mRNA_M-pyrifera_M_contig123540.4812.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A7Y1UZ06_9ACTN (Copper resistance protein CopC/CopD (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1UZ06_9ACTN) HSP 1 Score: 160 bits (404), Expect = 4.940e-44 Identity = 88/194 (45.36%), Postives = 121/194 (62.37%), Query Frame = 1
Query: 1 VFAVTTMRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVDPVVALR--------------WSS---LQDAGPG---DPMVRDGDQAWRYGPESSLAVVGAMALLGAHLFDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
VFA +RG D+R V++WVRR+G+L ++GA++E+ AQ+V+ G S + SA+G VV SS GIA GLR GGV LA G+RL TI A + DPVVA+R W S + A P +P + GD+AW G +S++ GA+A+L + LFDGHTV+KG+R T ++D+VHVAG A W GG
Sbjct: 189 VFAAAVLRGAPSDIRFVLYWVRRSGVLLLIGALIELFAQVVVAGGGPVSALWNFSALGSVVFSSLGIAIGLRAVGGVALATGSRLTTICATQVADPVVAVRELVGVGAGSSASAGWPSNFVAEGAAPNQNTEPYIHAGDRAWTAGTDSAVGFAGALAVLASFLFDGHTVSKGHRLFTSLVDVVHVAGAAVWVGG 382
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A7Y2ICV2_9ACTN (Copper resistance protein CopC/CopD n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2ICV2_9ACTN) HSP 1 Score: 155 bits (393), Expect = 6.060e-42 Identity = 87/194 (44.85%), Postives = 117/194 (60.31%), Query Frame = 1
Query: 1 VFAVTTMRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVDPVVALRWSSLQDAGP--------------------GDPMVRDGDQAWRYGPESSLAVVGAMALLGAHLFDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
VFA +RG + D+R V++WVRR G L ++GA+VE+VAQ+ + G S S +A+ VV SS GIA GLR GG LA GARL T A + DP+VA++ + AGP G+P + GD+AW +S+ A +GA +L + +FDGHTV+KGNR +TG +DIVHVAG A WAGG
Sbjct: 182 VFAAAVLRGARADIRFVLYWVRRGGALLLIGAVVELVAQVAVAGGGTASALWSYTALTDVVLSSLGIAIGLRAVGGFALATGARLSTTRATEAADPIVAIKELAGVGAGPTTTTGSPFDFFAPEPEVVEVGEPYLFTGDRAWSIDTDSARAFLGAAVVLASFIFDGHTVSKGNRMVTGFVDIVHVAGAAVWAGG 375
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A7Y2IFT6_9ACTN (Copper resistance protein CopC/CopD n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IFT6_9ACTN) HSP 1 Score: 123 bits (309), Expect = 7.850e-30 Identity = 74/187 (39.57%), Postives = 106/187 (56.68%), Query Frame = 1
Query: 1 VFAVTTMRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVDPVVALRWSSLQDAGP-------------GDPMVRDGDQAWRYGPESSLAVVGAMALLGAHLFDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
VFA +RG R+VR V++WVRRAG L ++G++ +AQ +G WS SP+A + SS G+A LR+ GG ++ GA+ DT AA DPVVA++ +GP G+ V DGD AW + S A+VG ++ + LFDGHTV++G R+L +++HV A WAGG
Sbjct: 211 VFAALVLRGNTREVRAVLYWVRRAGALLILGSVGAAMAQAATLQSG-WSGLWSPAAWANTMWSSLGLAIALRLVGGALVMTGAKFDTRAATTAGDPVVAVKQLVSVGSGPRISGPSHSMEPPGGELYVHDGDHAW-HPSASPAALVGIALIVTSFLFDGHTVSEGPRWLHAATNLIHVVTAATWAGG 395
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A7Y2ICX0_9ACTN (Copper resistance protein CopC n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2ICX0_9ACTN) HSP 1 Score: 120 bits (302), Expect = 8.550e-29 Identity = 71/193 (36.79%), Postives = 102/193 (52.85%), Query Frame = 1
Query: 1 VFAVTTMRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVDPVVALR-------------------WSSLQDAGPGDPMVRDGDQAWRYGPESSLAVVGAMALLGAHLFDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
