mRNA_M-pyrifera_M_contig123541.4813.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123541.4813.1
Unique NamemRNA_M-pyrifera_M_contig123541.4813.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: A0A2E0J4Y6_9GAMM (Lactamase_B domain-containing protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E0J4Y6_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 8.090e-21
Identity = 59/147 (40.14%), Postives = 79/147 (53.74%), Query Frame = 1
Query:    7 GEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALLPGEALPPIYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWDLEADGPAEGRPARLRLDETLEVACVRTVHSELCHGLLVWA 447
            G+ SS+A L+VDG P LL+DAG GV RA +A   G     + +THNHSDHA ELPV++A E A+             RPR++  A +   L   RLHEL S+       AD         + L +TL +  +R  HSE C+G +V A
Sbjct:   25 GDASSSAALVVDGEPLLLVDAGFGVVRACKAAF-GAVPRTLLITHNHSDHAAELPVILAAECAR-----------DRRPRVIAAADVATTLRAHRLHELHSTGASPSAFADWQDVAPDTPIALTDTLSLRLLRARHSEPCYGFIVEA 159          
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: A0A423PFN6_9GAMM (Lactamase_B domain-containing protein n=2 Tax=Salinisphaera TaxID=180541 RepID=A0A423PFN6_9GAMM)

HSP 1 Score: 89.7 bits (221), Expect = 3.980e-19
Identity = 64/151 (42.38%), Postives = 80/151 (52.98%), Query Frame = 1
Query:    7 GEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALLPGEALPPIYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWD-----LEADGPAEGRPARLRLDETLEVACVRTVHSELCHGLLVW 444
            GEPSSA  LL DGRP LL+D G GV RA R  L G     I VTHNHSDHA ELPV+  + LA   G+R         PR++    +  RL   RLHELRS+ +        + ADGP       + L + L +  +R  HSE   G ++W
Sbjct:   20 GEPSSAVALLFDGRPVLLVDVGFGVVRACRHWL-GTVPDTILVTHNHSDHAAELPVV--LPLAAAAGRR---------PRVIAAPAVVERLQRHRLHELRSTGRPLADFCELVAADGP-------VTLADGLTITLLRARHSEPSCGFMLW 151          
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: UPI000C03EB34 (uncharacterized protein LOC111339252 isoform X1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03EB34)

HSP 1 Score: 88.6 bits (218), Expect = 1.290e-17
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 IRGEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALLPGEALPP-IYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWDLEADGPA---EGRPARLRLDETLEVACVRTVHSELCHGLLVW 444
            + G+PSS+A++   G+P L++D G GV +A R  L     P  +++THNH DHAGELP+L A E  +R+  R       PR R+L   ++Q +L   RL E+ S     +  AD  A    G P  L  D+   +   RT+HSE+C+G +++
Sbjct:  545 LHGQPSSSAIVFHRGKPLLMVDVGAGVVKACRERLAYNEFPRNVFITHNHLDHAGELPLLFAFESMRRYLAR------EPRLRVLSGPEVQHKLKIHRLDEMLSLYTP-EQAADWLACEQNGGPTYLDDDKQFSIKTYRTLHSEICYGFVLY 689          
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: A0A2B4RPB5_STYPI (Serine/threonine-protein kinase Nek6 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RPB5_STYPI)

HSP 1 Score: 88.6 bits (218), Expect = 1.340e-17
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 IRGEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALLPGEALPP-IYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWDLEADGPA---EGRPARLRLDETLEVACVRTVHSELCHGLLVW 444
            + G+PSS+A++   G+P L++D G GV +A R  L     P  +++THNH DHAGELP+L A E  +R+  R       PR R+L   ++Q +L   RL E+ S     +  AD  A    G P  L  D+   +   RT+HSE+C+G +++
Sbjct:  817 LHGQPSSSAIVFHRGKPLLMVDVGAGVVKACRERLAYNEFPRNVFITHNHLDHAGELPLLFAFESMRRYLAR------EPRLRVLSGPEVQHKLKIHRLDEMLSLYTP-EQAADWLACEQNGGPTYLDDDKQFSIKTYRTLHSEICYGFVLY 961          
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: UPI000F5590C2 (uncharacterized protein LOC113678861 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5590C2)

