mRNA_M-pyrifera_M_contig123861.4883.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123861.4883.1
Unique NamemRNA_M-pyrifera_M_contig123861.4883.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A518A516_9PLAN (Ribose transport system permease protein RbsC n=14 Tax=Planctomycetaceae TaxID=126 RepID=A0A518A516_9PLAN)

HSP 1 Score: 166 bits (420), Expect = 8.270e-49
Identity = 87/90 (96.67%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG 270
            QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSV+NTFFGVLIIAVLQTGLAQIGATDP+KRVITGAVIIVAVLLDAAR+RWKRGG
Sbjct:  246 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVVNTFFGVLIIAVLQTGLAQIGATDPIKRVITGAVIIVAVLLDAARRRWKRGG 335
[Close]
BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A517WW24_9PLAN (Ribose transport system permease protein RbsC n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WW24_9PLAN)

HSP 1 Score: 162 bits (409), Expect = 3.600e-47
Identity = 85/90 (94.44%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG 270
            QTSRLSTADPNAAVGLEL+AIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQ+GA+DP+KRVITGAVIIVAVLLDAARQRWKR G
Sbjct:  245 QTSRLSTADPNAAVGLELAAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQVGASDPIKRVITGAVIIVAVLLDAARQRWKRRG 334
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BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A517V9F1_9PLAN (Ribose transport system permease protein RbsC n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V9F1_9PLAN)

HSP 1 Score: 161 bits (407), Expect = 7.360e-47
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG 270
            QTSRLS+ADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGV+IIAVLQTGLAQIGATDP KRVITGAVIIVAVLLDAARQRWKR G
Sbjct:  246 QTSRLSSADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVMIIAVLQTGLAQIGATDPSKRVITGAVIIVAVLLDAARQRWKRRG 335
[Close]
BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A7W1J1H0_9BACT (ABC transporter permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1J1H0_9BACT)

HSP 1 Score: 147 bits (372), Expect = 1.030e-41
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG 270
            QT+RLSTADPNAA+G+ELSAIAACVIGGTSLMGGRGS++ TFFGVLIIAVLQTGLA +GA++PLKRVITGAVI+ AVLLDA RQRW R G
Sbjct:  237 QTARLSTADPNAAIGMELSAIAACVIGGTSLMGGRGSIVATFFGVLIIAVLQTGLANVGASEPLKRVITGAVIVAAVLLDALRQRWGRTG 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: UPI001EE865B2 (ABC transporter permease n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE865B2)

HSP 1 Score: 143 bits (361), Expect = 4.640e-40
Identity = 74/87 (85.06%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWK 261
            QTSRLS+ADPNAAVGLEL+AIAACVIGGTSLMGGRGSVI+TFFGVLIIAVLQTGLA +GATDP+KR+ITG VI++AVLLDA RQR +
Sbjct:  236 QTSRLSSADPNAAVGLELAAIAACVIGGTSLMGGRGSVIHTFFGVLIIAVLQTGLAHVGATDPIKRIITGGVIVIAVLLDALRQRKR 322
[Close]
BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A7W1YJQ2_9BACT (ABC transporter permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1YJQ2_9BACT)

HSP 1 Score: 138 bits (347), Expect = 5.880e-40
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKR 264
            QT+RLSTADPNAAVGLELSAIAACVIGGTSL+GGRGSV+ T FGVLIIAVLQTGLAQ+G+++PLKRVITGAVI+ AVLLDA R R  R
Sbjct:   63 QTARLSTADPNAAVGLELSAIAACVIGGTSLLGGRGSVVATCFGVLIIAVLQTGLAQVGSSEPLKRVITGAVIVAAVLLDALRTRMSR 150
[Close]
BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A518ITX8_9BACT (Ribose transport system permease protein RbsC n=4 Tax=Rosistilla TaxID=2795779 RepID=A0A518ITX8_9BACT)

HSP 1 Score: 139 bits (351), Expect = 1.230e-38
Identity = 71/84 (84.52%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:    7 SRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRW 258
            SRLSTADPNAA+GLELSAIAACVIGGTSLMGGRG+VIN+F GVLIIAVLQTGLAQIG +DP+K++ITG+VI+VAVLLDA R RW
Sbjct:  231 SRLSTADPNAAIGLELSAIAACVIGGTSLMGGRGNVINSFLGVLIIAVLQTGLAQIGVSDPMKQIITGSVIVVAVLLDAIRSRW 314
[Close]
BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A518B5F7_9BACT (Ribose transport system permease protein RbsC n=1 Tax=Planctomycetes bacterium Pan216 TaxID=2527975 RepID=A0A518B5F7_9BACT)

HSP 1 Score: 139 bits (350), Expect = 2.410e-38
Identity = 70/88 (79.55%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKR 264
            QTSRLS+ADPNAAVGLEL+AIAACVIGGTSL GGRGS+I+TFFGVL+I VLQTGLAQ+GA+DP KR+ITG+VI+VAVLLDA R+ W +
Sbjct:  245 QTSRLSSADPNAAVGLELAAIAACVIGGTSLAGGRGSIISTFFGVLMITVLQTGLAQVGASDPTKRIITGSVIVVAVLLDALRRNWGK 332
[Close]
BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A5C6F2B5_9BACT (Ribose transport system permease protein RbsC n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6F2B5_9BACT)

HSP 1 Score: 138 bits (348), Expect = 3.380e-38
Identity = 72/89 (80.90%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    7 SRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRW--KRG 267
            SRLSTADPNAA+GLELSAIAACVIGGTSLMGGRG+VIN+F GVLIIAVLQTGLAQ+G +DP+K++ITG VI+VAVLLDA R RW  +RG
Sbjct:  231 SRLSTADPNAAMGLELSAIAACVIGGTSLMGGRGNVINSFLGVLIIAVLQTGLAQVGVSDPMKQIITGTVIVVAVLLDAMRSRWGHRRG 319
[Close]
BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A5C5WTL7_9BACT (Ribose transport system permease protein RbsC n=1 Tax=Rubripirellula amarantea TaxID=2527999 RepID=A0A5C5WTL7_9BACT)