VF +R + D+R+V+FWVR AGLL +VG V+ Q+V+E+ G WS SPS++ V+ S+FG A LR+ PV+A+R WS D +P++ GD W ++ ++G+ L+ A+LFDGHTVT+GNRFLTG++D+VHV G WAGG
Sbjct: 225 VFVGMVLRSSKGDIRYVLFWVRWAGLLVIVGTTAGVLGQLVVENDGNWSGAVSPSSLWSVLWSAFGAAVVLRLAXXXXXXXXXXXXXXXXXXXXXPVIAIRELASVGSGTRTGSPDTSNFWSESPDPIATEPLLHRGDHMWL---PTTAGLIGSALLVVAYLFDGHTVTEGNRFLTGLVDLVHVGGAGVWAGG 414
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A7Y1UU41_9ACTN (Copper resistance protein CopC/CopD n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1UU41_9ACTN) HSP 1 Score: 120 bits (300), Expect = 1.210e-28 Identity = 72/188 (38.30%), Postives = 103/188 (54.79%), Query Frame = 1
Query: 4 FAVTTMRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVDPVVALRWSSLQDAGP---------------GDPMVRDGDQAWRYGPESSLAVVGAMALLGAHLFDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
FAV +RG +RDVR V+FWVRRA ++ GA++E + +I E G W S I + + FG+A LR G ++ + A LD + A DPVV L+ + AGP G P +R GD+AWR + + +G +A+L + FDGHTVT+G R +T ++ +VHV GA W GG
Sbjct: 189 FAVVVLRGHERDVRSVLFWVRRASVVLGAGAVLEALHRIA-EINGTWWTVWPLSGIADALWAPFGVAVALRFLGAALM-MRAHLDVVHATMAPDPVVVLQTAVAVGAGPRPSQAAAIGSPEAEAGAPYLRSGDRAWRVDGQLAPVALGVVAVLLSFAFDGHTVTEGTRLVTAIVAVVHVGAGAVWGGG 374
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A349B617_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B617_9ACTN) HSP 1 Score: 114 bits (284), Expect = 2.080e-26 Identity = 68/180 (37.78%), Postives = 102/180 (56.67%), Query Frame = 1
Query: 1 VFAVTTMRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVDPV------VALRWSSLQDAGPGDPMVRDGDQAWRYGPESSLAVVGAMALLGAHLFDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
VF +T MRG +R++R ++FWVRRAG++ VVG + + Q+V AG + P A V+G S G++ G R+ GG ++A ARL + A D V V + +++ A D ++ D AW + A+VG + +L +H+ DGHTVT+G+R+LTG VHV A W GG
Sbjct: 192 VFCLTVMRGTRRELRLLLFWVRRAGVVIVVGTAGDAIGQVV-HQAGGFGAVVDPGAYWSVLGGSLGVSLGARLVGGAIIATRARLVMVHARHARDVVRSISARVPIGAGAVRVADRPDGGAQERDLAWELDRRGAFALVGFVLVLVSHVMDGHTVTEGSRWLTGTASSVHVLAAAVWVGG 370
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A7Y2NBU9_9ACTN (Copper resistance protein CopC/CopD n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2NBU9_9ACTN) HSP 1 Score: 110 bits (275), Expect = 4.090e-25 Identity = 72/187 (38.50%), Postives = 106/187 (56.68%), Query Frame = 1
Query: 1 VFAVTTMRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVDPVVALRWSSLQDAGPGD--------PMVRDG-----DQAWRYGPESSLAVVGAMALLGAHLFDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
+FA MRG + ++ V+ +R A L VVGA E++ Q+ + G W+ S +G V+ S+FG+A L+I GG +++ A L + A + +DPVV LR AGP + P V G + WR +S G +A+L A LFDGHTV++G+R +TG++D+VHVA GA WAGG
Sbjct: 201 IFAALVMRGTEGELAMVVTLIRIAAYLIVVGAAAELITQLAAVN-GDWATLTPISTVGEVLVSAFGVAVALKILGGTLMS-KAALTIVTASETLDPVVQLRQLVPVGAGPDEAALPLDAAPPVDGGLPNRHNFVWRSHSDSLGVPAGMVAVLAAFLFDGHTVSEGDRIVTGIVDVVHVAAGAIWAGG 385
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A7Y2IN95_9ACTN (Copper resistance protein CopC/CopD n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2IN95_9ACTN) HSP 1 Score: 104 bits (260), Expect = 4.830e-23 Identity = 71/193 (36.79%), Postives = 100/193 (51.81%), Query Frame = 1
