mRNA_M-pyrifera_M_contig123835.4875.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123835.4875.1
Unique NamemRNA_M-pyrifera_M_contig123835.4875.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: R1EMG5_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMG5_EMIHU)

HSP 1 Score: 76.3 bits (186), Expect = 2.090e-14
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   43 FEQRYYEDVSAWGSASHPIFVYIGGEGPLNGLPNGYAAAMARQHNAALLALEARFYGESVP 225
            + QRYYED + WG   HP+F+ +GGEGP+ G P+G    +A  H AAL++LE RFYGES P
Sbjct:   58 WSQRYYEDTTLWGGPGHPVFLSLGGEGPVGGPPSGLQRELAATHRAALISLEHRFYGESRP 118          
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: A0A5D6XK49_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK49_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.930e-13
Identity = 42/86 (48.84%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 ITQPLDHDNADQGE-----------FEQRYYEDVSAWGSASHPIFVYIGGEGPLNGLPNGYAAAMARQHNAALLALEARFYGESVP 225
             TQ +DH  AD GE           F+QRYYE  S W     P+ +YIGGEGPL G P G+   +A +  A +LALE RFYGESVP
Sbjct:   59 FTQRVDHFAAD-GESERLAQATNATFQQRYYEMNSFWRKPDGPVILYIGGEGPLTGTPAGFVHVLAEKFGAKILALEHRFYGESVP 143          
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: UPI0018870D4E (thymus-specific serine protease-like n=1 Tax=Pungitius pungitius TaxID=134920 RepID=UPI0018870D4E)

HSP 1 Score: 69.7 bits (169), Expect = 1.240e-12
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 ITQPLDH-DNADQGEFEQRYYEDVSAWGSASHPIFVYIGGEGPLN--GLPNGYAAAMARQHNAALLALEARFYGESV 222
            I QPLDH D  D G F QR++ + + W     P+F+YIGGEGP++   +  G+   MA +H A LLALE RFYG+S+
Sbjct:   51 IHQPLDHFDRLDLGTFPQRFFVNEAYWRRPDGPVFLYIGGEGPISESSVLAGHHVDMAEEHGALLLALEHRFYGDSI 127          
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: A0A5A8ECT9_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECT9_CAFRO)

HSP 1 Score: 70.9 bits (172), Expect = 1.680e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 TQPLDHDNADQGEFEQRYYEDVSAWGSASHPIFVYIGGEGPLNGLPNGYAAAMARQHNAALLALEARFYGESVP 225
            T PLD+++ + G+F+QRY+ +   W  AS P+F+ +GGEGP +  P+G+   +A+    A+  LE RFYGES+P
Sbjct:   54 TTPLDYNDVNAGDFQQRYWVNTDHWDQASGPLFLSVGGEGPAHA-PSGWGVELAKTFKGAIATLEHRFYGESLP 126          
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: A0A485LHM8_9STRA (Aste57867_21472 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHM8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.330e-12
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   43 FEQRYYEDVSAWGSA-SHPIFVYIGGEGPLNGLPNGYAAAMARQHNAALLALEARFYGESVP 225
            F+QR+Y D   WG+  S+PI +YIGGEG +N +P G+   +A++H A ++ALE R+YGESVP
Sbjct:   67 FQQRFYVDDRFWGNHDSNPIILYIGGEGAMNQMPTGFVDVLAKEHKAKVVALEHRYYGESVP 128          
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: A0A1X0NM45_9TRYP (Serine carboxypeptidase S28 n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NM45_9TRYP)

HSP 1 Score: 69.3 bits (168), Expect = 5.920e-12
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    7 QPLDHDNADQGEFEQRYYEDVSAWGSASHPIFVYIGGEGPLNGLPNGYAAAMARQHNAALLALEARFYGESVP 225
            Q +DH++   G+F QR++ D +AW   + P  +Y+ GEGP +G+PNG     +R   AA+ +LE RFYG+S+P
Sbjct:   89 QAIDHNDPAAGQFRQRWWVDRTAWDDQNGPAILYVNGEGPASGVPNGAVLKYSRAVRAAVFSLEHRFYGDSMP 161          
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: A0A482RHE8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RHE8_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 7.600e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 ITQPLDHDNADQGEFEQRYYEDVSAW-GSASHPIFVYIGGEGPLNGLPNGYAAAMARQHNAALLALEARFYGESVP 225
              Q +DH N ++G F QR+Y D SAW G+A+ P+  YI GE P  G P+G    +A+Q  + ++ALE R+YGES+P
Sbjct:   15 FPQLVDHTNPNRGTFAQRWYWDHSAWDGTANSPVLFYICGEAPCTGSPSGSVINLAQQTKSLIVALEHRWYGESLP 90          
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: UPI000D2FA0C4 (thymus-specific serine protease-like n=1 Tax=Maylandia zebra TaxID=106582 RepID=UPI000D2FA0C4)

HSP 1 Score: 66.2 bits (160), Expect = 9.410e-12
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 ITQPLDHDNADQGE-FEQRYYEDVSAWGSASHPIFVYIGGEGPL--NGLPNGYAAAMARQHNAALLALEARFYGESV 222
            I QPLDH N      F QR++ + + W     P+F+YIGGEGPL    +  G+ + MA +H A LLALE RFYG+S+
Sbjct:   62 IVQPLDHFNQQNSNTFPQRFFVNEAYWQHPDGPVFLYIGGEGPLVEYDVLTGHHSDMAEEHGALLLALEHRFYGDSI 138          
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: A0A669BNX5_ORENI (Uncharacterized protein n=2 Tax=Oreochromis TaxID=8139 RepID=A0A669BNX5_ORENI)