HSP 1 Score: 85.9 bits (211), Expect = 1.160e-16
Identity = 55/152 (36.18%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 IRGEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALLPGEALPP-IYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWDLEADGPA---EGRPARLRLDETLEVACVRTVHSELCHGLLVW 444
            + G+PSS+A++   G+P L+ D G GV +A R  L     P  +++THNH DHAGELP+L   E  +R+   L G    PR R+L   ++Q +L   RL E+ S      + AD  A   +G P  L  D+   +   +T+HSE+C+G +++
Sbjct:  770 LHGQPSSSAIVFHKGKPLLMADVGAGVVKACRERLAYNEFPRNVFITHNHLDHAGELPLLFVFESKRRY---LAG---EPRLRVLSGPEVQQKLKTHRLDEMLSLYTPEQV-ADWLACEQDGSPTYLDDDKQFFIKTYKTLHSEICYGFVLY 914          
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: A0A3M6UKT8_POCDA (Protein kinase domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UKT8_POCDA)

HSP 1 Score: 85.9 bits (211), Expect = 1.210e-16
Identity = 55/152 (36.18%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 IRGEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALLPGEALPP-IYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWDLEADGPA---EGRPARLRLDETLEVACVRTVHSELCHGLLVW 444
            + G+PSS+A++   G+P L+ D G GV +A R  L     P  +++THNH DHAGELP+L   E  +R+   L G    PR R+L   ++Q +L   RL E+ S      + AD  A   +G P  L  D+   +   +T+HSE+C+G +++
Sbjct:  753 LHGQPSSSAIVFHKGKPLLMADVGAGVVKACRERLAYNEFPRNVFITHNHLDHAGELPLLFVFESKRRY---LAG---EPRLRVLSGPEVQQKLKTHRLDEMLSLYTPEQV-ADWLACEQDGSPTYLDDDKQFFIKTYKTLHSEICYGFVLY 897          
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: UPI001CF56F0B (uncharacterized protein LOC114963820 isoform X1 n=4 Tax=Acropora TaxID=6127 RepID=UPI001CF56F0B)

HSP 1 Score: 85.1 bits (209), Expect = 2.210e-16
Identity = 53/153 (34.64%), Postives = 86/153 (56.21%), Query Frame = 1
Query:    1 IRGEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALL--PGEALPP-IYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWDLEADG---PAEGRPARLRLDETLEVACVRTVHSELCHGLLV 441
            + G+PSS+ ++  DG+P LL D G GV +     L  P  A P  ++++HNH DH+GELP+L+A E  +R+  +       P  R+LC  +++ +L   RL EL S++   +  A+      +G PA L   +   +   RT+HSE+C+G L+
Sbjct: 1131 VHGKPSSSVIIYHDGKPLLLADIGAGVLKPCMEKLGHPHGAFPRNVFISHNHMDHSGELPLLLAFESMRRYKAK------EPALRVLCGPEVEHKLKTHRLDELLSTSYTPEQVAEWIVCKPDGDPAYLDDAKHFFIKIYRTLHSEVCYGFLL 1277          
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: UPI000779FF06 (tyrosine-protein kinase Fer-like isoform X3 n=2 Tax=Acropora digitifera TaxID=70779 RepID=UPI000779FF06)

HSP 1 Score: 80.9 bits (198), Expect = 6.520e-15
Identity = 50/153 (32.68%), Postives = 84/153 (54.90%), Query Frame = 1
Query:    1 IRGEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALL--PGEALPP-IYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWDLEADG---PAEGRPARLRLDETLEVACVRTVHSELCHGLLV 441
            + G+PSS+ ++  DG+P LL D G GV +     L     + P  ++++HNH DH+GELP+L+A E  +R+  +       P  R+LC  +++ +L   RL EL S++   +  A+      +G P  L   +   +   RT+HSE+C+G L+
Sbjct:  829 VHGQPSSSVIIYHDGKPLLLADIGAGVLKPCMEKLGHSHSSFPRNVFISHNHMDHSGELPLLLAFESMRRYKAK------EPALRVLCGPEVEHKLKAHRLDELLSTSYTPEQVAEWIVCKPDGDPTYLDDAKQFFIKIYRTLHSEVCYGFLL 975          
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: UPI000F5554CD (uncharacterized protein LOC113678871 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5554CD)

