mRNA_M-pyrifera_M_contig123568.4821.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123568.4821.1
Unique NamemRNA_M-pyrifera_M_contig123568.4821.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A7S4I9Q2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I9Q2_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 8.740e-14
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1
Query:    1 LAGLGLRLQRNAGEIKKVYTELCTQSSPFLTLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRAD 297
            +   G RL  N   +  VY     + S   T++HGD+K+SN+F+D R + +   +              SV+ IDWQWVG GI A+DVAYYL TST  D
Sbjct:  303 MESFGARLYNNRKALNSVY-----KHSKLKTIVHGDYKISNIFLDRRTATQTKAKYSH--------HSDSVYVIDWQWVGLGIGAVDVAYYLATSTVLD 388          
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A820LJV0_9BILA (Hypothetical protein n=4 Tax=Rotaria socialis TaxID=392032 RepID=A0A820LJV0_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 1.310e-9
Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 1
Query:   10 LGLRLQRNAGEIKKVYTELCTQSSPFLTLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRADLL 303
            LG  L+    +I  ++  L  +     T+IHGD+K+SN+FID  ++                  ER ++ IDWQW G G AA+DVAY++ TS   + +
Sbjct:   42 LGFLLESRLNDIMLLFNNLQPR-----TIIHGDYKISNIFIDHNST------------------ERQIYAIDWQWCGIGHAAMDVAYFIATSVHENTI 116          
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A819PQX3_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819PQX3_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 4.130e-8
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 1
Query:   91 TLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRADLL 303
            TLIHGDFKV+N+FID+                     E  V+ IDWQW G G  AIDVAY++ TS   +++
Sbjct:   47 TLIHGDFKVTNIFIDNNQI------------------EGQVYAIDWQWFGVGNIAIDVAYFIATSIHENVI 99          
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A819QRW1_9BILA (Hypothetical protein n=3 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A819QRW1_9BILA)

HSP 1 Score: 56.6 bits (135), Expect = 1.830e-7
Identity = 29/69 (42.03%), Postives = 36/69 (52.17%), Query Frame = 1
Query:   91 TLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRAD 297
            TLIHGDFKV+N+ ID                      E  V+ +DWQW G G  AIDVAY++ TS  +D
Sbjct:   79 TLIHGDFKVTNILIDDNEI------------------ESQVYAVDWQWFGVGNIAIDVAYFIATSVLSD 129          
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A5B8MHF0_9CHLO (Inositol monophosphatase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MHF0_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 3.970e-7
Identity = 28/94 (29.79%), Postives = 43/94 (45.74%), Query Frame = 1
Query:   22 LQRNAGEIKKVYTELCTQSSPFLTLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRADLL 303
            L+ +A  + ++    C    P  TLIHGDFK +N+F+         L +                 +D+QWVG G+ A+D+ Y+L TS     L
Sbjct:  271 LRESASSLSRMLARACLPGHPSRTLIHGDFKAANVFVSGNEGGGSSLATA----------------VDYQWVGFGLGAVDLVYFLTTSLEESAL 348          
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A2P6NMM1_9EUKA (Hormonally up-regulated neu tumor-associated kinase-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NMM1_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 4.000e-7
Identity = 33/101 (32.67%), Postives = 46/101 (45.54%), Query Frame = 1
Query:    1 LAGLGLRLQRNAGEIKKVYTELCTQSSPFLTLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRADLL 303
            L  LG RL      + K +  +  +     TL+HGD+K+SNLF+                       E  V+ IDWQW G G  A+DV+Y++ TS    LL
Sbjct:  763 LETLGERLNERLSSLSKQFDRMEPK-----TLVHGDYKISNLFVPP---------------------EGGVYAIDWQWFGMGPGALDVSYFIATSLSPSLL 837          
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A2P6N9S2_9EUKA (DNA repair protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N9S2_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 4.070e-7
Identity = 33/101 (32.67%), Postives = 46/101 (45.54%), Query Frame = 1
Query:    1 LAGLGLRLQRNAGEIKKVYTELCTQSSPFLTLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRADLL 303
            L  LG RL      + K +  +  +     TL+HGD+K+SNLF+                       E  V+ IDWQW G G  A+DV+Y++ TS    LL
Sbjct: 1174 LETLGERLNERLSSLSKQFDRMEPK-----TLVHGDYKISNLFVPP---------------------EGGVYAIDWQWFGMGPGALDVSYFIATSLSPSLL 1248          
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A816XJP9_9BILA (Hypothetical protein n=3 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816XJP9_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 9.990e-7
Identity = 28/71 (39.44%), Postives = 35/71 (49.30%), Query Frame = 1
Query:   91 TLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRADLL 303
            TLIHGDFKV+N+ ID                      E  V+ +DWQW G G  AIDVAY++ TS     +
Sbjct:   66 TLIHGDFKVTNILIDDNEI------------------ESQVYAVDWQWFGVGNIAIDVAYFIATSVNESAI 118          
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A815U7X1_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815U7X1_9BILA)

