mRNA_M-pyrifera_M_contig123538.4811.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123538.4811.1
Unique NamemRNA_M-pyrifera_M_contig123538.4811.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: A0A1Y1ZCJ4_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZCJ4_9FUNG)

HSP 1 Score: 132 bits (332), Expect = 1.300e-33
Identity = 75/159 (47.17%), Postives = 98/159 (61.64%), Query Frame = 1
Query:    1 DSWSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKV-AARPRRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRRGRWTAEEDMRLRLAVRVYGT-TWYKVAEHVRGRTDVQCRERFV 471
            + WS QE   L+   +EM  RNW  IA +L T R+ ++C ++Y  K+ +A  R RWT EED+ LR ++   YG+            W +V   L  RT QQCL RW K+L+PA+RRGRWT EED  LR AV VYG   W K+ +HV GRTDVQCRER++
Sbjct:  144 EEWSKQESHRLVEIVKEMGGRNWPEIAVRLGTNRTAVSCFKQYQSKLNSAMIRNRWTEEEDNILREAV-HVYGERN----------WQQVAHCLDNRTGQQCLHRWSKTLNPAIRRGRWTNEEDEALRSAVEVYGPGNWVKIQQHVLGRTDVQCRERYM 291          
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: A0A7S4HSF7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HSF7_9EUKA)

HSP 1 Score: 125 bits (314), Expect = 1.720e-30
Identity = 71/157 (45.22%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    7 WSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKV-AARPRRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRRGRWTAEEDMRLRLAVRVYGT-TWYKVAEHVRGRTDVQCRERFV 471
            W+  ED  LL  A++     W  IA  L T R+   C  RY   +  A  + +WTP+ED++L+ +I + YGD            W +V   L GRT QQCL RW K+L P ++RGRWT EED  L LAV+ YG+ +W KV +HV GRTDVQCRER+V
Sbjct:  274 WTKAEDKRLLDLAKQYKNHEWEQIAKALGTNRTAFQCFSRYQRSLNTAIVKGKWTPQEDERLKDAIQQ-YGDKN----------WQQVAHYLNGRTGQQCLHRWQKTLKPNIKRGRWTPEEDKALTLAVKAYGSKSWVKVQQHVPGRTDVQCRERWV 419          
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: A0A6N2L7R4_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2L7R4_SALVM)

HSP 1 Score: 122 bits (306), Expect = 2.100e-30
Identity = 71/158 (44.94%), Postives = 93/158 (58.86%), Query Frame = 1
Query:    7 WSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKVAARP-RRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRR-GRWTAEEDMRLRLAVRVYGTT-WYKVAEHVRGRTDVQCRERFV 471
            W+ +ED  LL   +E    NWF IA  L T R+P  CL R+   + AR  +R WT EED QLRA++  +   D           W  V + L GR   QC  RW K+L PA+RR GRWT +ED RL++AV+++G   W K+A+ V GRT VQCRER+V
Sbjct:  164 WTIKEDKNLLLIVQEKGVTNWFDIAVSLGTNRTPFQCLSRFQRSLNARILKREWTKEEDAQLRAAVETYGERD-----------WQFVASTLEGRAGTQCSNRWKKTLHPAIRRVGRWTLDEDKRLKVAVKLFGPKKWDKIAQFVPGRTQVQCRERWV 310          
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: A0A5N5K4B9_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5K4B9_9ROSI)

HSP 1 Score: 125 bits (314), Expect = 2.210e-30
Identity = 72/158 (45.57%), Postives = 93/158 (58.86%), Query Frame = 1
Query:    7 WSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKVAARP-RRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRR-GRWTAEEDMRLRLAVRVYGTT-WYKVAEHVRGRTDVQCRERFV 471
            W+  ED  LL   +E    NWF IA  L T R+P  CL R+   + AR  +R WT EED QLRA++  +   D           W  V + L GR   QC  RW K+L PA+RR GRWT +ED RL++AV+++G   W K+A+ VRGRT VQCRER+V
Sbjct:  446 WTINEDKNLLLIVQEKGVTNWFDIAVSLGTNRTPFQCLSRFQRSLNARILKREWTKEEDAQLRAAVETYGERD-----------WQSVASTLEGRAGTQCSNRWKKTLHPAIRRVGRWTLDEDKRLKVAVKLFGPKKWDKIAQFVRGRTQVQCRERWV 592          
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: UPI00192EE863 (myb-like protein L isoform X3 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EE863)