HSP 1 Score: 79.3 bits (194), Expect = 2.010e-14
Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = 1
Query:    1 IRGEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALLPGEALPP-IYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWDLE--ADGPA---EGRPARLRLDETLEVACVRTVHSELCHGLLVW 444
            + G+PSS+A++  +G+P LL D G GV +A R  L     P  +++T+NH DHAGELP+L   E  +RH   L G    PR R+L   ++Q +L   RL E+      + LE  AD      EG P  L  ++   +   +T+HS +C+G +++
Sbjct:  316 LHGQPSSSAIVFHEGKPLLLADVGAGVLKACRERLAHNEFPRNVFITNNHLDHAGELPLLFLFESERRH---LAG---EPRLRVLSGPEVQHKLKTCRLDEMLHL---YTLEQIADWVVCQQEGDPTYLDDEKQFSMKIHKTLHSGICYGFVLF 460          
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Match: D8U8Q5_VOLCA (Lactamase_B domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U8Q5_VOLCA)

HSP 1 Score: 78.2 bits (191), Expect = 2.480e-14
Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = 1
Query:   10 EPSSAAVLLVDGRPRLLLDAGCGVTRAFRALLPGEALPPIYVTHNHSDHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHELRSSNQRWDLEA---DGPAEGRPARLRLDETLEVACVRTVHSELCHGLLVW 444
            +PSS+ V++  G P LL D G GVT A   L+ G   P +YV+HNH DH GELPV++A+E       R         P +  HA +   +   RL EL+S+ +  +  A   D PA G       D  L +   R+ HSE C+GL+++
Sbjct:   43 QPSSSFVVVKKGEPILLCDVGYGVTAACLKLV-GRVPPNLYVSHNHGDHTGELPVVLAVE-----STRAATAGCQQPPHLYAHADVLAEVRQHRLRELKSTGKPLEDFAVFHDVPA-GEGTTAIADSGLAIRPFRSRHSETCYGLVLY 183          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123541.4813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0J4Y6_9GAMM8.090e-2140.14Lactamase_B domain-containing protein n=2 Tax=Gamm... [more]
A0A423PFN6_9GAMM3.980e-1942.38Lactamase_B domain-containing protein n=2 Tax=Sali... [more]
UPI000C03EB341.290e-1736.84uncharacterized protein LOC111339252 isoform X1 n=... [more]
A0A2B4RPB5_STYPI1.340e-1736.84Serine/threonine-protein kinase Nek6 n=1 Tax=Stylo... [more]
UPI000F5590C21.160e-1636.18uncharacterized protein LOC113678861 n=1 Tax=Pocil... [more]
A0A3M6UKT8_POCDA1.210e-1636.18Protein kinase domain-containing protein n=1 Tax=P... [more]
UPI001CF56F0B2.210e-1634.64uncharacterized protein LOC114963820 isoform X1 n=... [more]
UPI000779FF066.520e-1532.68tyrosine-protein kinase Fer-like isoform X3 n=2 Ta... [more]
UPI000F5554CD2.010e-1435.71uncharacterized protein LOC113678871 n=1 Tax=Pocil... [more]
D8U8Q5_VOLCA2.480e-1436.49Lactamase_B domain-containing protein n=1 Tax=Volv... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123541contigM-pyrifera_M_contig123541:1..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue4.3e-13
Seed eggNOG ortholog3067.XP_002955036.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E99S@1,2SFNS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.7676609-CDS-M-pyrifera_M_contig123541:0..3391622815753.7676609-CDS-M-pyrifera_M_contig123541:0..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123541 1..339 +
1692277553.4607494-CDS-M-pyrifera_M_contig123541:0..3391692277553.4607494-CDS-M-pyrifera_M_contig123541:0..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123541 1..339 +
1622815753.7792726-CDS-M-pyrifera_M_contig123541:411..5191622815753.7792726-CDS-M-pyrifera_M_contig123541:411..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123541 412..519 +
1692277553.4718704-CDS-M-pyrifera_M_contig123541:411..5191692277553.4718704-CDS-M-pyrifera_M_contig123541:411..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123541 412..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123541.4813.1prot_M-pyrifera_M_contig123541.4813.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123541 1..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123541.4813.1

