mRNA_M-pyrifera_M_contig123843.4880.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123843.4880.1
Unique NamemRNA_M-pyrifera_M_contig123843.4880.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: A0A518FNS0_9PLAN (1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase n=15 Tax=Planctomycetaceae TaxID=126 RepID=A0A518FNS0_9PLAN)

HSP 1 Score: 311 bits (797), Expect = 4.200e-106
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
Query:    1 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVCP 450
            ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVCP
Sbjct:   94 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVCP 243          
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: A0A517W1H8_9PLAN (1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W1H8_9PLAN)

HSP 1 Score: 290 bits (742), Expect = 9.940e-98
Identity = 136/150 (90.67%), Postives = 146/150 (97.33%), Query Frame = 1
Query:    1 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVCP 450
            ALATLFRKYRP+VVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFS TEPHTI+KQVWYPLGFGSLNYPEGSG FVVDISET+ QKL+SIRAYQSQFPPEK+R++RLVESQN L+GTSAGFEAGELFIC+TTLGVRDLVQT+CP
Sbjct:   94 ALATLFRKYRPQVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSETEPHTIKKQVWYPLGFGSLNYPEGSGHFVVDISETLQQKLDSIRAYQSQFPPEKERIFRLVESQNTLLGTSAGFEAGELFICSTTLGVRDLVQTICP 243          
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: A0A517ZJ58_9PLAN (Mycothiol S-conjugate amidase n=2 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZJ58_9PLAN)

HSP 1 Score: 236 bits (601), Expect = 2.960e-76
Identity = 108/150 (72.00%), Postives = 130/150 (86.67%), Query Frame = 1
Query:    1 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVCP 450
            ALA +FR+YRP+VVLGLAGKTP+ASPDHWQAMQITDAA+FYSRLTKW+  F H   H+I KQ+WYPLG  +L +PE SG FVVDISET++ KL++IRAY++QFPPEK RV+RLVESQN+  G SAGFEAGE+ +CATTLGVRDL++TV P
Sbjct:   94 ALAKVFRRYRPRVVLGLAGKTPLASPDHWQAMQITDAAIFYSRLTKWDADFDHLPVHSISKQLWYPLGLSTLQFPESSGHFVVDISETIELKLKAIRAYRTQFPPEKDRVFRLVESQNQFYGASAGFEAGEMLLCATTLGVRDLLKTVLP 243          
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: A0A2E7D2I8_9PLAN (LmbE family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D2I8_9PLAN)

HSP 1 Score: 233 bits (594), Expect = 3.220e-75
Identity = 109/149 (73.15%), Postives = 129/149 (86.58%), Query Frame = 1
Query:    1 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVC 447
            ALA LFR+YRPK+VLG+A KTPMASPDHWQAMQITDA VFYSRL KW+E F +   H I+KQ+WYPLGF +L  P GSGQFVVDIS+T++ KLE++RAY++QFPP K+RV+RLVES  RL+GTS GFEAGELFI ATTLGV+DLV+TVC
Sbjct:   94 ALAKLFRRYRPKIVLGIADKTPMASPDHWQAMQITDAGVFYSRLCKWDESFDNLPVHRIEKQIWYPLGFSTLEIPTGSGQFVVDISDTIELKLEAVRAYKTQFPPAKQRVFRLVESHARLLGTSTGFEAGELFIVATTLGVQDLVKTVC 242          
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: A0A3D3RDD1_9PLAN (LmbE family protein (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3RDD1_9PLAN)

HSP 1 Score: 231 bits (590), Expect = 4.920e-75
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 1
Query:    1 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRL 360
            ALA LFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWN+ F +TEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDIS+T +QK+ESIRAYQSQFPPEKKRVYRL ESQNRL
Sbjct:   94 ALANLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNDQFDNTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISDTFEQKIESIRAYQSQFPPEKKRVYRLGESQNRL 213          
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: A0A1P8WRJ4_9PLAN (Bacillithiol biosynthesis deacetylase n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WRJ4_9PLAN)

HSP 1 Score: 231 bits (589), Expect = 2.550e-74
Identity = 104/149 (69.80%), Postives = 131/149 (87.92%), Query Frame = 1
Query:    1 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVC 447
            ALA +FR+YRP++V+G+A KTPMASPDHWQAMQITDAA+FYSRLTKW+EHF +   H I+KQ+WYPLG  +L+ PEG G+FV DISET+D KLESIRAY++QFPPEK+RV++LVESQNRL+GT+AGF AGE+ I ATTLG+R++  T+C
Sbjct:   98 ALAKVFRRYRPRLVMGIAEKTPMASPDHWQAMQITDAAIFYSRLTKWDEHFENLPVHRIEKQIWYPLGLQNLSLPEGGGRFVSDISETLDVKLESIRAYRTQFPPEKQRVFQLVESQNRLLGTTAGFSAGEMLISATTLGIRNVFDTIC 246          
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: UPI00141DC3B4 (PIG-L family deacetylase n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141DC3B4)