HSP 1 Score: 125 bits (313), Expect = 2.320e-30
Identity = 72/158 (45.57%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    7 WSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKV-AARPRRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRR-GRWTAEEDMRLRLAVRVYGT-TWYKVAEHVRGRTDVQCRERFV 471
            W+ +ED  LL + +E    NWF +A  L T R+P  CL RY   +     +  WTP+ED QLRA++      +   EGD     W  V + L GRT  QC  RW K+L PA +R GRWTA+ED RLR+AV+++G   W K+A+ V GRT VQCRER+V
Sbjct:  432 WTVEEDKRLLFSIQEKGINNWFEVAVSLGTKRTPFQCLARYQRSLNPCILKSEWTPDEDAQLRAAV------EILGEGD-----WQAVASALEGRTGTQCSNRWKKTLHPARQRVGRWTADEDKRLRVAVKLFGPKNWMKIADFVPGRTQVQCRERWV 578          
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: UPI00192EC6FE (uncharacterized protein LOC104422048 isoform X1 n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EC6FE)

HSP 1 Score: 125 bits (313), Expect = 2.920e-30
Identity = 72/158 (45.57%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    7 WSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKV-AARPRRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRR-GRWTAEEDMRLRLAVRVYGT-TWYKVAEHVRGRTDVQCRERFV 471
            W+ +ED  LL + +E    NWF +A  L T R+P  CL RY   +     +  WTP+ED QLRA++      +   EGD     W  V + L GRT  QC  RW K+L PA +R GRWTA+ED RLR+AV+++G   W K+A+ V GRT VQCRER+V
Sbjct:  432 WTVEEDKRLLFSIQEKGINNWFEVAVSLGTKRTPFQCLARYQRSLNPCILKSEWTPDEDAQLRAAV------EILGEGD-----WQAVASALEGRTGTQCSNRWKKTLHPARQRVGRWTADEDKRLRVAVKLFGPKNWMKIADFVPGRTQVQCRERWV 578          
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: A0A059CZT7_EUCGR (Uncharacterized protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CZT7_EUCGR)

HSP 1 Score: 125 bits (313), Expect = 2.990e-30
Identity = 72/158 (45.57%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    7 WSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKV-AARPRRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRR-GRWTAEEDMRLRLAVRVYGT-TWYKVAEHVRGRTDVQCRERFV 471
            W+ +ED  LL + +E    NWF +A  L T R+P  CL RY   +     +  WTP+ED QLRA++      +   EGD     W  V + L GRT  QC  RW K+L PA +R GRWTA+ED RLR+AV+++G   W K+A+ V GRT VQCRER+V
Sbjct:  432 WTVEEDKRLLFSIQEKGINNWFEVAVSLGTKRTPFQCLARYQRSLNPCILKSEWTPDEDAQLRAAV------EILGEGD-----WQAVASALEGRTGTQCSNRWKKTLHPARQRVGRWTADEDKRLRVAVKLFGPKNWMKIADFVPGRTQVQCRERWV 578          
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: A0A1Q3BL02_CEPFO (Myb_DNA-binding domain-containing protein/Myb_DNA-bind_6 domain-containing protein n=2 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BL02_CEPFO)

HSP 1 Score: 124 bits (312), Expect = 3.770e-30
Identity = 71/158 (44.94%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    7 WSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKV-AARPRRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRR-GRWTAEEDMRLRLAVRVYGT-TWYKVAEHVRGRTDVQCRERFV 471
            W+ +ED  LL   +E    NWF IA  L T R+P  CL+RY   + A+  +R WT EED++LR ++  F             G W  V + L GRT  QC  RW+KSL PA +R GRWT +ED RL++AV ++G  +W K+A+ V GRT VQCRER+V
Sbjct:  448 WTVEEDKNLLFIVQEKGITNWFDIAVLLGTNRTPFQCLKRYQRSLNASILKREWTSEEDEKLRIAVEAF-----------GEGNWQPVASALKGRTGTQCSNRWNKSLHPARQRVGRWTLDEDKRLKVAVMLFGPKSWRKIAQFVPGRTQVQCRERWV 594          
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: A0A1U7YTW8_NELNU (uncharacterized protein LOC104587774 isoform X1 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7YTW8_NELNU)