HSP 1 Score: 65.9 bits (159), Expect = 1.160e-11
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 ITQPLDHDNADQGE-FEQRYYEDVSAWGSASHPIFVYIGGEGPL--NGLPNGYAAAMARQHNAALLALEARFYGESV 222
            I QPLDH N      F QR++ + + W     P+F+YIGGEGPL    +  G+ + MA +H A LLALE RFYG+S+
Sbjct:   59 IVQPLDHFNQQNSNTFPQRFFVNEAYWQHHDGPVFLYIGGEGPLVEYDVLTGHHSDMAEEHGALLLALEHRFYGDSI 135          
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Match: A0A8C6M818_NOTFU (Uncharacterized protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6M818_NOTFU)

HSP 1 Score: 65.5 bits (158), Expect = 1.360e-11
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 ITQPLDHDNA-DQGEFEQRYYEDVSAWGSASHPIFVYIGGEGPLNGLPN--GYAAAMARQHNAALLALEARFYGESV 222
            I QPLDH N  D   F QR++ + + W     P+F++IGGEGP++ L    G+ A MA++H A LLA+E RFYG S+
Sbjct:   62 IYQPLDHFNRQDINTFPQRFFVNEAYWQCPDGPVFLFIGGEGPIHELDVLIGHHADMAKEHRALLLAVEHRFYGNSI 138          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123835.4875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R1EMG5_EMIHU2.090e-1454.10Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A5D6XK49_9STRA1.930e-1348.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
UPI0018870D4E1.240e-1248.05thymus-specific serine protease-like n=1 Tax=Pungi... [more]
A0A5A8ECT9_CAFRO1.680e-1243.24Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A485LHM8_9STRA2.330e-1251.61Aste57867_21472 protein n=1 Tax=Aphanomyces stella... [more]
A0A1X0NM45_9TRYP5.920e-1242.47Serine carboxypeptidase S28 n=1 Tax=Trypanosoma th... [more]
A0A482RHE8_9ARCH7.600e-1246.05Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI000D2FA0C49.410e-1246.75thymus-specific serine protease-like n=1 Tax=Mayla... [more]
A0A669BNX5_ORENI1.160e-1146.75Uncharacterized protein n=2 Tax=Oreochromis TaxID=... [more]
A0A8C6M818_NOTFU1.360e-1146.75Uncharacterized protein n=1 Tax=Nothobranchius fur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123835contigM-pyrifera_M_contig123835:111..353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2.6e-12
Seed eggNOG ortholog2903.EOD24161
KEGG koko:K09649
Hectar predicted targeting categoryother localisation
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsKOG2182@1,KOG2182@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.7443097-CDS-M-pyrifera_M_contig123835:110..3531622815756.7443097-CDS-M-pyrifera_M_contig123835:110..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123835 111..353 -
1692277554.8331158-CDS-M-pyrifera_M_contig123835:110..3531692277554.8331158-CDS-M-pyrifera_M_contig123835:110..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123835 111..353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123835.4875.1prot_M-pyrifera_M_contig123835.4875.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123835 111..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123835.4875.1

>prot_M-pyrifera_M_contig123835.4875.1 ID=prot_M-pyrifera_M_contig123835.4875.1|Name=mRNA_M-pyrifera_M_contig123835.4875.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
ITQPLDHDNADQGEFEQRYYEDVSAWGSASHPIFVYIGGEGPLNGLPNGY
AAAMARQHNAALLALEARFYGESVPLEADKS
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mRNA from alignment at M-pyrifera_M_contig123835:111..353-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123835.4875.1 ID=mRNA_M-pyrifera_M_contig123835.4875.1|Name=mRNA_M-pyrifera_M_contig123835.4875.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig123835:111..353- (Macrocystis pyrifera P11B4 male)
ATCACACAACCACTGGACCATGACAATGCAGATCAAGGTGAATTCGAGCA GCGGTACTATGAGGACGTCAGCGCGTGGGGTAGCGCGTCACACCCCATTT TTGTTTACATCGGCGGAGAAGGCCCCCTCAACGGGCTTCCGAATGGGTAC GCCGCAGCGATGGCCAGACAACACAATGCTGCACTGCTTGCTCTTGAAGC ACGCTTCTACGGAGAGTCTGTACCTCTTGAGGCAGACAAGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123835:111..353-

>mRNA_M-pyrifera_M_contig123835.4875.1 ID=mRNA_M-pyrifera_M_contig123835.4875.1|Name=mRNA_M-pyrifera_M_contig123835.4875.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig123835:111..353- (Macrocystis pyrifera P11B4 male)
ATCACACAACCACTGGACCATGACAATGCAGATCAAGGTGAATTCGAGCA
GCGGTACTATGAGGACGTCAGCGCGTGGGGTAGCGCGTCACACCCCATTT
TTGTTTACATCGGCGGAGAAGGCCCCCTCAACGGGCTTCCGAATGGGTAC
GCCGCAGCGATGGCCAGACAACACAATGCTGCACTGCTTGCTCTTGAAGC
ACGCTTCTACGGAGAGTCTGTACCTCTTGAGGCAGACAAGTCCATCACAC
AACCACTGGACCATGACAATGCAGATCAAGGTGAATTCGAGCAGCGGTAC
TATGAGGACGTCAGCGCGTGGGGTAGCGCGTCACACCCCATTTTTGTTTA
CATCGGCGGAGAAGGCCCCCTCAACGGGCTTCCGAATGGGTACGCCGCAG
CGATGGCCAGACAACACAATGCTGCACTGCTTGCTCTTGAAGCACGCTTC
TACGGAGAGTCTGTACCTCTTGAGGCAGACAAGTCC
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