mRNA_M-pyrifera_M_contig12384.4877.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12384.4877.1
Unique NamemRNA_M-pyrifera_M_contig12384.4877.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12384.4877.1 vs. uniprot
Match: D8LF36_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF36_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.020e-36
Identity = 164/242 (67.77%), Postives = 186/242 (76.86%), Query Frame = 3 
Query:  222 ECWEAYHEKTAVKCLHCNGPVAQIPGRFSGKHYRSTDPPGRVHSECWEAYNRAKPPKETXXXXXXXXXXXXXXXXXEFVAMEGGVKLHAECRAAYHAKNTEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRKKEGFSGYFIMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPIDRKLGEAEGEENELKVHMECWEAYEAEIAAEREGT 947
            ECWE YHEK +VKCLHC GPVA +PGRF+GK Y STDPP          Y  +KP  E                   +V +  G+K+H ECR+AYH K+T  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVR+ EGFSG F+M   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+DRKLG+AEGE+NE KVHMEC+EAY+A++A + +G+
Sbjct:   48 ECWEKYHEKCSVKCLHCEGPVAHLPGRFNGKFYPSTDPPXXXXXXXXXXYKGSKPAAEKCGECGEPLSFVEGKFSGSYVTLGDGIKVHVECRSAYHQKHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVRRMEGFSGDFMMIDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDRKLGDAEGEDNESKVHMECFEAYQAQLAEKGKGS 289
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BLAST of mRNA_M-pyrifera_M_contig12384.4877.1 vs. uniprot
Match: A0A835YPW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.130e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 3 
Query:  222 ECWEAYHEKTAVKCLHCNGPVAQIPGRFSGKHY 320
            ECWE Y ++ A KC+HC GPVAQIPGR+SGK +
Sbjct:   47 ECWEVYQDRNAEKCMHCKGPVAQIPGRYSGKFF 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12384.4877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF36_ECTSI2.020e-3667.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPW2_9STRA1.130e-766.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12384contigM-pyrifera_M_contig12384:474..3321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog2880.D8LF36
Hectar predicted targeting categoryother localisation
EggNOG OGs2EZ5B@1,2T0IG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size953
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12384.4877.1prot_M-pyrifera_M_contig12384.4877.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12384 1711..3321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.8178906-UTR-M-pyrifera_M_contig12384:473..8251622815756.8178906-UTR-M-pyrifera_M_contig12384:473..825Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12384 474..825 +
1692277554.8671315-UTR-M-pyrifera_M_contig12384:473..8251692277554.8671315-UTR-M-pyrifera_M_contig12384:473..825Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12384 474..825 +
1622815756.8342311-UTR-M-pyrifera_M_contig12384:1601..17101622815756.8342311-UTR-M-pyrifera_M_contig12384:1601..1710Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12384 1602..1710 +
