mRNA_M-pyrifera_M_contig123555.4818.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123555.4818.1
Unique NamemRNA_M-pyrifera_M_contig123555.4818.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123555.4818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123555contigM-pyrifera_M_contig123555:15..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.5
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog28583.AMAG_16871T0
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Major Facilitator Superfamily
EggNOG OGs390P5@33154,3PERQ@4751,COG0477@1,KOG2533@2759
COG Functional cat.G
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.9745321-CDS-M-pyrifera_M_contig123555:14..4731622815753.9745321-CDS-M-pyrifera_M_contig123555:14..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123555 15..473 +
1692277553.5581083-CDS-M-pyrifera_M_contig123555:14..4731692277553.5581083-CDS-M-pyrifera_M_contig123555:14..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123555 15..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123555.4818.1prot_M-pyrifera_M_contig123555.4818.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123555 15..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123555.4818.1

>prot_M-pyrifera_M_contig123555.4818.1 ID=prot_M-pyrifera_M_contig123555.4818.1|Name=mRNA_M-pyrifera_M_contig123555.4818.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
SATPLLLFAGYAGEVAGKVVIGPVTDLYGVRVAFLGAGTLGTALATAAFA
MSRSLPAFAACWFALSVCICGTWAAIVRCAANWVPVSRRGRALSLLSLGY
TVGDVAVRTVLGTALGLGVHWRAVFLMAIVIMGVANVPAFIILRDSPADA
GIE
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mRNA from alignment at M-pyrifera_M_contig123555:15..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123555.4818.1 ID=mRNA_M-pyrifera_M_contig123555.4818.1|Name=mRNA_M-pyrifera_M_contig123555.4818.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig123555:15..473+ (Macrocystis pyrifera P11B4 male)
TCAGCAACGCCACTGCTGCTGTTCGCCGGGTATGCAGGCGAAGTTGCAGG
CAAGGTGGTCATTGGTCCCGTGACCGACTTGTATGGGGTACGCGTAGCCT
TTTTGGGCGCAGGGACGCTGGGCACAGCGCTGGCAACTGCCGCGTTCGCC
ATGTCCAGGTCGCTGCCGGCCTTCGCCGCTTGCTGGTTCGCCCTCTCGGT
CTGCATCTGTGGCACCTGGGCTGCCATCGTTCGCTGCGCTGCCAACTGGG
TCCCCGTTTCGCGCCGCGGCCGAGCGCTGTCTCTTCTATCCCTTGGCTAC
ACCGTGGGCGACGTCGCCGTTCGCACCGTGCTGGGCACGGCGCTGGGGCT
GGGCGTGCACTGGAGAGCAGTCTTCCTCATGGCCATCGTCATCATGGGTG
TTGCGAACGTGCCGGCGTTCATCATCTTGCGCGACTCGCCAGCGGACGCG
GGGATTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123555:15..473+

>mRNA_M-pyrifera_M_contig123555.4818.1 ID=mRNA_M-pyrifera_M_contig123555.4818.1|Name=mRNA_M-pyrifera_M_contig123555.4818.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig123555:15..473+ (Macrocystis pyrifera P11B4 male)
TCAGCAACGCCACTGCTGCTGTTCGCCGGGTATGCAGGCGAAGTTGCAGG
CAAGGTGGTCATTGGTCCCGTGACCGACTTGTATGGGGTACGCGTAGCCT
TTTTGGGCGCAGGGACGCTGGGCACAGCGCTGGCAACTGCCGCGTTCGCC
ATGTCCAGGTCGCTGCCGGCCTTCGCCGCTTGCTGGTTCGCCCTCTCGGT
CTGCATCTGTGGCACCTGGGCTGCCATCGTTCGCTGCGCTGCCAACTGGG
TCCCCGTTTCGCGCCGCGGCCGAGCGCTGTCTCTTCTATCCCTTGGCTAC
ACCGTGGGCGACGTCGCCGTTCGCACCGTGCTGGGCACGGCGCTGGGGCT
GGGCGTGCACTGGAGAGCAGTCTTCCTCATGGCCATCGTCATCATGGGTG
TTGCGAACGTGCCGGCGTTCATCATCTTGCGCGACTCGCCAGCGGACGCG
GGGATTGAGTCAGCAACGCCACTGCTGCTGTTCGCCGGGTATGCAGGCGA
AGTTGCAGGCAAGGTGGTCATTGGTCCCGTGACCGACTTGTATGGGGTAC
GCGTAGCCTTTTTGGGCGCAGGGACGCTGGGCACAGCGCTGGCAACTGCC
GCGTTCGCCATGTCCAGGTCGCTGCCGGCCTTCGCCGCTTGCTGGTTCGC
CCTCTCGGTCTGCATCTGTGGCACCTGGGCTGCCATCGTTCGCTGCGCTG
CCAACTGGGTCCCCGTTTCGCGCCGCGGCCGAGCGCTGTCTCTTCTATCC
CTTGGCTACACCGTGGGCGACGTCGCCGTTCGCACCGTGCTGGGCACGGC
GCTGGGGCTGGGCGTGCACTGGAGAGCAGTCTTCCTCATGGCCATCGTCA
TCATGGGTGTTGCGAACGTGCCGGCGTTCATCATCTTGCGCGACTCGCCA
GCGGACGCGGGGATTGAG
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