HSP 1 Score: 53.5 bits (127), Expect = 4.500e-6
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 1
Query:   10 LGLRLQRNAGEIKKVYTELCTQSSPFLTLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTS 285
            LG+RL+    +I  + + L  +     TLIHGDFK++N+FI+            F    T       V+ IDWQW G G  A+DVA+++ TS
Sbjct:  229 LGVRLEHRLDDIALIMSLLEPR-----TLIHGDFKITNIFINHN-------NHDFYAESTTTEH---VYAIDWQWFGIGNVALDVAHFIATS 305          
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Match: A0A7S2SKM8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKM8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.330e-6
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 1
Query:   88 LTLIHGDFKVSNLFIDSRASARLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRADL 300
            LTLIHGDFK++N++      +     +  P P         +  IDWQW G G+ A D+A+ LCTS  + +
Sbjct:  189 LTLIHGDFKLTNIYFLEAVESLEVTDAVVPCPPAGTGSWLRL--IDWQWAGMGVGAADIAHTLCTSLASPI 257          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123568.4821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7S4I9Q2_9EUKA8.740e-1439.39Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A820LJV0_9BILA1.310e-933.67Hypothetical protein n=4 Tax=Rotaria socialis TaxI... [more]
A0A819PQX3_9BILA4.130e-842.25Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
A0A819QRW1_9BILA1.830e-742.03Hypothetical protein n=3 Tax=Rotaria magnacalcarat... [more]
A0A5B8MHF0_9CHLO3.970e-729.79Inositol monophosphatase n=1 Tax=Chloropicon primu... [more]
A0A2P6NMM1_9EUKA4.000e-732.67Hormonally up-regulated neu tumor-associated kinas... [more]
A0A2P6N9S2_9EUKA4.070e-732.67DNA repair protein n=1 Tax=Planoprotostelium fungi... [more]
A0A816XJP9_9BILA9.990e-739.44Hypothetical protein n=3 Tax=Rotaria magnacalcarat... [more]
A0A815U7X1_9BILA4.500e-635.87Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A7S2SKM8_9STRA8.330e-636.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123568contigM-pyrifera_M_contig123568:152..457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.0831027-CDS-M-pyrifera_M_contig123568:151..4571622815754.0831027-CDS-M-pyrifera_M_contig123568:151..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123568 152..457 -
1692277553.6244142-CDS-M-pyrifera_M_contig123568:151..4571692277553.6244142-CDS-M-pyrifera_M_contig123568:151..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123568 152..457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123568.4821.1prot_M-pyrifera_M_contig123568.4821.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123568 152..457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123568.4821.1

>prot_M-pyrifera_M_contig123568.4821.1 ID=prot_M-pyrifera_M_contig123568.4821.1|Name=mRNA_M-pyrifera_M_contig123568.4821.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
LAGLGLRLQRNAGEIKKVYTELCTQSSPFLTLIHGDFKVSNLFIDSRASA
RLPLRSGFPLPKTCDAEERSVWTIDWQWVGRGIAAIDVAYYLCTSTRADL
LA
back to top

mRNA from alignment at M-pyrifera_M_contig123568:152..457-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123568.4821.1 ID=mRNA_M-pyrifera_M_contig123568.4821.1|Name=mRNA_M-pyrifera_M_contig123568.4821.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig123568:152..457- (Macrocystis pyrifera P11B4 male)
CTCGCAGGCCTGGGGCTGCGGCTGCAGAGGAACGCAGGAGAGATCAAGAA GGTCTACACCGAGCTCTGCACACAGTCCTCTCCCTTTCTCACCCTTATTC ATGGCGACTTCAAGGTCAGCAACCTATTCATCGACAGCAGGGCCTCCGCC AGACTCCCCCTCCGCTCTGGCTTCCCTCTGCCCAAGACGTGCGACGCCGA GGAGAGGAGCGTGTGGACCATCGATTGGCAGTGGGTGGGCAGGGGCATCG CAGCCATCGACGTTGCCTACTACCTCTGCACCAGCACCCGCGCCGACCTC CTCGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123568:152..457-

>mRNA_M-pyrifera_M_contig123568.4821.1 ID=mRNA_M-pyrifera_M_contig123568.4821.1|Name=mRNA_M-pyrifera_M_contig123568.4821.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig123568:152..457- (Macrocystis pyrifera P11B4 male)
CTCGCAGGCCTGGGGCTGCGGCTGCAGAGGAACGCAGGAGAGATCAAGAA
GGTCTACACCGAGCTCTGCACACAGTCCTCTCCCTTTCTCACCCTTATTC
ATGGCGACTTCAAGGTCAGCAACCTATTCATCGACAGCAGGGCCTCCGCC
AGACTCCCCCTCCGCTCTGGCTTCCCTCTGCCCAAGACGTGCGACGCCGA
GGAGAGGAGCGTGTGGACCATCGATTGGCAGTGGGTGGGCAGGGGCATCG
CAGCCATCGACGTTGCCTACTACCTCTGCACCAGCACCCGCGCCGACCTC
CTCGCCCTCGCAGGCCTGGGGCTGCGGCTGCAGAGGAACGCAGGAGAGAT
CAAGAAGGTCTACACCGAGCTCTGCACACAGTCCTCTCCCTTTCTCACCC
TTATTCATGGCGACTTCAAGGTCAGCAACCTATTCATCGACAGCAGGGCC
TCCGCCAGACTCCCCCTCCGCTCTGGCTTCCCTCTGCCCAAGACGTGCGA
CGCCGAGGAGAGGAGCGTGTGGACCATCGATTGGCAGTGGGTGGGCAGGG
GCATCGCAGCCATCGACGTTGCCTACTACCTCTGCACCAGCACCCGCGCC
GACCTCCTCGCC
back to top