1692277554.8842173-UTR-M-pyrifera_M_contig12384:1601..17101692277554.8842173-UTR-M-pyrifera_M_contig12384:1601..1710Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12384 1602..1710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.8494444-CDS-M-pyrifera_M_contig12384:1710..17351622815756.8494444-CDS-M-pyrifera_M_contig12384:1710..1735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12384 1711..1735 +
1692277554.8943634-CDS-M-pyrifera_M_contig12384:1710..17351692277554.8943634-CDS-M-pyrifera_M_contig12384:1710..1735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12384 1711..1735 +
1622815756.8601103-CDS-M-pyrifera_M_contig12384:2064..23181622815756.8601103-CDS-M-pyrifera_M_contig12384:2064..2318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12384 2065..2318 +
1692277554.9041214-CDS-M-pyrifera_M_contig12384:2064..23181692277554.9041214-CDS-M-pyrifera_M_contig12384:2064..2318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12384 2065..2318 +
1622815756.8704128-CDS-M-pyrifera_M_contig12384:3108..33211622815756.8704128-CDS-M-pyrifera_M_contig12384:3108..3321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12384 3109..3321 +
1692277554.9132516-CDS-M-pyrifera_M_contig12384:3108..33211692277554.9132516-CDS-M-pyrifera_M_contig12384:3108..3321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12384 3109..3321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12384.4877.1

>prot_M-pyrifera_M_contig12384.4877.1 ID=prot_M-pyrifera_M_contig12384.4877.1|Name=mRNA_M-pyrifera_M_contig12384.4877.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
MEGGVKLHAECRAAYHAKNTEKCLQCSEPVAPEKDKFTGEYIELEDKGRV
HAECFDEYSEATAEKCLVCKEAVRKKEGFSGYFIMFDHGKVHKECSSEYQ
EMIADKCLHCNKGVRKAGDFSGSFYPIDRKLGEAEGEENELKVHMECWEA
YEAEIAAEREGTA*
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mRNA from alignment at M-pyrifera_M_contig12384:474..3321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12384.4877.1 ID=mRNA_M-pyrifera_M_contig12384.4877.1|Name=mRNA_M-pyrifera_M_contig12384.4877.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2848bp|location=Sequence derived from alignment at M-pyrifera_M_contig12384:474..3321+ (Macrocystis pyrifera P11B4 male)
TACACACAGAGCGAACGCGCCCACCAGGCGCGAACTGACTCTCCCGCGAG
AATCTCCAACATGCTAAAATATTATTAAAAGGTGCCCCGCCCCCTTTGCC
GTGCTCTCGTGACTTGGTATGTGCCTTTTCCTTTTGTTTACGACCATTTC
ACTTTCCGTCTTCCGGCCGAACAACTTCGGACACGTAACCCGGGGGCAAT
CTGATGTTCGGGCGGATCTAGGAGTGCTGGGAAGCGTACCACGAGAAGAC
GGCGGTGAAGTGCCTGCACTGCAACGGGCCAGTGGCGCAGATCCCGGGCC
GCTTCAGCGGGAAGCACTACAGGAGCACCGACCCTCCGGGGCGCGTGCAC
AGGTGAGCCCGTTTCGTCAACGGCGCCGTTGACAGATATCACGCACTGCT
TTTTAATGTAGCTGAAACTATATACCTACTTTGCACGAATCTGTTTGGGT
TTTTGTGAAAACAGTATATTGCTACGTGCCGTATATACATGCTTCGAGTA
CGAATACGTATGTAATTACGGTATATTCAGTATACGAGCATTCCATACTG
TACCTGGACTACTTAACATTAACATCAACTGCTGTGCCAGGTATATCAAG
CCGCACGAGCCCGAGTGATGGATCGCACCGTGCAAGTGCAAACACGGGGC
GTTGTGGTTCATACCGGGTGTTAGAGTCAGCGAGAACGGCGCCGCAAACC
GCATGGGTCCGTTTTGCCCAACGGTTCGCCGTCCTCCACAGAGCCCCAAA
GCAGAGATATACTCGTACGAAACTAACTGTTGCGATTGGTGCTACACTGC
TTGCCGTTTGGGCGTGTTCCCTCGGGCGGGTATGTGGTAGAACGCTGTTA
TTGCTTGGTCCAGATGGAACCCTATCGTGAACATCAACACTGTTGATGGG
GGGGCGGACTGCGTGCCGACACTAACCCGGCAGCTGCCAGTGCTCAGCTG
CACATGCAGGGTTCAGCAGCTTTTCATACGATAGTGGATCTTTTTTTCTG
TTCGTATGCAAACTGTCTTTTCATTTTTTCGGTTCAGCTTCACCGACCAT
GCGTGCATTTTCCAAGCTTTGCTGAGCCCTCGTGCCCCTGTCCTTCGTAC
