mRNA_M-pyrifera_M_contig12385.4881.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12385.4881.1
Unique NamemRNA_M-pyrifera_M_contig12385.4881.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12385.4881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12385contigM-pyrifera_M_contig12385:275..915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size641
Cds size354
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.0487905-UTR-M-pyrifera_M_contig12385:274..5611622815757.0487905-UTR-M-pyrifera_M_contig12385:274..561Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12385 275..561 +
1692277554.985764-UTR-M-pyrifera_M_contig12385:274..5611692277554.985764-UTR-M-pyrifera_M_contig12385:274..561Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12385 275..561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.0602417-CDS-M-pyrifera_M_contig12385:561..9151622815757.0602417-CDS-M-pyrifera_M_contig12385:561..915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12385 562..915 +
1692277554.9962747-CDS-M-pyrifera_M_contig12385:561..9151692277554.9962747-CDS-M-pyrifera_M_contig12385:561..915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12385 562..915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12385.4881.1prot_M-pyrifera_M_contig12385.4881.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12385 562..915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12385.4881.1

>prot_M-pyrifera_M_contig12385.4881.1 ID=prot_M-pyrifera_M_contig12385.4881.1|Name=mRNA_M-pyrifera_M_contig12385.4881.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MQQPSRTHVCGNVNKLGSPHFFDVFKYIFPDLLGFIAAESSDVSVRLEKI
HKTVYRGVFRRYIKEKSAKENQSGTSLTVYRLLSPRYTVLCRIQVQACPS
DSKKGRNRFSIPTGHSF*
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mRNA from alignment at M-pyrifera_M_contig12385:275..915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12385.4881.1 ID=mRNA_M-pyrifera_M_contig12385.4881.1|Name=mRNA_M-pyrifera_M_contig12385.4881.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=641bp|location=Sequence derived from alignment at M-pyrifera_M_contig12385:275..915+ (Macrocystis pyrifera P11B4 male)
CTGCGTTGATGATATCTCATATTATTCCGGTCGCCTCTTAAGCAGGCAGT
CAAGGCGGGCAGGAAGGCAGGCATTTGAGAAACAAATGAAACTACCACAC
TCCCTAAACCACCTCCAGACACGAATGGGCTCTGGGAGACGATGTCATCC
CTTATAGGCCCGTCTCTCGTCACACTTCCCCCCTTGCACGATCTTAAATA
ATAACTCGGTGACTCATTGAAATATTTTAGCAAGTGGTCGCGTAGTGTAG
GGAGGGAACCAGTCAAGGGGTCACACCGCGAAATCCTATGCAACAACCCA
GCCGGACACACGTATGCGGAAACGTGAATAAATTGGGTTCGCCACATTTC
TTCGACGTATTCAAGTATATATTCCCCGATTTACTGGGGTTCATTGCGGC
GGAAAGTTCCGATGTGTCCGTCCGACTCGAAAAAATCCACAAAACGGTAT
ACCGAGGGGTTTTCCGAAGGTATATAAAGGAGAAGTCCGCGAAAGAAAAC
CAAAGCGGAACAAGCCTGACGGTATACCGACTCCTATCTCCCCGGTATAC
CGTATTATGTCGAATACAAGTCCAAGCGTGCCCGTCCGACTCGAAAAAAG
GCCGTAACAGGTTCAGCATTCCCACTGGTCATAGTTTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12385:275..915+

>mRNA_M-pyrifera_M_contig12385.4881.1 ID=mRNA_M-pyrifera_M_contig12385.4881.1|Name=mRNA_M-pyrifera_M_contig12385.4881.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig12385:275..915+ (Macrocystis pyrifera P11B4 male)
ATGCAACAACCCAGCCGGACACACGTATGCGGAAACGTGAATAAATTGGG
TTCGCCACATTTCTTCGACGTATTCAAGTATATATTCCCCGATTTACTGG
GGTTCATTGCGGCGGAAAGTTCCGATGTGTCCGTCCGACTCGAAAAAATC
CACAAAACGGTATACCGAGGGGTTTTCCGAAGGTATATAAAGGAGAAGTC
CGCGAAAGAAAACCAAAGCGGAACAAGCCTGACGGTATACCGACTCCTAT
CTCCCCGGTATACCGTATTATGTCGAATACAAGTCCAAGCGTGCCCGTCC
GACTCGAAAAAAGGCCGTAACAGGTTCAGCATTCCCACTGGTCATAGTTT
TTAGATGCAACAACCCAGCCGGACACACGTATGCGGAAACGTGAATAAAT
TGGGTTCGCCACATTTCTTCGACGTATTCAAGTATATATTCCCCGATTTA
CTGGGGTTCATTGCGGCGGAAAGTTCCGATGTGTCCGTCCGACTCGAAAA
AATCCACAAAACGGTATACCGAGGGGTTTTCCGAAGGTATATAAAGGAGA
AGTCCGCGAAAGAAAACCAAAGCGGAACAAGCCTGACGGTATACCGACTC
CTATCTCCCCGGTATACCGTATTATGTCGAATACAAGTCCAAGCGTGCCC
GTCCGACTCGAAAAAAGGCCGTAACAGGTTCAGCATTCCCACTGGTCATA
GTTTTTAG
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