGCGCTGCTGTGTGCTGTCGATCTTGACGTCCCCGTCATGTCGTACTG
TCCTTTGGTGTGGCAGCGAACAAACGCGGACCGGTTTCATTGCAAACCCA
AACTGCCGTACAGCCTGCGTTTCGGTACGCATTCATGGTACCGTTGAGGG
TACCGTTAATTTCACCGTTAAGGTCACGATTAGAAACGCCATGGTAGAGG
TGACCGTTAATTTCACCGTATATATAGATGAACGTTAAGATCCCCATTGA
GGCCACCCTTACGGTCACGCTAAGATCGCCATCGCGATGAACGTTACTGT
CACCCGTAAGTTCAACATGAAAATGACTGGTAAGATGGCCACTTAATCAC
CGTCACGTTCACCGTCAAGATAGCCTTCTAAGGTGACCGTTGAGGCGACC
GGGAGAAAGTCGGCGGGGCATGGAAGCGAGCGAGACAGTCACGTGACGCG
AGCGTGCTCCCCTTCCTCCCTACCCTTCATGTGCCTTTTTGTTTCGGCGT
AGCGGTGATGACCAATGTGTGTGCTGGGAACCGGACGCGTCGGAGGCGTG
CTCGGGCGGCAGTAGCCTTAGGTACTGCATGCGGTACGGAGGGGACCGAT
GTAGCGACATCAAGGTGAGAGAAATGGCGAAGAAAACATTACGCGTATTG
ATCTCTCTTACGAGGCGTGGGACCCAATTACTGATATTTAATTGATCGAG
TAGTGGTGTTTGGTGGGGTCATGTGGTTTGGGGTTGGGTTGGTCCGCTGT
GTCTCGTGCGCAAAGTCTGTAAACCATCGTGGTAAATCCCCCCCTCCCCC
CGGCCGCTGCGGATAGTAGAAAACCTCCTCCTTTTCGCCTCATTTCACGG
CGGTAGACTCAGCCGGACAAGCTCGCTTCGTTTTCGTCATGCGGCTGATT
TTCACTTTTCTTTTCTTTTTGCTCGTTTCTCCACAGGATTCAGAGAGCCT
CCTATTGGGCTCGACGGTTACCATTGGGATCATCGCGGTTTTCGCGCTCT
GCTCCGTCCTGGTGGCCGTCAACACGTGCTGGTTCTGTAAGCGAGTTATC
GTCGTTGACTCCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12388:5981..9195-

>mRNA_M-pyrifera_M_contig12388.4886.1 ID=mRNA_M-pyrifera_M_contig12388.4886.1|Name=mRNA_M-pyrifera_M_contig12388.4886.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig12388:5981..9195- (Macrocystis pyrifera P11B4 male)
TTGGTTAGGCCAAAGCATGCCGCTGTCAGCTGCTCACACTTCTGGGCTAC
CGCGCTTATGGTGTCTGGGGTAGCCGGGTTCATTGTCGGGGCTGTCCTGC
TCAGCGTTGGTTAGGCCAAAGCATGCCGCTGTCAGCTGCTCACACTTCTG
GGCTACCGCGCTTATGGTGTCTGGGGTAGCCGGGTTCATTGTCGGGGCTG
TCCTGCTCAGCGAGTGGGGAGGCTTAGGGTCCTTCTGGGTGGGGTTGATG
GCGGTCGGGTCCGGAGTAGCCGGGGTGTACATCACGCATAACGAGCCCTC
CGGAGGCACGGCTACCGTGTTCTTCGGTCTCCTTTCTTTCGCCACCCTCG
TCGCGGCAACGGTTTCCATCATGCTGGGCGAAGGCGTTGAGTGGGGAGGC
TTAGGGTCCTTCTGGGTGGGGTTGATGGCGGTCGGGTCCGGAGTAGCCGG
GGTGTACATCACGCATAACGAGCCCTCCGGAGGCACGGCTACCGTGTTCT
TCGGTCTCCTTTCTTTCGCCACCCTCGTCGCGGCAACGGTTTCCATCATG
CTGGGCGAAGGCGTTGCCTATCTCGTGGTTCGGGAAACGGGGGGGAACTG
CTTCGAAAGCGACGGCTGTCCTGTGGGCTCCTGCCTATCTCGTGGTTCGG
GAAACGGGGGGGAACTGCTTCGAAAGCGACGGCTGTCCTGTGGGCTCCTG
CGGTGATGACCAATGTGTGTGCTGGGAACCGGACGCGTCGGAGGCGTGCT
CGGGCGGCAGTAGCCTTAGGTACTGCATGCGGTACGGAGGGGACCGATGT
AGCGACATCAAGCGGTGATGACCAATGTGTGTGCTGGGAACCGGACGCGT
CGGAGGCGTGCTCGGGCGGCAGTAGCCTTAGGTACTGCATGCGGTACGGA
GGGGACCGATGTAGCGACATCAAGGATTCAGAGAGCCTCCTATTGGGCTC
GACGGTTACCATTGGGATCATCGCGGTTTTCGCGCTCTGCTCCGTCCTGG
TGGCCGTCAACACGTGCTGGTTCTGTAAGCGAGTTATCGTCGTTGACTCC
AATGATTCAGAGAGCCTCCTATTGGGCTCGACGGTTACCATTGGGATCAT
CGCGGTTTTCGCGCTCTGCTCCGTCCTGGTGGCCGTCAACACGTGCTGGT
TCTGTAAGCGAGTTATCGTCGTTGACTCCAAT
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