HSP 1 Score: 124 bits (312), Expect = 4.140e-30
Identity = 71/158 (44.94%), Postives = 93/158 (58.86%), Query Frame = 1
Query:    7 WSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKVAARPRRR-WTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRR-GRWTAEEDMRLRLAVRVYGT-TWYKVAEHVRGRTDVQCRERFV 471
            WS  ED  LL   ++    NW  IA +L T R+P  CL RY   + A   +R WT ++D QLRA++  F  DD           W  + + L GRT  QC  RW K+L PA +R GRWTA+ED RL++AV ++G  TW K+A+ V GRT VQCRER+V
Sbjct:  427 WSNNEDKKLLFIVQQSGLYNWIDIARELGTGRTPFQCLARYQRSLNAHIMKRDWTEDDDAQLRAAVETFGEDD-----------WQLIASNLEGRTGTQCSNRWRKTLHPARQRVGRWTADEDKRLKVAVMLFGPKTWMKIAQFVPGRTQVQCRERWV 573          
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Match: A0A2G9HYB1_9LAMI (Uncharacterized protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HYB1_9LAMI)

HSP 1 Score: 124 bits (311), Expect = 5.520e-30
Identity = 73/158 (46.20%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    7 WSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKV-AARPRRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQCLCRWHKSLSPALRR-GRWTAEEDMRLRLAVRVYGT-TWYKVAEHVRGRTDVQCRERFV 471
            W+  ED  LL   ++    NW  IAA L T R+P  CL RY   + A+  +R WT EED+QLRA++   YG+            W  V + + GRT  QC  RW K+L+PA +R G+WTAEED RL++AV ++G  TW KVA++V GRT VQCRER+V
Sbjct:  436 WTAMEDKNLLHIVQQRGLSNWIDIAASLGTNRTPFQCLARYQRSLNASILKREWTKEEDNQLRAAV-ETYGESN----------WQLVASVVEGRTGTQCSNRWLKTLNPARKRVGKWTAEEDKRLKVAVTLFGPKTWKKVAKYVSGRTQVQCRERWV 582          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123538.4811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1ZCJ4_9FUNG1.300e-3347.17Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A7S4HSF7_9EUKA1.720e-3045.22Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6N2L7R4_SALVM2.100e-3044.94Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
A0A5N5K4B9_9ROSI2.210e-3045.57Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
UPI00192EE8632.320e-3045.57myb-like protein L isoform X3 n=1 Tax=Eucalyptus g... [more]
UPI00192EC6FE2.920e-3045.57uncharacterized protein LOC104422048 isoform X1 n=... [more]
A0A059CZT7_EUCGR2.990e-3045.57Uncharacterized protein n=1 Tax=Eucalyptus grandis... [more]
A0A1Q3BL02_CEPFO3.770e-3044.94Myb_DNA-binding domain-containing protein/Myb_DNA-... [more]
A0A1U7YTW8_NELNU4.140e-3044.94uncharacterized protein LOC104587774 isoform X1 n=... [more]
A0A2G9HYB1_9LAMI5.520e-3046.20Uncharacterized protein n=1 Tax=Handroanthus impet... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123538contigM-pyrifera_M_contig123538:51..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score125.2
Seed ortholog evalue2.7e-26
Seed eggNOG ortholog192875.XP_004364221.1
KEGG koko:K09420,ko:K21769
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGs3AT7M@33154,COG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.6736836-CDS-M-pyrifera_M_contig123538:50..5211622815753.6736836-CDS-M-pyrifera_M_contig123538:50..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123538 51..521 +
1692277553.4257617-CDS-M-pyrifera_M_contig123538:50..5211692277553.4257617-CDS-M-pyrifera_M_contig123538:50..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123538 51..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123538.4811.1prot_M-pyrifera_M_contig123538.4811.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123538 51..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123538.4811.1