HSP 1 Score: 228 bits (581), Expect = 4.740e-73
Identity = 107/149 (71.81%), Postives = 127/149 (85.23%), Query Frame = 1
Query:    4 LATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVCP 450
            LA +FR+YRPK+V+G+A KTPMASPDHWQAMQITDAAVFYSRLTKW+EHF     HTI K +WYPLGF SL   EGSGQFV+DISET+D KLES+RAY++QFPPEK+RV+R+VES+   +GT+AGF AGELFI +T LGV DLVQT+ P
Sbjct:  100 LAKVFRRYRPKIVMGIAEKTPMASPDHWQAMQITDAAVFYSRLTKWDEHFDGLPVHTIPKMIWYPLGFHSLERTEGSGQFVMDISETLDLKLESVRAYRTQFPPEKERVFRMVESRAHHLGTTAGFVAGELFITSTALGVHDLVQTLLP 248          
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: A0A3B1DRZ2_9ZZZZ (N-acetyl hydrolase n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DRZ2_9ZZZZ)

HSP 1 Score: 222 bits (565), Expect = 8.700e-71
Identity = 105/148 (70.95%), Postives = 121/148 (81.76%), Query Frame = 1
Query:    1 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTV 444
            ALA +FR YRPK+VLG+A KTPMASPDHWQAMQITDAA+FYSRLTKW + F     H + KQVWYPLGF +L  P GS  FVVDISET++ KL++IRAYQ+QFPP K+RV++LVESQNR  G SAGF AGELFI ATTLG RD VQT+
Sbjct:   94 ALAKVFRTYRPKIVLGIADKTPMASPDHWQAMQITDAAIFYSRLTKWQDQFDDLPVHRVTKQVWYPLGFQTLQNPSGSAHFVVDISETLELKLKAIRAYQTQFPPGKERVFQLVESQNRAFGLSAGFAAGELFIAATTLGTRDFVQTI 241          
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: A0A7W0MA59_9PLAN (PIG-L family deacetylase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0MA59_9PLAN)

HSP 1 Score: 220 bits (561), Expect = 3.630e-70
Identity = 103/150 (68.67%), Postives = 124/150 (82.67%), Query Frame = 1
Query:    1 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVCP 450
            ALA +FR++RP VVLG+A KTP+ASPDHWQAMQITDAAVFYSRLTKW++ F H   H+I++ VWYPLGF SL++PEG G FVVD+S+T   KLE+IRAY++QFP  K+RVYRLVE QN   G+SAGF  GELF+ ATTLGV DLV+TV P
Sbjct:   95 ALAKVFRRHRPSVVLGIAAKTPLASPDHWQAMQITDAAVFYSRLTKWDDQFDHLPVHSIRRLVWYPLGFQSLSFPEGGGYFVVDVSDTFAIKLEAIRAYKTQFPQSKERVYRLVEGQNTFYGSSAGFTHGELFVTATTLGVEDLVKTVMP 244          
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Match: UPI0019931788 (PIG-L family deacetylase n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019931788)

HSP 1 Score: 219 bits (558), Expect = 9.430e-70
Identity = 103/150 (68.67%), Postives = 124/150 (82.67%), Query Frame = 1
Query:    1 ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEHFSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQSQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVCP 450
            ALA +FR +RP++V+G+A KTPMASPDHWQAMQITDAAVFYSRLTKW++ F+    HTIQKQ+WYPLG  +L+   G G+FVVDIS T+  KLE+IRAYQ+QFPP K+RV+  VESQ+RL G SAGFEAGEL I AT LG+ DLVQT+CP
Sbjct:   94 ALARVFRLWRPRIVMGIADKTPMASPDHWQAMQITDAAVFYSRLTKWDDEFAGLPAHTIQKQLWYPLGLSNLDVSAGGGRFVVDISSTLPIKLEAIRAYQTQFPPSKQRVFGWVESQSRLYGQSAGFEAGELLIAATMLGINDLVQTLCP 243          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123843.4880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518FNS0_9PLAN4.200e-106100.001D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucop... [more]
A0A517W1H8_9PLAN9.940e-9890.671D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucop... [more]
A0A517ZJ58_9PLAN2.960e-7672.00Mycothiol S-conjugate amidase n=2 Tax=Symmachiella... [more]
A0A2E7D2I8_9PLAN3.220e-7573.15LmbE family protein n=1 Tax=Planctomycetaceae bact... [more]
A0A3D3RDD1_9PLAN4.920e-7591.67LmbE family protein (Fragment) n=1 Tax=Gimesia mar... [more]
A0A1P8WRJ4_9PLAN2.550e-7469.80Bacillithiol biosynthesis deacetylase n=1 Tax=Fuer... [more]
UPI00141DC3B44.740e-7371.81PIG-L family deacetylase n=1 Tax=Rubinisphaera sp.... [more]
A0A3B1DRZ2_9ZZZZ8.700e-7170.95N-acetyl hydrolase n=1 Tax=hydrothermal vent metag... [more]
A0A7W0MA59_9PLAN3.630e-7068.67PIG-L family deacetylase n=1 Tax=Planctomycetaceae... [more]
UPI00199317889.430e-7068.67PIG-L family deacetylase n=1 Tax=Candidatus Saccha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123843contigM-pyrifera_M_contig123843:68..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score293.9
Seed ortholog evalue4.3e-77
Seed eggNOG ortholog344747.PM8797T_18144
Preferred namebshB1
KEGG koko:K01463
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.PFAM LmbE family protein
EggNOG OGs2IY68@203682,COG2120@1,COG2120@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.0075395-CDS-M-pyrifera_M_contig123843:67..5201622815757.0075395-CDS-M-pyrifera_M_contig123843:67..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123843 68..520 -
1692277554.9740613-CDS-M-pyrifera_M_contig123843:67..5201692277554.9740613-CDS-M-pyrifera_M_contig123843:67..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123843 68..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123843.4880.1prot_M-pyrifera_M_contig123843.4880.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123843 68..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123843.4880.1