Query: 4 FAVTTMRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVD-----------PVVALRWSSLQDAGPGD---------PMVRDGDQAWRYGPESSLAVVGAMALLGAHLFDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
FAV +RG + ++ HV+FW RR G+L V+ AI+E VAQ+ ES A + + S V S+FG+A +RI GG+ LA+GA A D ++A + Q D P V G+ WR +S+LA LL ++ FDGHTVT+G+R++TG L+ HV G A W GG
Sbjct: 200 FAVVVLRGTKGEIWHVLFWTRRGGVLVVLSAILEFVAQVSSESGQASTLSSTFS----VATSTFGLAIAMRIVGGIALAIGADFSLWTAPASPDLLPHRQQGAQRQLIAASSGAAQPPAEVDFFPNSLEKEPSVGRGELMWRATADSTLAFASVPILLISYAFDGHTVTEGDRWVTGALNAFHVGGAAVWVGG 388
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A7Y2NCU2_9ACTN (Copper resistance protein CopC/CopD n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2NCU2_9ACTN) HSP 1 Score: 95.1 bits (235), Expect = 1.040e-19 Identity = 67/174 (38.51%), Postives = 89/174 (51.15%), Query Frame = 1
Query: 4 FAVTTMRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVDPVVALRWSSLQDAGPGDPMVRDGDQAW-RYGPESSLAVVGAMALLGAHLFDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
FA +RG V VM+WVRR LL +GA VE VAQI ++GGVV S+FG+A GLR+ GG++L + A L L ++ A P + D P+ + ++ L+GA LFDGHTVT+G+R LTG+ D VHV GA W GG
Sbjct: 171 FAGLVVRGYPSLVARVMYWVRRTALLIPLGAAVEFVAQI-----------GQVGSVGGVVFSTFGVALGLRVAGGMLLLMQAPLSGPPVPTAAPTGERLLVAAGHVALPRPAETCETDLVVPSTSPDGTASLAAVAMLVGAFLFDGHTVTEGSRVLTGLFDAVHVLAGAVWVGG 333
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Match: A0A357ZYX0_9ACTN (Uncharacterized protein n=4 Tax=root TaxID=1 RepID=A0A357ZYX0_9ACTN) HSP 1 Score: 63.5 bits (153), Expect = 1.270e-8 Identity = 54/178 (30.34%), Postives = 86/178 (48.31%), Query Frame = 1
Query: 22 RGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSXXXSPSAIGGVVGSSFGIATGLRIFGGVMLAVGARLDTIAAVDIVDPVVA-LRWSSLQDAGPGDPMVRDGDQAWRYGPESSLAVV----GAMALLGAHL------FDGHTVTKGNRFLTGMLDIVHVAGGADWAGG 522
RG + + R ++F++RRA +L V+G++VE AQ+ + + P+ G V + F + T R+ G V++ +D + + + V L W + D P ++ D R P ++L V G +ALLGA L F GHT + R L G+ D VH+ A WA G
Sbjct: 217 RGTRSESRRIVFFIRRAAVLIVLGSVVEWFAQLALWNGDGIGDLVRPAVWGEVGSTGFALGTLCRVVGAVLVLRFVAIDVVPEDEREEASVTDLEWITEPD--PSGSVMLD-----RQPPSTTLTRVRVESGPLALLGAALLILSESFIGHTASIEPRALMGVSDAVHLTSAAIWAAG 387 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123540.4812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig123540.4812.1 >prot_M-pyrifera_M_contig123540.4812.1 ID=prot_M-pyrifera_M_contig123540.4812.1|Name=mRNA_M-pyrifera_M_contig123540.4812.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp MRGRQRDVRHVMFWVRRAGLLAVVGAIVEVVAQIVIESAGAWSGIWSPSAback to top mRNA from alignment at M-pyrifera_M_contig123540:1..522+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig123540.4812.1 ID=mRNA_M-pyrifera_M_contig123540.4812.1|Name=mRNA_M-pyrifera_M_contig123540.4812.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig123540:1..522+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig123540:1..522+ >mRNA_M-pyrifera_M_contig123540.4812.1 ID=mRNA_M-pyrifera_M_contig123540.4812.1|Name=mRNA_M-pyrifera_M_contig123540.4812.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig123540:1..522+ (Macrocystis pyrifera P11B4 male)back to top |