>prot_M-pyrifera_M_contig123538.4811.1 ID=prot_M-pyrifera_M_contig123538.4811.1|Name=mRNA_M-pyrifera_M_contig123538.4811.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
DSWSPQEDAALLAAAEEMDKRNWFAIAAQLPTVRSPLACLRRYVHKVAAR
PRRRWTPEEDDQLRASIARFYGDDAPTEGDFAHGVWSRVCAELPGRTAQQ
CLCRWHKSLSPALRRGRWTAEEDMRLRLAVRVYGTTWYKVAEHVRGRTDV
QCRERFV
back to top

mRNA from alignment at M-pyrifera_M_contig123538:51..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123538.4811.1 ID=mRNA_M-pyrifera_M_contig123538.4811.1|Name=mRNA_M-pyrifera_M_contig123538.4811.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig123538:51..521+ (Macrocystis pyrifera P11B4 male)
GACTCGTGGAGCCCGCAGGAGGACGCGGCGTTGCTGGCAGCCGCGGAGGA GATGGACAAGCGCAACTGGTTCGCCATCGCCGCGCAGCTGCCGACCGTGC GGTCGCCGCTGGCGTGCCTCCGCCGCTACGTGCACAAGGTAGCCGCTCGG CCGCGCCGACGTTGGACGCCGGAGGAGGACGACCAGCTGCGCGCCTCCAT CGCCCGTTTCTACGGCGACGACGCGCCGACCGAGGGCGACTTTGCGCACG GCGTGTGGTCGCGCGTGTGCGCGGAGCTGCCCGGCCGCACCGCGCAGCAG TGCCTGTGCCGGTGGCACAAGTCGCTGTCGCCGGCGCTGCGCCGCGGGCG GTGGACGGCGGAGGAGGACATGCGGCTGCGGCTGGCGGTGCGTGTGTACG GGACGACGTGGTACAAGGTGGCAGAGCATGTGCGCGGCCGCACGGACGTG CAGTGCCGGGAGCGGTTCGTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123538:51..521+

>mRNA_M-pyrifera_M_contig123538.4811.1 ID=mRNA_M-pyrifera_M_contig123538.4811.1|Name=mRNA_M-pyrifera_M_contig123538.4811.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig123538:51..521+ (Macrocystis pyrifera P11B4 male)
GACTCGTGGAGCCCGCAGGAGGACGCGGCGTTGCTGGCAGCCGCGGAGGA
GATGGACAAGCGCAACTGGTTCGCCATCGCCGCGCAGCTGCCGACCGTGC
GGTCGCCGCTGGCGTGCCTCCGCCGCTACGTGCACAAGGTAGCCGCTCGG
CCGCGCCGACGTTGGACGCCGGAGGAGGACGACCAGCTGCGCGCCTCCAT
CGCCCGTTTCTACGGCGACGACGCGCCGACCGAGGGCGACTTTGCGCACG
GCGTGTGGTCGCGCGTGTGCGCGGAGCTGCCCGGCCGCACCGCGCAGCAG
TGCCTGTGCCGGTGGCACAAGTCGCTGTCGCCGGCGCTGCGCCGCGGGCG
GTGGACGGCGGAGGAGGACATGCGGCTGCGGCTGGCGGTGCGTGTGTACG
GGACGACGTGGTACAAGGTGGCAGAGCATGTGCGCGGCCGCACGGACGTG
CAGTGCCGGGAGCGGTTCGTAGACTCGTGGAGCCCGCAGGAGGACGCGGC
GTTGCTGGCAGCCGCGGAGGAGATGGACAAGCGCAACTGGTTCGCCATCG
CCGCGCAGCTGCCGACCGTGCGGTCGCCGCTGGCGTGCCTCCGCCGCTAC
GTGCACAAGGTAGCCGCTCGGCCGCGCCGACGTTGGACGCCGGAGGAGGA
CGACCAGCTGCGCGCCTCCATCGCCCGTTTCTACGGCGACGACGCGCCGA
CCGAGGGCGACTTTGCGCACGGCGTGTGGTCGCGCGTGTGCGCGGAGCTG
CCCGGCCGCACCGCGCAGCAGTGCCTGTGCCGGTGGCACAAGTCGCTGTC
GCCGGCGCTGCGCCGCGGGCGGTGGACGGCGGAGGAGGACATGCGGCTGC
GGCTGGCGGTGCGTGTGTACGGGACGACGTGGTACAAGGTGGCAGAGCAT
GTGCGCGGCCGCACGGACGTGCAGTGCCGGGAGCGGTTCGTA
back to top