>prot_M-pyrifera_M_contig123843.4880.1 ID=prot_M-pyrifera_M_contig123843.4880.1|Name=mRNA_M-pyrifera_M_contig123843.4880.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
ALATLFRKYRPKVVLGLAGKTPMASPDHWQAMQITDAAVFYSRLTKWNEH
FSHTEPHTIQKQVWYPLGFGSLNYPEGSGQFVVDISETMDQKLESIRAYQ
SQFPPEKKRVYRLVESQNRLVGTSAGFEAGELFICATTLGVRDLVQTVCP
*
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mRNA from alignment at M-pyrifera_M_contig123843:68..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123843.4880.1 ID=mRNA_M-pyrifera_M_contig123843.4880.1|Name=mRNA_M-pyrifera_M_contig123843.4880.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig123843:68..520- (Macrocystis pyrifera P11B4 male)
GCGCTGGCAACGCTGTTTCGCAAATACCGTCCCAAAGTCGTTCTGGGCCT GGCAGGTAAAACCCCCATGGCCTCCCCTGATCACTGGCAGGCGATGCAAA TCACGGACGCTGCAGTGTTCTATTCGCGTCTGACAAAATGGAATGAGCAC TTCAGCCACACGGAGCCGCATACCATTCAGAAGCAGGTCTGGTACCCCCT TGGTTTCGGCTCACTGAATTACCCGGAAGGCAGCGGGCAGTTCGTGGTCG ATATTTCCGAGACCATGGACCAGAAGCTGGAATCGATTCGCGCCTATCAG TCGCAGTTTCCCCCAGAAAAGAAACGTGTCTACCGCCTGGTCGAGAGCCA GAACAGGCTGGTCGGCACCAGTGCCGGTTTTGAAGCAGGTGAACTCTTCA TCTGTGCCACGACCCTGGGGGTCCGGGATCTGGTGCAAACGGTCTGCCCC TGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123843:68..520-

>mRNA_M-pyrifera_M_contig123843.4880.1 ID=mRNA_M-pyrifera_M_contig123843.4880.1|Name=mRNA_M-pyrifera_M_contig123843.4880.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig123843:68..520- (Macrocystis pyrifera P11B4 male)
GCGCTGGCAACGCTGTTTCGCAAATACCGTCCCAAAGTCGTTCTGGGCCT
GGCAGGTAAAACCCCCATGGCCTCCCCTGATCACTGGCAGGCGATGCAAA
TCACGGACGCTGCAGTGTTCTATTCGCGTCTGACAAAATGGAATGAGCAC
TTCAGCCACACGGAGCCGCATACCATTCAGAAGCAGGTCTGGTACCCCCT
TGGTTTCGGCTCACTGAATTACCCGGAAGGCAGCGGGCAGTTCGTGGTCG
ATATTTCCGAGACCATGGACCAGAAGCTGGAATCGATTCGCGCCTATCAG
TCGCAGTTTCCCCCAGAAAAGAAACGTGTCTACCGCCTGGTCGAGAGCCA
GAACAGGCTGGTCGGCACCAGTGCCGGTTTTGAAGCAGGTGAACTCTTCA
TCTGTGCCACGACCCTGGGGGTCCGGGATCTGGTGCAAACGGTCTGCCCC
TGAGCGCTGGCAACGCTGTTTCGCAAATACCGTCCCAAAGTCGTTCTGGG
CCTGGCAGGTAAAACCCCCATGGCCTCCCCTGATCACTGGCAGGCGATGC
AAATCACGGACGCTGCAGTGTTCTATTCGCGTCTGACAAAATGGAATGAG
CACTTCAGCCACACGGAGCCGCATACCATTCAGAAGCAGGTCTGGTACCC
CCTTGGTTTCGGCTCACTGAATTACCCGGAAGGCAGCGGGCAGTTCGTGG
TCGATATTTCCGAGACCATGGACCAGAAGCTGGAATCGATTCGCGCCTAT
CAGTCGCAGTTTCCCCCAGAAAAGAAACGTGTCTACCGCCTGGTCGAGAG
CCAGAACAGGCTGGTCGGCACCAGTGCCGGTTTTGAAGCAGGTGAACTCT
TCATCTGTGCCACGACCCTGGGGGTCCGGGATCTGGTGCAAACGGTCTGC
CCCTGA
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