HSP 1 Score: 137 bits (344), Expect = 1.390e-37
Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWK 261
            QTSRL++ADPNAA+G+ELSAIAACVIGGTSLMGGRGSVI++F GVLIIAVLQTGLAQIG +D  K++ITGAVIIVAVLLDAAR RW 
Sbjct:  229 QTSRLASADPNAAIGIELSAIAACVIGGTSLMGGRGSVISSFIGVLIIAVLQTGLAQIGVSDANKQIITGAVIIVAVLLDAARIRWS 315
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518A516_9PLAN8.270e-4996.67Ribose transport system permease protein RbsC n=14... [more]
A0A517WW24_9PLAN3.600e-4794.44Ribose transport system permease protein RbsC n=2 ... [more]
A0A517V9F1_9PLAN7.360e-4795.56Ribose transport system permease protein RbsC n=5 ... [more]
A0A7W1J1H0_9BACT1.030e-4183.33ABC transporter permease n=1 Tax=Planctomycetes ba... [more]
UPI001EE865B24.640e-4085.06ABC transporter permease n=1 Tax=Rubinisphaera sp.... [more]
A0A7W1YJQ2_9BACT5.880e-4082.95ABC transporter permease n=1 Tax=Planctomycetes ba... [more]
A0A518ITX8_9BACT1.230e-3884.52Ribose transport system permease protein RbsC n=4 ... [more]
A0A518B5F7_9BACT2.410e-3879.55Ribose transport system permease protein RbsC n=1 ... [more]
A0A5C6F2B5_9BACT3.380e-3880.90Ribose transport system permease protein RbsC n=1 ... [more]
A0A5C5WTL7_9BACT1.390e-3782.76Ribose transport system permease protein RbsC n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123861contigM-pyrifera_M_contig123861:3..275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score160.2
Seed ortholog evalue4.5e-37
Seed eggNOG ortholog344747.PM8797T_01064
Preferred namerbsC
KEGG koko:K10440
KEGG TC3.A.1.2.1,3.A.1.2.13,3.A.1.2.19
KEGG Pathwayko02010,map02010
KEGG ModuleM00212
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the binding-protein-dependent transport system permease family
EggNOG OGs2IZWQ@203682,COG1172@1,COG1172@2
COG Functional cat.G
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.150587-CDS-M-pyrifera_M_contig123861:2..2751622815757.150587-CDS-M-pyrifera_M_contig123861:2..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123861 3..275 +
1692277555.0306423-CDS-M-pyrifera_M_contig123861:2..2751692277555.0306423-CDS-M-pyrifera_M_contig123861:2..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123861 3..275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123861.4883.1prot_M-pyrifera_M_contig123861.4883.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123861 3..275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123861.4883.1

>prot_M-pyrifera_M_contig123861.4883.1 ID=prot_M-pyrifera_M_contig123861.4883.1|Name=mRNA_M-pyrifera_M_contig123861.4883.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAV
LQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG*
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mRNA from alignment at M-pyrifera_M_contig123861:3..275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123861.4883.1 ID=mRNA_M-pyrifera_M_contig123861.4883.1|Name=mRNA_M-pyrifera_M_contig123861.4883.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig123861:3..275+ (Macrocystis pyrifera P11B4 male)
CAGACCTCGCGACTCTCAACGGCAGATCCGAACGCGGCGGTGGGACTCGA
ACTTTCGGCGATTGCGGCCTGTGTGATTGGCGGGACGAGTCTGATGGGCG
GCCGGGGTTCAGTGATTAATACGTTCTTCGGCGTGCTGATCATCGCGGTG
CTGCAGACAGGGCTGGCCCAGATTGGGGCGACCGATCCTCTCAAGCGGGT
GATCACCGGAGCGGTGATTATCGTCGCGGTGCTGCTGGATGCGGCGCGGC
AGCGATGGAAACGTGGTGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123861:3..275+

>mRNA_M-pyrifera_M_contig123861.4883.1 ID=mRNA_M-pyrifera_M_contig123861.4883.1|Name=mRNA_M-pyrifera_M_contig123861.4883.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig123861:3..275+ (Macrocystis pyrifera P11B4 male)
CAGACCTCGCGACTCTCAACGGCAGATCCGAACGCGGCGGTGGGACTCGA
ACTTTCGGCGATTGCGGCCTGTGTGATTGGCGGGACGAGTCTGATGGGCG
GCCGGGGTTCAGTGATTAATACGTTCTTCGGCGTGCTGATCATCGCGGTG
CTGCAGACAGGGCTGGCCCAGATTGGGGCGACCGATCCTCTCAAGCGGGT
GATCACCGGAGCGGTGATTATCGTCGCGGTGCTGCTGGATGCGGCGCGGC
AGCGATGGAAACGTGGTGGTTGACAGACCTCGCGACTCTCAACGGCAGAT
CCGAACGCGGCGGTGGGACTCGAACTTTCGGCGATTGCGGCCTGTGTGAT
TGGCGGGACGAGTCTGATGGGCGGCCGGGGTTCAGTGATTAATACGTTCT
TCGGCGTGCTGATCATCGCGGTGCTGCAGACAGGGCTGGCCCAGATTGGG
GCGACCGATCCTCTCAAGCGGGTGATCACCGGAGCGGTGATTATCGTCGC
GGTGCTGCTGGATGCGGCGCGGCAGCGATGGAAACGTGGTGGTTGA
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