>prot_M-pyrifera_M_contig123541.4813.1 ID=prot_M-pyrifera_M_contig123541.4813.1|Name=mRNA_M-pyrifera_M_contig123541.4813.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
IRGEPSSAAVLLVDGRPRLLLDAGCGVTRAFRALLPGEALPPIYVTHNHS
DHAGELPVLVAMELAKRHGQRLEGRPLSPRPRILCHAQLQPRLLHRRLHE
LRSSNQRWDLEADGPAEGRPARLRLDETLEVACVRTVHSELCHGLLVWA
back to top

mRNA from alignment at M-pyrifera_M_contig123541:1..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123541.4813.1 ID=mRNA_M-pyrifera_M_contig123541.4813.1|Name=mRNA_M-pyrifera_M_contig123541.4813.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig123541:1..519+ (Macrocystis pyrifera P11B4 male)
ATCCGCGGCGAGCCGAGCAGCGCGGCGGTGCTGCTGGTGGACGGGCGGCC GCGGCTGCTGCTGGACGCGGGCTGTGGCGTGACGCGGGCCTTCCGCGCGC TGCTGCCCGGCGAGGCGCTGCCGCCGATCTACGTGACGCACAACCACTCG GACCACGCCGGAGAGCTGCCGGTGCTCGTGGCCATGGAGCTGGCCAAGCG CCACGGCCAGCGCCTGGAGGGGCGGCCGCTGTCGCCGCGGCCGCGCATCC TCTGCCACGCACAGCTGCAGCCGCGGCTGCTGCACCGCCGCCTGCACGAG CTGCGCTCCTCCAACCAGCGCTGGGACCTCGAGGCAGACGTCGACTGGTG CCTCGTGCCCGAGCACCCCTGGGCCCCCCCCCCGCAGCGGGCGCGCGAGG GCGGGGGCGAGGGGCCGGCGGAGGGGCGGCCGGCGCGGCTGCGGCTGGAC GAGACGCTGGAGGTGGCCTGCGTGCGCACGGTGCACAGCGAGCTGTGCCA CGGCCTGCTGGTGTGGGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123541:1..519+

>mRNA_M-pyrifera_M_contig123541.4813.1 ID=mRNA_M-pyrifera_M_contig123541.4813.1|Name=mRNA_M-pyrifera_M_contig123541.4813.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig123541:1..519+ (Macrocystis pyrifera P11B4 male)
ATCCGCGGCGAGCCGAGCAGCGCGGCGGTGCTGCTGGTGGACGGGCGGCC
GCGGCTGCTGCTGGACGCGGGCTGTGGCGTGACGCGGGCCTTCCGCGCGC
TGCTGCCCGGCGAGGCGCTGCCGCCGATCTACGTGACGCACAACCACTCG
GACCACGCCGGAGAGCTGCCGGTGCTCGTGGCCATGGAGCTGGCCAAGCG
CCACGGCCAGCGCCTGGAGGGGCGGCCGCTGTCGCCGCGGCCGCGCATCC
TCTGCCACGCACAGCTGCAGCCGCGGCTGCTGCACCGCCGCCTGCACGAG
CTGCGCTCCTCCAACCAGCGCTGGGACCTCGAGGCAGACATCCGCGGCGA
GCCGAGCAGCGCGGCGGTGCTGCTGGTGGACGGGCGGCCGCGGCTGCTGC
TGGACGCGGGCTGTGGCGTGACGCGGGCCTTCCGCGCGCTGCTGCCCGGC
GAGGCGCTGCCGCCGATCTACGTGACGCACAACCACTCGGACCACGCCGG
AGAGCTGCCGGTGCTCGTGGCCATGGAGCTGGCCAAGCGCCACGGCCAGC
GCCTGGAGGGGCGGCCGCTGTCGCCGCGGCCGCGCATCCTCTGCCACGCA
CAGCTGCAGCCGCGGCTGCTGCACCGCCGCCTGCACGAGCTGCGCTCCTC
CAACCAGCGCTGGGACCTCGAGGCAGACGGGCCGGCGGAGGGGCGGCCGG
CGCGGCTGCGGCTGGACGAGACGCTGGAGGTGGCCTGCGTGCGCACGGTG
CACAGCGAGCTGTGCCACGGCCTGCTGGTGTGGGCGGGGCCGGCGGAGGG
GCGGCCGGCGCGGCTGCGGCTGGACGAGACGCTGGAGGTGGCCTGCGTGC
GCACGGTGCACAGCGAGCTGTGCCACGGCCTGCTGGTGTGGGCG
back to top