TCGCACGTTTTTGTTATTTGAACTGCAGTGAGTGCTGGGAGGCGTACAAC
AGGGCTAAGCCTCCAAAGGAAACATGCACTCACTGCAAAGAACCGCTCGA
AGCTGTGGACGGCAAATTCAGCGGGGAATTCGTTGCAATGGAAGGCGGGG
TCAAGCTGCACGGTGCGTCGATTGGCCGTTCAGTTTTCCTACGGGCCTGC
CCGTAGGAGGCGTGTAAGGCAGTATAATTGTTGTGCTACAGGAATCGATC
GCGTCCGGTCTGCGTACAGACGAGGTTCAACCACGTCTAGTACGGCGGTG
ACCACTGGAGTTTGTTTGCTTCGTAGCCTGCAGTCATTTTACGGATATAA
CTATTAATAAGACATACTCTCAAATGTTAATGTTATCTATCTAAGTAGCC
ACATATACCAGGTATAGCACATAGATGACCGTATGCATCCAAACAACGCC
CCTCGACCCAATAACTAACATGCGTGTTCGTGTTCTCGTAGCCGAGTGCC
GGGCAGCGTACCACGCCAAGAACACGGAGAAATGCTTGCAGTGCTCCGAG
CCCGTCGCGCCGGAGAAGGACAAGTTTACGGGGGAGTATATTGAGTTGGA
GGACAAGGGCCGAGTACACGCTGAGTGCTTCGACGAGTACTCGGAAGCAA
CCGCAGAAAAGTGTCTGGTCTGCAAGGAGGCCGTTAGAAAGAAGGAGGGC
TTCAGCGGGTACTTCATCATGTTCGACCACGGTAAAGTGCACAAGGTGGG
CGATTGCATGCGCGGGTGGGCTCGCGCGAAATCACAAAAATGGGCATAGG
GCCGCTCCCGGAATACGAATCGCTGTCTCCTGAGAACACATCGTCGTCTC
CTTGTTTGTGCCGTCATCAGCAGACGCTATTAATAACAGCCTCAGCAGCA
TACATGCTGTAGAGCAGAACCAACGATGTGCGTTGCTCTGCTGTTCCTTG
GAGTAGGTATTACCTTAATACGAGCGTGTATGGCAATCGGGATGTAAGGG
TTACGGTTGGAGCTACACATAGGTTGGGAACTGCAAATCCGAACAGAATT
AAGTGACAACCAACCTTATTTTGGTTGTATTTGACCCCCCCTGTCTACGC
CTCGGAAATAGGGGTGTGTGTGTGCTTTCGGAGACGTTTTTTTATCGGGT
ACCCTTGAGACATCTGAGGCACATACATATGGATACATCACCTGACTAAA
ATACCGGCCTCAACAGTACACTAATATCGTATACTGTACGTAGCACGCCC
CCGATGCTCTATTTTTTTCTACTTTGGATTTGACGCGGGCAACTGCGCAG
CGGGAACGAAGAGGCACGCAAACTCACAGTGTAGGGGAACCAAACGCGGT
GGGCTTTGTACACAATCAAAATATCCAGCCGGCTCTTAAGGCATACCAGG
TACTGGTGCGGTACTATCAGTGGAGGGTGGTCGTTCCCCTTCAACGGGTA
AGAGCCGGCCAATCATCAACACGGGGAGAAAATGCCGGGGATTAGATGAA
CCTGACAATGTGTTGCGGTTTCTTGTTGGCCGCAGGAGTGCTCTTCGGAG
TATCAGGAGATGATAGCAGACAAGTGCTTGCATTGCAACAAGGGGGTGCG
CAAGGCCGGCGACTTCAGTGGCTCCTTCTACCCTATCGACCGAAAGCTGG
GAGAAGCGGAGGGCGAGGAGAACGAACTTAAGGTTCACATGGAATGCTGG
GAAGCCTACGAAGCGGAAATAGCCGCGGAGCGCGAAGGAACGGCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12384:474..3321+

>mRNA_M-pyrifera_M_contig12384.4877.1 ID=mRNA_M-pyrifera_M_contig12384.4877.1|Name=mRNA_M-pyrifera_M_contig12384.4877.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig12384:474..3321+ (Macrocystis pyrifera P11B4 male)
ATGGAAGGCGGGGTCAAGCTGCACGATGGAAGGCGGGGTCAAGCTGCACG
CCGAGTGCCGGGCAGCGTACCACGCCAAGAACACGGAGAAATGCTTGCAG
TGCTCCGAGCCCGTCGCGCCGGAGAAGGACAAGTTTACGGGGGAGTATAT
TGAGTTGGAGGACAAGGGCCGAGTACACGCTGAGTGCTTCGACGAGTACT
CGGAAGCAACCGCAGAAAAGTGTCTGGTCTGCAAGGAGGCCGTTAGAAAG
AAGGAGGGCTTCAGCGGGTACTTCATCATGTTCGACCACGGTAAAGTGCA
CAAGCCGAGTGCCGGGCAGCGTACCACGCCAAGAACACGGAGAAATGCTT
GCAGTGCTCCGAGCCCGTCGCGCCGGAGAAGGACAAGTTTACGGGGGAGT
ATATTGAGTTGGAGGACAAGGGCCGAGTACACGCTGAGTGCTTCGACGAG
TACTCGGAAGCAACCGCAGAAAAGTGTCTGGTCTGCAAGGAGGCCGTTAG
AAAGAAGGAGGGCTTCAGCGGGTACTTCATCATGTTCGACCACGGTAAAG
TGCACAAGGAGTGCTCTTCGGAGTATCAGGAGATGATAGCAGACAAGTGC
TTGCATTGCAACAAGGGGGTGCGCAAGGCCGGCGACTTCAGTGGCTCCTT
CTACCCTATCGACCGAAAGCTGGGAGAAGCGGAGGGCGAGGAGAACGAAC
TTAAGGTTCACATGGAATGCTGGGAAGCCTACGAAGCGGAAATAGCCGCG
GAGCGCGAAGGAACGGCTTGAGAGTGCTCTTCGGAGTATCAGGAGATGAT
AGCAGACAAGTGCTTGCATTGCAACAAGGGGGTGCGCAAGGCCGGCGACT
TCAGTGGCTCCTTCTACCCTATCGACCGAAAGCTGGGAGAAGCGGAGGGC
GAGGAGAACGAACTTAAGGTTCACATGGAATGCTGGGAAGCCTACGAAGC
GGAAATAGCCGCGGAGCGCGAAGGAACGGCTTGA
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